Clone Information

BLAST Search Result

Clone Name	rbags4k18
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_475639.1\| Oryza sativa (japonica cultivar-group), predic...	204	2e-49
2	dbj\|AK099832.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	204	2e-49
3	gb\|AC124144.2\| Oryza sativa (japonica cultivar-group) chromosome...	200	4e-48
4	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	200	4e-48
5	dbj\|AK072427.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	196	6e-47
6	ref\|XM_550189.1\| Oryza sativa (japonica cultivar-group), mRNA	46	0.14
7	gb\|AC140347.3\| Mus musculus BAC clone RP23-233K3 from chromosome...	46	0.14
8	gb\|AC154911.4\| Mus musculus BAC clone RP23-25I3 from chromosome ...	46	0.14
9	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	46	0.14
10	dbj\|AP003225.3\| Oryza sativa (japonica cultivar-group) genomic D...	46	0.14
11	dbj\|AK063770.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	46	0.14
12	gb\|AC161342.10\| Mus musculus chromosome 1, clone RP23-313K17, co...	44	0.54
13	gb\|AC115858.14\| Mus musculus chromosome 7, clone RP24-285C16, co...	44	0.54
14	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	44	0.54
15	gb\|AC084405.6\| Oryza sativa chromosome 3 BAC OSJNBa0044H10 genom...	44	0.54
16	emb\|AL662868.15\| Mouse DNA sequence from clone RP23-144P24 on ch...	44	0.54
17	gb\|AE014181.1\| Mus musculus piebald deletion region section 9 of...	44	0.54
18	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.54
19	gb\|AC137069.2\| Genomic sequence for Oryza sativa, Nipponbare str...	44	0.54
20	dbj\|AK107060.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	44	0.54
21	gb\|AC151896.3\| Mus musculus BAC clone RP24-501F15 from 18, compl...	44	0.54
22	gb\|AC147513.16\| Mus musculus chromosome 1, clone RP23-105K16, co...	44	0.54
23	gb\|AC125270.7\| Mus musculus chromosome 5, clone RP24-150L20, com...	44	0.54
24	gb\|AC116748.8\| Mus musculus chromosome 9, clone RP23-80L8, compl...	42	2.1
25	gb\|AC164088.2\| Mus musculus BAC clone RP23-65F24 from chromosome...	42	2.1
26	gb\|AC174233.4\| Pan troglodytes BAC clone CH251-560K10 from chrom...	42	2.1
27	gb\|AC006327.3\| Homo sapiens BAC clone RP11-59I21 from 2, complet...	42	2.1
28	gb\|AC119978.7\| Mus musculus chromosome 9, clone RP24-487D12, com...	42	2.1
29	emb\|CT010457.7\| Mouse DNA sequence from clone RP23-96M8 on chrom...	42	2.1
30	emb\|AL840635.6\| Mouse DNA sequence from clone RP23-418D21 on chr...	42	2.1
31	ref\|NM_112383.1\| Arabidopsis thaliana unknown protein AT3G15200 ...	40	8.4
32	gb\|AC112962.15\| Mus musculus chromosome 19, clone RP24-74N6, com...	40	8.4
33	gb\|AC159319.2\| Mus musculus BAC clone RP23-37C8 from chromosome ...	40	8.4
34	emb\|CT010488.9\| Mouse DNA sequence from clone RP23-133A3 on chro...	40	8.4
35	gb\|AC125144.3\| Mus musculus BAC clone RP24-346C2 from chromosome...	40	8.4
36	gb\|AC123834.4\| Mus musculus BAC clone RP24-132N9 from chromosome...	40	8.4
37	gb\|AC137693.2\| Oryza sativa (japonica cultivar-group) chromosome...	40	8.4
38	gb\|AC107611.6\| Rattus norvegicus 10 BAC CH230-195I24 (Children's...	40	8.4
39	emb\|AL356093.20\| Human DNA sequence from clone RP11-382K22 on ch...	40	8.4
40	gb\|AC041039.8\| Homo sapiens chromosome 8, clone RP11-273P3, comp...	40	8.4
41	gb\|AC022721.9\| Homo sapiens, clone RP11-191H13, complete sequence	40	8.4
42	gb\|AC091020.10\| Homo sapiens chromosome 18, clone RP11-701C7, co...	40	8.4
43	gb\|AC090466.5\| Homo sapiens chromosome 8, clone RP11-619O19, com...	40	8.4
44	gb\|AC011804.6\| Homo sapiens chromosome 18, clone RP11-71F23, com...	40	8.4
45	gb\|AC157916.2\| Mus musculus chromosome 19, clone RP24-330P23, co...	40	8.4
46	gb\|AC109644.2\| Oryza sativa (japonica cultivar-group) chromosome...	40	8.4
47	gb\|AC144559.1\| Oryza sativa (japonica cultivar-group) chromosome...	40	8.4
48	dbj\|AP008217.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.4
49	gb\|AC098858.3\| Homo sapiens BAC clone RP11-149A7 from 4, complet...	40	8.4
50	gb\|AC102797.5\| Homo sapiens chromosome 18, clone RP11-157P23, co...	40	8.4
51	emb\|BX511205.2\|RN120J22 Rattus norvegicus chromosome 1 BAC RP32-...	40	8.4
52	dbj\|AP001299.1\| Arabidopsis thaliana genomic DNA, chromosome 3, ...	40	8.4
53	emb\|AJ328235.1\|HSA328235 Homo sapiens genomic sequence surroundi...	40	8.4
54	gb\|DP000010.1\| Oryza sativa (japonica cultivar-group) chromosome...	40	8.4
55	gb\|AC137708.16\| Mus musculus chromosome 3, clone RP24-277H8, com...	40	8.4
56	emb\|AL672081.6\| Mouse DNA sequence from clone RP23-319D17 on chr...	40	8.4
57	emb\|AL606746.17\| Mouse DNA sequence from clone RP23-423J10 on ch...	40	8.4
58	emb\|AL929175.6\| Mouse DNA sequence from clone RP23-456N11 on chr...	40	8.4

