>PTRB_MORLA (Q59536) Protease 2 (EC 3.4.21.83) (Protease II) (Oligopeptidase B)|
          Length = 690

 Score =  138 bits (347), Expect = 1e-32
 Identities = 65/108 (60%), Positives = 78/108 (72%)
 Frame = -2

Query: 563 PLTTAEWEEWGDPRXXXXXXXXXXXSPVDNVTAQDYPHILVTAGLNDPRVMYSEPAKFVA 384
           PLTT EW+EWGDPR           SP DNV A+DYPH+ +T G+NDPRV Y EPAK+VA
Sbjct: 573 PLTTLEWDEWGDPRKQEDYFYMKSYSPYDNVEAKDYPHMYITTGINDPRVGYFEPAKWVA 632

Query: 383 KLRELKTDNNLLLFKCELGAGHFSKSGRFEKLREDAFTYAFILKALGM 240
           +LR +KTDNN L+ K  +GAGHF KSGRF  L+E A +YAFIL  LG+
Sbjct: 633 RLRAVKTDNNTLVMKTNMGAGHFGKSGRFNHLKEAAESYAFILDKLGV 680

>PTRB_ECOLI (P24555) Protease 2 (EC 3.4.21.83) (Protease II) (Oligopeptidase B)|
          Length = 686

 Score =  117 bits (294), Expect = 2e-26
 Identities = 63/120 (52%), Positives = 79/120 (65%), Gaps = 1/120 (0%)
 Frame = -2

Query: 578 LTQLSPLTTAEWEEWGDPRXXXXXXXXXXXSPVDNVTAQDYPHILVTAGLNDPRVMYSEP 399
           L +  PLTT E+EEWG+P+           SP DNVTAQ YPH+LVT GL+D +V Y EP
Sbjct: 566 LDESIPLTTGEFEEWGNPQDPQYYEYMKSYSPYDNVTAQAYPHLLVTTGLHDSQVQYWEP 625

Query: 398 AKFVAKLRELKTDNNLLLFKCELGAGHFSKSGRFEKLREDAFTYAFILK-ALGMTPPTAA 222
           AK+VAKLRELKTD++LLL   ++ +GH  KSGRF+     A  YAF++  A G  P T A
Sbjct: 626 AKWVAKLRELKTDDHLLLLCTDMDSGHGGKSGRFKSYEGVAMEYAFLVALAQGTLPATPA 685

>Y4SO_RHISN (P55656) Probable peptidase y4sO (EC 3.4.21.-)|
          Length = 705

 Score = 53.5 bits (127), Expect = 4e-07
 Identities = 35/111 (31%), Positives = 52/111 (46%), Gaps = 2/111 (1%)
 Frame = -2

Query: 563 PLTTAEWEEWGDPRXXXXXXXXXXXSPVDNVTA-QDYPHILVTAGLNDPRVMYSEPAKFV 387
           P    E  E+GDP             P  N+T  + YP   + A L+D +V+Y +PA++V
Sbjct: 593 PYALRETAEYGDPHLANDYQYLRSYDPYYNLTPDRRYPPTYIDAALHDSQVLYYQPARYV 652

Query: 386 AKLRELKTDNNL-LLFKCELGAGHFSKSGRFEKLREDAFTYAFILKALGMT 237
           A+ R    D +  L+F+  +  GH   S       E AF  A+IL  LG +
Sbjct: 653 AQRRSKAVDRDPDLIFRTRMIGGHMGVSHGPGVAEEAAFRMAWILHRLGQS 703

>Y4QF_RHISN (P55627) Probable peptidase y4qF (EC 3.4.21.-)|
          Length = 754

 Score = 50.1 bits (118), Expect = 5e-06
 Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 2/118 (1%)
 Frame = -2

Query: 578 LTQLSPLTTAEWEEWGDPRXXXXXXXXXXXSPVDNVTAQ-DYPHILVTAGLNDPRVMYSE 402
           L    P T  E  E+GDP+            P  N++ +   P   V A L+D +V+Y +
Sbjct: 619 LDSTMPYTLKETAEYGDPQDAYEYRYLRSYDPYYNLSPERSLPPTYVDAALDDGQVIYYQ 678