>ref|XM_475639.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2397

 Score =  204 bits (103), Expect = 2e-49
 Identities = 284/342 (83%), Gaps = 8/342 (2%)
 Strand = Plus / Minus

                                                                        
Query: 279  tcctcttcaagctcatcaaactcccacccgctgatctcctcgcctgagtaatctttgcca 338
            |||||||| |||||||| |||||||||||| | |||||||| |||||  ||||| || | 
Sbjct: 2384 tcctcttcgagctcatcgaactcccacccgttaatctcctcacctgaaaaatctctgtcc 2325

                                                                        
Query: 339  tcctttccaaagtctcctcccaggtttgcaaattcagaatcaggatccagctgatactgc 398
            |||  |||||  ||| ||||||||||||| |  |||   ||||||| ||| ||      |
Sbjct: 2324 tccgatccaagttctgctcccaggtttgcgagctcattgtcaggattcagatg------c 2271

                                                                        
Query: 399  tgctcaggcttcatgggagattttggggagtcgacgtgcgcagctttgggggtaacaggt 458
            ||||| |||||||||||||||||||| ||||||||||| ||||| || || ||| | |||
Sbjct: 2270 tgctcgggcttcatgggagattttggagagtcgacgtgtgcagccttaggcgtagcgggt 2211

                                                                        
Query: 459  gcttggataggcgaagggctcaagtctgatctttcctcaggcagtggctttgatttgtgg 518
            || ||||| || ||||||||||| || ||||| |||||||| |||||||||||||| |  
Sbjct: 2210 gcctggattggtgaagggctcaattcagatctctcctcaggtagtggctttgatttatta 2151

                                                                        
Query: 519  gtcttcaatgcttagtgttggccctttctatagattcaaatgcttccctcagtttctcga 578
            | |||| ||||||||  |||| ||||||||||||||||||| || |||||| ||||||||
Sbjct: 2150 g-cttctatgcttagcattgg-cctttctatagattcaaattctcccctcaatttctcga 2093

                                                      
Query: 579  tctcgtcaattaggctcttgacctctgggtcatctctcctag 620
            ||||| |||||||| ||||||||||||| |||||||||||||
Sbjct: 2092 tctcggcaattaggttcttgacctctggatcatctctcctag 2051

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>dbj|AK099832.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013106A22, full
            insert sequence
          Length = 2422

 Score =  204 bits (103), Expect = 2e-49
 Identities = 284/342 (83%), Gaps = 8/342 (2%)
 Strand = Plus / Minus