Query: 401 PAKFVAKLRELKTDNNL-LLFKCELGAGHFSKSGRFEKLREDAFTYAFILKALGMTPP 231
           PA++VA+ R   TD +  L+F+  +  GH   S       + AF  A++L  L    P
Sbjct: 679 PARYVAQRRSCATDRDPDLVFRIRMVGGHSGPSHGPGIAEQAAFRMAWVLDQLRSHAP 736

>COOS1_CARHZ (P59934) Carbon monoxide dehydrogenase 1 (EC 1.2.99.2) (CODH 1)|
          Length = 635

 Score = 36.6 bits (83), Expect = 0.056
 Identities = 29/108 (26%), Positives = 53/108 (49%), Gaps = 3/108 (2%)
 Frame = -2

Query: 482 VDNVTAQDYPHILVTAGLNDPRVMYSEPAKFVAKLRELKTDNNLLLFKCELGAGHFSKSG 303
           +DN+   +   I + AG N+P+ ++     F+   +EL   NN+L+     GAG F+K+G
Sbjct: 430 IDNIINGNIQGIALFAGCNNPKAIHDN--SFITIAKEL-AKNNVLMLATGCGAGAFAKNG 486

Query: 302 RFEKLREDAF---TYAFILKALGMTPPTAASSL*RVHIFIVAVSNCVD 168
              +   +A+   +   +L ALG      A+ L      ++ + +CVD
Sbjct: 487 LMTQEATEAYAGESLKAVLTALG-----KAAGLNGPLPLVLHMGSCVD 529

>PPCE_AERHY (Q06903) Prolyl endopeptidase (EC 3.4.21.26) (Post-proline cleaving|
           enzyme) (PE)
          Length = 689

 Score = 36.6 bits (83), Expect = 0.056
 Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
 Frame = -2

Query: 485 PVDNVTAQ-DYPHILVTAGLNDPRVMYSEPAKFVAKLRELKTDNNLLLFKCELGAGHFSK 309
           P+ +V A   YP  LVT   +D RV+ +   KF A L+      +  L + E  AGH + 
Sbjct: 600 PLHSVRAGVSYPSTLVTTADHDDRVVPAHSFKFAATLQADDAGPHPQLIRIETNAGHGAG 659

Query: 308 SGRFEKLREDAFTYAFILKALG 243
           +   + + + A  YAF L  +G
Sbjct: 660 TPVAKLIEQSADIYAFTLFEMG 681

>PPCE_BOVIN (Q9XTA2) Prolyl endopeptidase (EC 3.4.21.26) (Post-proline cleaving|
           enzyme) (PE)
          Length = 710

 Score = 35.8 bits (81), Expect = 0.096
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
 Frame = -2

Query: 458 YPHILVTAGLNDPRVMYSEPAKFVAKLREL----KTDNNLLLFKCELGAGHFSKSGRFEK 291
           YP +L+    +D RV+     KF+A L+ L    +  NN LL   +  AGH +     + 
Sbjct: 630 YPSMLLLTADHDDRVVPLHSPKFIATLQHLVGRSRKQNNPLLIHVDTKAGHGAGKPTAKV 689

Query: 290 LREDAFTYAFILKALGM 240
           + E +  +AFI + L +
Sbjct: 690 IEEVSDMFAFIARCLNI 706

>PPCE_PIG (P23687) Prolyl endopeptidase (EC 3.4.21.26) (Post-proline cleaving|
           enzyme) (PE)
          Length = 710

 Score = 34.3 bits (77), Expect = 0.28
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
 Frame = -2

Query: 458 YPHILVTAGLNDPRVMYSEPAKFVAKLREL----KTDNNLLLFKCELGAGHFSKSGRFEK 291
           YP +L+    +D RV+     KF+A L+ +    +  NN LL   +  AGH +     + 
Sbjct: 630 YPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGHGAGKPTAKV 689