                                                                        
Query: 279  tcctcttcaagctcatcaaactcccacccgctgatctcctcgcctgagtaatctttgcca 338
            |||||||| |||||||| |||||||||||| | |||||||| |||||  ||||| || | 
Sbjct: 2123 tcctcttcgagctcatcgaactcccacccgttaatctcctcacctgaaaaatctctgtcc 2064

                                                                        
Query: 339  tcctttccaaagtctcctcccaggtttgcaaattcagaatcaggatccagctgatactgc 398
            |||  |||||  ||| ||||||||||||| |  |||   ||||||| ||| ||      |
Sbjct: 2063 tccgatccaagttctgctcccaggtttgcgagctcattgtcaggattcagatg------c 2010

                                                                        
Query: 399  tgctcaggcttcatgggagattttggggagtcgacgtgcgcagctttgggggtaacaggt 458
            ||||| |||||||||||||||||||| ||||||||||| ||||| || || ||| | |||
Sbjct: 2009 tgctcgggcttcatgggagattttggagagtcgacgtgtgcagccttaggcgtagcgggt 1950

                                                                        
Query: 459  gcttggataggcgaagggctcaagtctgatctttcctcaggcagtggctttgatttgtgg 518
            || ||||| || ||||||||||| || ||||| |||||||| |||||||||||||| |  
Sbjct: 1949 gcctggattggtgaagggctcaattcagatctctcctcaggtagtggctttgatttatta 1890

                                                                        
Query: 519  gtcttcaatgcttagtgttggccctttctatagattcaaatgcttccctcagtttctcga 578
            | |||| ||||||||  |||| ||||||||||||||||||| || |||||| ||||||||
Sbjct: 1889 g-cttctatgcttagcattgg-cctttctatagattcaaattctcccctcaatttctcga 1832

                                                      
Query: 579  tctcgtcaattaggctcttgacctctgggtcatctctcctag 620
            ||||| |||||||| ||||||||||||| |||||||||||||
Sbjct: 1831 tctcggcaattaggttcttgacctctggatcatctctcctag 1790



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 40/43 (93%), Gaps = 1/43 (2%)
 Strand = Plus / Minus

                                                       
Query: 90   tcatggcaagaacaaacaaatagcaactgctttgccaaggtta 132
            ||||||||||| |||||||||||||| ||| ||||||||||||
Sbjct: 2315 tcatggcaaga-caaacaaatagcaaatgccttgccaaggtta 2274

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>gb|AC124144.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0099P06, complete sequence
          Length = 135117

 Score =  200 bits (101), Expect = 4e-48
 Identities = 282/340 (82%), Gaps = 8/340 (2%)
 Strand = Plus / Plus

                                                                         
Query: 279   tcctcttcaagctcatcaaactcccacccgctgatctcctcgcctgagtaatctttgcca 338
             |||||||| |||||||| |||||||||||| | |||||||| |||||  ||||| || | 
Sbjct: 14915 tcctcttcgagctcatcgaactcccacccgttaatctcctcacctgaaaaatctctgtcc 14974

                                                                         
Query: 339   tcctttccaaagtctcctcccaggtttgcaaattcagaatcaggatccagctgatactgc 398
             |||  |||||  ||| ||||||||||||| |  |||   ||||||| ||| ||      |
Sbjct: 14975 tccgatccaagttctgctcccaggtttgcgagctcattgtcaggattcagatg------c 15028

                                                                         
Query: 399   tgctcaggcttcatgggagattttggggagtcgacgtgcgcagctttgggggtaacaggt 458
             ||||| |||||||||||||||||||| ||||||||||| ||||| || || ||| | |||
Sbjct: 15029 tgctcgggcttcatgggagattttggagagtcgacgtgtgcagccttaggcgtagcgggt 15088

                                                                         
Query: 459   gcttggataggcgaagggctcaagtctgatctttcctcaggcagtggctttgatttgtgg 518
             || ||||| || ||||||||||| || ||||| |||||||| |||||||||||||| |  
Sbjct: 15089 gcctggattggtgaagggctcaattcagatctctcctcaggtagtggctttgatttatta 15148

                                                                         
Query: 519   gtcttcaatgcttagtgttggccctttctatagattcaaatgcttccctcagtttctcga 578
             | |||| ||||||||  |||| ||||||||||||||||||| || |||||| ||||||||
Sbjct: 15149 g-cttctatgcttagcattgg-cctttctatagattcaaattctcccctcaatttctcga 15206

                                                     
Query: 579   tctcgtcaattaggctcttgacctctgggtcatctctcct 618
             ||||| |||||||| ||||||||||||| |||||||||||
Sbjct: 15207 tctcggcaattaggttcttgacctctggatcatctctcct 15246



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 40/43 (93%), Gaps = 1/43 (2%)
 Strand = Plus / Plus

                                                        
Query: 90    tcatggcaagaacaaacaaatagcaactgctttgccaaggtta 132
             ||||||||||| |||||||||||||| ||| ||||||||||||
Sbjct: 14723 tcatggcaaga-caaacaaatagcaaatgccttgccaaggtta 14764

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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score =  200 bits (101), Expect = 4e-48
 Identities = 282/340 (82%), Gaps = 8/340 (2%)
 Strand = Plus / Plus

                                                                           
Query: 279     tcctcttcaagctcatcaaactcccacccgctgatctcctcgcctgagtaatctttgcca 338
               |||||||| |||||||| |||||||||||| | |||||||| |||||  ||||| || | 
Sbjct: 3592568 tcctcttcgagctcatcgaactcccacccgttaatctcctcacctgaaaaatctctgtcc 3592627

                                                                           
Query: 339     tcctttccaaagtctcctcccaggtttgcaaattcagaatcaggatccagctgatactgc 398
               |||  |||||  ||| ||||||||||||| |  |||   ||||||| ||| ||      |
Sbjct: 3592628 tccgatccaagttctgctcccaggtttgcgagctcattgtcaggattcagatg------c 3592681

                                                                           
Query: 399     tgctcaggcttcatgggagattttggggagtcgacgtgcgcagctttgggggtaacaggt 458
               ||||| |||||||||||||||||||| ||||||||||| ||||| || || ||| | |||
Sbjct: 3592682 tgctcgggcttcatgggagattttggagagtcgacgtgtgcagccttaggcgtagcgggt 3592741

                                                                           
Query: 459     gcttggataggcgaagggctcaagtctgatctttcctcaggcagtggctttgatttgtgg 518
               || ||||| || ||||||||||| || ||||| |||||||| |||||||||||||| |  
Sbjct: 3592742 gcctggattggtgaagggctcaattcagatctctcctcaggtagtggctttgatttatta 3592801

                                                                           
Query: 519     gtcttcaatgcttagtgttggccctttctatagattcaaatgcttccctcagtttctcga 578
               | |||| ||||||||  |||| ||||||||||||||||||| || |||||| ||||||||
Sbjct: 3592802 g-cttctatgcttagcattgg-cctttctatagattcaaattctcccctcaatttctcga 3592859

                                                       
Query: 579     tctcgtcaattaggctcttgacctctgggtcatctctcct 618
               ||||| |||||||| ||||||||||||| |||||||||||
Sbjct: 3592860 tctcggcaattaggttcttgacctctggatcatctctcct 3592899



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 40/43 (93%), Gaps = 1/43 (2%)
 Strand = Plus / Plus

                                                          
Query: 90      tcatggcaagaacaaacaaatagcaactgctttgccaaggtta 132
               ||||||||||| |||||||||||||| ||| ||||||||||||
Sbjct: 3592376 tcatggcaaga-caaacaaatagcaaatgccttgccaaggtta 3592417

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>dbj|AK072427.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023089J15, full
            insert sequence
          Length = 2428

 Score =  196 bits (99), Expect = 6e-47
 Identities = 283/342 (82%), Gaps = 8/342 (2%)
 Strand = Plus / Minus

                                                                        
Query: 279  tcctcttcaagctcatcaaactcccacccgctgatctcctcgcctgagtaatctttgcca 338
            |||||||| |||||||| |||||||||||| | |||||||| |||||  ||||| || | 
Sbjct: 2128 tcctcttcgagctcatcgaactcccacccgttaatctcctcacctgaaaaatctctgtcc 2069

                                                                        
Query: 339  tcctttccaaagtctcctcccaggtttgcaaattcagaatcaggatccagctgatactgc 398
            |||  |||||  ||| ||||||||||||| |  |||   ||||||| ||| ||      |
Sbjct: 2068 tccgatccaagttctgctcccaggtttgcgagctcattgtcaggattcagatg------c 2015

                                                                        
Query: 399  tgctcaggcttcatgggagattttggggagtcgacgtgcgcagctttgggggtaacaggt 458
            ||||| |||||||||||||||||||| ||||||||||| ||||| || || ||| | |||
Sbjct: 2014 tgctcgggcttcatgggagattttggagagtcgacgtgtgcagccttaggcgtagcgggt 1955

                                                                        
Query: 459  gcttggataggcgaagggctcaagtctgatctttcctcaggcagtggctttgatttgtgg 518
            ||  |||| || ||||||||||| || ||||| |||||||| |||||||||||||| |  
Sbjct: 1954 gcccggattggtgaagggctcaattcagatctctcctcaggtagtggctttgatttatta 1895

                                                                        
Query: 519  gtcttcaatgcttagtgttggccctttctatagattcaaatgcttccctcagtttctcga 578
            | |||| ||||||||  |||| ||||||||||||||||||| || |||||| ||||||||
Sbjct: 1894 g-cttctatgcttagcattgg-cctttctatagattcaaattctcccctcaatttctcga 1837

                                                      
Query: 579  tctcgtcaattaggctcttgacctctgggtcatctctcctag 620
            ||||| |||||||| ||||||||||||| |||||||||||||
Sbjct: 1836 tctcggcaattaggttcttgacctctggatcatctctcctag 1795



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 40/43 (93%), Gaps = 1/43 (2%)
 Strand = Plus / Minus

                                                       
Query: 90   tcatggcaagaacaaacaaatagcaactgctttgccaaggtta 132
            ||||||||||| |||||||||||||| ||| ||||||||||||
Sbjct: 2320 tcatggcaaga-caaacaaatagcaaatgccttgccaaggtta 2279

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>ref|XM_550189.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1578

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                   
Query: 278  ctcctcttcaagctcatcaaactcccacccgctgatctc 316
            |||||||||||| || |||||||||||||| || |||||
Sbjct: 1309 ctcctcttcaagttcgtcaaactcccacccacttatctc 1271

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>gb|AC140347.3| Mus musculus BAC clone RP23-233K3 from chromosome 7, complete sequence
          Length = 153366

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 591   ggctcttgacctctgggtcatctctcc 617
             ||||||||||||||||| |||||||||
Sbjct: 96331 ggctcttgacctctgggccatctctcc 96357

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>gb|AC154911.4| Mus musculus BAC clone RP23-25I3 from chromosome 7, complete sequence
          Length = 228885

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 591    ggctcttgacctctgggtcatctctcc 617
              ||||||||||||||||| |||||||||
Sbjct: 201744 ggctcttgacctctgggccatctctcc 201770

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                      
Query: 278     ctcctcttcaagctcatcaaactcccacccgctgatctc 316
               |||||||||||| || |||||||||||||| || |||||
Sbjct: 2970399 ctcctcttcaagttcgtcaaactcccacccacttatctc 2970437

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>dbj|AP003225.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0011G08
          Length = 139490

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                    
Query: 278   ctcctcttcaagctcatcaaactcccacccgctgatctc 316
             |||||||||||| || |||||||||||||| || |||||
Sbjct: 51916 ctcctcttcaagttcgtcaaactcccacccacttatctc 51954

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>dbj|AK063770.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-B11, full
            insert sequence
          Length = 1577

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                   
Query: 278  ctcctcttcaagctcatcaaactcccacccgctgatctc 316
            |||||||||||| || |||||||||||||| || |||||
Sbjct: 1308 ctcctcttcaagttcgtcaaactcccacccacttatctc 1270

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>gb|AC161342.10| Mus musculus chromosome 1, clone RP23-313K17, complete sequence
          Length = 181572

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 595   cttgacctctgggtcatctctc 616
             ||||||||||||||||||||||
Sbjct: 82615 cttgacctctgggtcatctctc 82636

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>gb|AC115858.14| Mus musculus chromosome 7, clone RP24-285C16, complete sequence
          Length = 175843

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 592    gctcttgacctctgggtcatctctcc 617
              |||||| |||||||||||||||||||
Sbjct: 121538 gctcttaacctctgggtcatctctcc 121513

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 282     tcttcaagctcatcaaactcccaccc 307
               |||||||| |||||||||||||||||
Sbjct: 9592009 tcttcaaggtcatcaaactcccaccc 9592034

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>gb|AC084405.6| Oryza sativa chromosome 3 BAC OSJNBa0044H10 genomic sequence, complete
             sequence
          Length = 165113

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 282   tcttcaagctcatcaaactcccaccc 307
             |||||||| |||||||||||||||||
Sbjct: 12908 tcttcaaggtcatcaaactcccaccc 12933

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>emb|AL662868.15| Mouse DNA sequence from clone RP23-144P24 on chromosome 11 Contains
             three novel genes, the 5' end of the Galnt9 gene for
             UDP-N-acetyl-alpha-D-galactosamine: polypeptide
             N-acetylgalactosaminyltransferase 9 and a CpG island,
             complete sequence
          Length = 198647

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 592   gctcttgacctctgggtcatctctcc 617
             |||||| |||||||||||||||||||
Sbjct: 26980 gctcttaacctctgggtcatctctcc 26955

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>gb|AE014181.1| Mus musculus piebald deletion region section 9 of 11 of the complete
              sequence
          Length = 400029

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 592    gctcttgacctctgggtcatctctcc 617
              |||||||||||||||| |||||||||
Sbjct: 378297 gctcttgacctctgggccatctctcc 378272

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 282     tcttcaagctcatcaaactcccaccc 307
               |||||||| |||||||||||||||||
Sbjct: 9590130 tcttcaaggtcatcaaactcccaccc 9590155

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>gb|AC137069.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0009C19, from chromosome 3, complete sequence
          Length = 131709

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 282   tcttcaagctcatcaaactcccaccc 307
             |||||||| |||||||||||||||||
Sbjct: 20677 tcttcaaggtcatcaaactcccaccc 20652

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>dbj|AK107060.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-121-D12, full
            insert sequence
          Length = 2273

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 282  tcttcaagctcatcaaactcccaccc 307
            |||||||| |||||||||||||||||
Sbjct: 2091 tcttcaaggtcatcaaactcccaccc 2066

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>gb|AC151896.3| Mus musculus BAC clone RP24-501F15 from 18, complete sequence
          Length = 189528

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 592    gctcttgacctctgggtcatct 613
              ||||||||||||||||||||||
Sbjct: 101553 gctcttgacctctgggtcatct 101574

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>gb|AC147513.16| Mus musculus chromosome 1, clone RP23-105K16, complete sequence
          Length = 209834

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 595    cttgacctctgggtcatctctc 616
              ||||||||||||||||||||||
Sbjct: 122419 cttgacctctgggtcatctctc 122440

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>gb|AC125270.7| Mus musculus chromosome 5, clone RP24-150L20, complete sequence
          Length = 174834

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 592   gctcttgacctctgggtcatctctcc 617
             |||||||||||||| |||||||||||
Sbjct: 59310 gctcttgacctctgagtcatctctcc 59335

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>gb|AC116748.8| Mus musculus chromosome 9, clone RP23-80L8, complete sequence
          Length = 268886

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 592   gctcttgacctctgggtcatctctc 616
             |||||||||| ||||||||||||||
Sbjct: 24252 gctcttgaccactgggtcatctctc 24228

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>gb|AC164088.2| Mus musculus BAC clone RP23-65F24 from chromosome 16, complete sequence
          Length = 240181

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 337   catcctttccaaagtctcctcccag 361
             ||||||||||| |||||||||||||
Sbjct: 19066 catcctttccagagtctcctcccag 19090

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>gb|AC174233.4| Pan troglodytes BAC clone CH251-560K10 from chromosome unknown,
             complete sequence
          Length = 179813

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 496   caggcagtggctttgatttgt 516
             |||||||||||||||||||||
Sbjct: 88615 caggcagtggctttgatttgt 88635

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>gb|AC006327.3| Homo sapiens BAC clone RP11-59I21 from 2, complete sequence
          Length = 92705

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 496   caggcagtggctttgatttgt 516
             |||||||||||||||||||||
Sbjct: 90155 caggcagtggctttgatttgt 90135

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>gb|AC119978.7| Mus musculus chromosome 9, clone RP24-487D12, complete sequence
          Length = 177091

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 592    gctcttgacctctgggtcatctctc 616
              |||||||||| ||||||||||||||
Sbjct: 105309 gctcttgaccactgggtcatctctc 105285

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>emb|CT010457.7| Mouse DNA sequence from clone RP23-96M8 on chromosome 9, complete
              sequence
          Length = 259964

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 592    gctcttgacctctgggtcatctctc 616
              |||||||||| ||||||||||||||
Sbjct: 168925 gctcttgaccactgggtcatctctc 168901

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>emb|AL840635.6| Mouse DNA sequence from clone RP23-418D21 on chromosome 2, complete
              sequence
          Length = 201328

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 592    gctcttgacctctgggtcatctctc 616
              |||||| ||||||||||||||||||
Sbjct: 196632 gctcttaacctctgggtcatctctc 196656

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>ref|NM_112383.1| Arabidopsis thaliana unknown protein AT3G15200 mRNA, complete cds
          Length = 1572

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 330  tctttgccatcctttccaaa 349
            ||||||||||||||||||||
Sbjct: 1243 tctttgccatcctttccaaa 1224

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>gb|AC112962.15| Mus musculus chromosome 19, clone RP24-74N6, complete sequence
          Length = 182999

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 590  aggctcttgacctctgggtcatctctcc 617
            |||||||| ||||||| |||||||||||
Sbjct: 1070 aggctcttaacctctgagtcatctctcc 1043

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>gb|AC159319.2| Mus musculus BAC clone RP23-37C8 from chromosome 9, complete sequence
          Length = 175636

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 554    tcaaatgcttccctcagttt 573
              ||||||||||||||||||||
Sbjct: 134330 tcaaatgcttccctcagttt 134349

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>emb|CT010488.9| Mouse DNA sequence from clone RP23-133A3 on chromosome 9, complete
              sequence
          Length = 219139

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 592    gctcttgacctctgggtcatctct 615
              |||||||||||||| |||||||||
Sbjct: 173093 gctcttgacctctgagtcatctct 173116

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>gb|AC125144.3| Mus musculus BAC clone RP24-346C2 from chromosome 6, complete sequence
          Length = 171156

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 508   ttgatttgtgggtcttcaat 527
             ||||||||||||||||||||
Sbjct: 92920 ttgatttgtgggtcttcaat 92939

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>gb|AC123834.4| Mus musculus BAC clone RP24-132N9 from chromosome 13, complete sequence
          Length = 153028

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 590   aggctcttgacctctgggtcatctctcc 617
             |||||||| ||||||| |||||||||||
Sbjct: 39977 aggctcttaacctctgagtcatctctcc 39950

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>gb|AC137693.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OJ1111_B01,
             complete sequence
          Length = 136068

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 85    catggtcatggcaagaacaa 104
             ||||||||||||||||||||
Sbjct: 56759 catggtcatggcaagaacaa 56778

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>gb|AC107611.6| Rattus norvegicus 10 BAC CH230-195I24 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 211076

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 592    gctcttgacctctgggtcatctct 615
              |||||||||| |||||||||||||
Sbjct: 104511 gctcttgaccactgggtcatctct 104534

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>emb|AL356093.20| Human DNA sequence from clone RP11-382K22 on chromosome 10 Contains a
             ribosomal protein L7 (RPL7) pseudogene, complete sequence
          Length = 200536

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 194   agaactggagacacatgtca 213
             ||||||||||||||||||||
Sbjct: 49252 agaactggagacacatgtca 49271

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>gb|AC041039.8| Homo sapiens chromosome 8, clone RP11-273P3, complete sequence
          Length = 159332

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 479   caagtctgatctttcctcag 498
             ||||||||||||||||||||
Sbjct: 23360 caagtctgatctttcctcag 23341

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>gb|AC022721.9| Homo sapiens, clone RP11-191H13, complete sequence
          Length = 164354

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 479   caagtctgatctttcctcag 498
             ||||||||||||||||||||
Sbjct: 16343 caagtctgatctttcctcag 16362

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>gb|AC091020.10| Homo sapiens chromosome 18, clone RP11-701C7, complete sequence
          Length = 184164

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 265   tcagcattcagctctcctct 284
             ||||||||||||||||||||
Sbjct: 18696 tcagcattcagctctcctct 18677

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>gb|AC090466.5| Homo sapiens chromosome 8, clone RP11-619O19, complete sequence
          Length = 191049

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 479    caagtctgatctttcctcag 498
              ||||||||||||||||||||
Sbjct: 179853 caagtctgatctttcctcag 179872

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>gb|AC011804.6| Homo sapiens chromosome 18, clone RP11-71F23, complete sequence
          Length = 205174

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 265   tcagcattcagctctcctct 284
             ||||||||||||||||||||
Sbjct: 52677 tcagcattcagctctcctct 52658

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>gb|AC157916.2| Mus musculus chromosome 19, clone RP24-330P23, complete sequence
          Length = 190666

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 590   aggctcttgacctctgggtcatctctcc 617
             |||||||| ||||||| |||||||||||
Sbjct: 91934 aggctcttaacctctgagtcatctctcc 91961

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>gb|AC109644.2| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone
            P0459F09, complete sequence
          Length = 143533

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 85   catggtcatggcaagaacaa 104
            ||||||||||||||||||||
Sbjct: 1727 catggtcatggcaagaacaa 1746

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>gb|AC144559.1| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone
            P0459F09, complete sequence
          Length = 143533

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 85   catggtcatggcaagaacaa 104
            ||||||||||||||||||||
Sbjct: 1727 catggtcatggcaagaacaa 1746

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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 85       catggtcatggcaagaacaa 104
                ||||||||||||||||||||
Sbjct: 20434480 catggtcatggcaagaacaa 20434461

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>gb|AC098858.3| Homo sapiens BAC clone RP11-149A7 from 4, complete sequence
          Length = 172419

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 121   ttgccaaggttacagggggtgcaa 144
             ||||||||||||||| ||||||||
Sbjct: 61751 ttgccaaggttacagagggtgcaa 61774

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>gb|AC102797.5| Homo sapiens chromosome 18, clone RP11-157P23, complete sequence
          Length = 179632

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 265   tcagcattcagctctcctct 284
             ||||||||||||||||||||
Sbjct: 60254 tcagcattcagctctcctct 60273

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>emb|BX511205.2|RN120J22 Rattus norvegicus chromosome 1 BAC RP32-120J22, complete sequence
          Length = 160764

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 590    aggctcttgacctctgggtcatctctcc 617
              |||||||| ||||||| |||||||||||
Sbjct: 155259 aggctcttaacctctgagtcatctctcc 155286

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>dbj|AP001299.1| Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone:F4B12
          Length = 37262

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 330   tctttgccatcctttccaaa 349
             ||||||||||||||||||||
Sbjct: 34571 tctttgccatcctttccaaa 34590

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>emb|AJ328235.1|HSA328235 Homo sapiens genomic sequence surrounding NotI site, clone
           NL4-CA19RS
          Length = 754

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 303 cacccgctgatctcctcgcc 322
           ||||||||||||||||||||
Sbjct: 94  cacccgctgatctcctcgcc 75

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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 85       catggtcatggcaagaacaa 104
                ||||||||||||||||||||
Sbjct: 20744714 catggtcatggcaagaacaa 20744695

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>gb|AC137708.16| Mus musculus chromosome 3, clone RP24-277H8, complete sequence
          Length = 154779

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 591   ggctcttgacctctgggtcatctc 614
             ||||||| ||||||||||||||||
Sbjct: 43332 ggctcttaacctctgggtcatctc 43309

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>emb|AL672081.6| Mouse DNA sequence from clone RP23-319D17 on chromosome X, complete
              sequence
          Length = 194141

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 511    atttgtgggtcttcaatgct 530
              ||||||||||||||||||||
Sbjct: 120108 atttgtgggtcttcaatgct 120089

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>emb|AL606746.17| Mouse DNA sequence from clone RP23-423J10 on chromosome 3, complete
             sequence
          Length = 203345

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 591   ggctcttgacctctgggtcatctc 614
             ||||||| ||||||||||||||||
Sbjct: 23946 ggctcttaacctctgggtcatctc 23969

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>emb|AL929175.6| Mouse DNA sequence from clone RP23-456N11 on chromosome 2, complete
             sequence
          Length = 123489

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 592   gctcttgacctctgggtcatctct 615
             |||||||||||||| |||||||||
Sbjct: 67563 gctcttgacctctgagtcatctct 67586


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,493,088
Number of Sequences: 3902068
Number of extensions: 5493088
Number of successful extensions: 97215
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 96927
Number of HSP's gapped (non-prelim): 283
length of query: 620
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 597
effective length of database: 17,143,297,704
effective search space: 10234548729288
effective search space used: 10234548729288
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result