Query: 290 LREDAFTYAFILKALGM 240
           + E +  +AFI + L +
Sbjct: 690 IEEVSDMFAFIARCLNI 706

>PPCE_MOUSE (Q9QUR6) Prolyl endopeptidase (EC 3.4.21.26) (Post-proline cleaving|
           enzyme) (PE)
          Length = 710

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
 Frame = -2

Query: 458 YPHILVTAGLNDPRVMYSEPAKFVAKLREL----KTDNNLLLFKCELGAGHFSKSGRFEK 291
           YP +L+    +D RV+     KF+A L+ +    +  +N LL   +  AGH +     + 
Sbjct: 630 YPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQSNPLLIHVDTKAGHGAGKPTAKV 689

Query: 290 LREDAFTYAFILKALGM 240
           + E +  +AFI + L +
Sbjct: 690 IEEVSDMFAFIARCLNI 706

>PPCE_HUMAN (P48147) Prolyl endopeptidase (EC 3.4.21.26) (Post-proline cleaving|
           enzyme) (PE)
          Length = 710

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
 Frame = -2

Query: 458 YPHILVTAGLNDPRVMYSEPAKFVAKLREL----KTDNNLLLFKCELGAGHFSKSGRFEK 291
           YP +L+    +D RV+     KF+A L+ +    +  +N LL   +  AGH +     + 
Sbjct: 630 YPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQSNPLLIHVDTKAGHGAGKPTAKV 689

Query: 290 LREDAFTYAFILKALGM 240
           + E +  +AFI + L +
Sbjct: 690 IEEVSDMFAFIARCLNV 706

>GIDA_XYLFT (Q87DB3) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gidA (Glucose-inhibited division protein A)
          Length = 629

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 22/74 (29%), Positives = 33/74 (44%)
 Frame = -2

Query: 446 LVTAGLNDPRVMYSEPAKFVAKLRELKTDNNLLLFKCELGAGHFSKSGRFEKLREDAFTY 267
           L+T G N+P  M++  A++  +LRE   D  L     +LG    ++   F   +E     
Sbjct: 418 LITHGTNEPYRMFTSRAEYRLQLREDNADARLTAIGRDLGLVDDARWAHFNAKQEAVARE 477

Query: 266 AFILKALGMTPPTA 225
              L AL  TP  A
Sbjct: 478 CGRLSALWATPGNA 491

>GIDA2_FUSNN (Q8RI88) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gidA 2 (Glucose-inhibited division protein A 2)
          Length = 633

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 22/71 (30%), Positives = 32/71 (45%)
 Frame = -2

Query: 446 LVTAGLNDPRVMYSEPAKFVAKLRELKTDNNLLLFKCELGAGHFSKSGRFEKLREDAFTY 267
           LV+ G N+P  M++  +++   LRE   D  L     ELG     +  R EK R+D    
Sbjct: 421 LVSKGTNEPYRMFTARSEYRLYLREDNADLRLTKLGYELGLVPEEEYQRVEKKRKDVKII 480

Query: 266 AFILKALGMTP 234
             IL    + P
Sbjct: 481 TEILAKTNVGP 491

>GIDA_BURPS (Q63PG8) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gidA (Glucose-inhibited division protein A)
          Length = 657

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 21/73 (28%), Positives = 33/73 (45%)
 Frame = -2

Query: 446 LVTAGLNDPRVMYSEPAKFVAKLRELKTDNNLLLFKCELGAGHFSKSGRFEKLREDAFTY 267
           LVT G+++P  M++  A++   LRE   D  L     ELG     +   F + R+     
Sbjct: 418 LVTRGISEPYRMFTSRAEYRLSLREDNADMRLTEIGRELGVVDDVRWDAFNRKRDAVSRE 477

Query: 266 AFILKALGMTPPT 228
              L+   +TP T
Sbjct: 478 TERLRTTWVTPKT 490

>GIDA_SHIFL (Q83PJ6) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gidA (Glucose-inhibited division protein A)
          Length = 629

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 23/83 (27%), Positives = 36/83 (43%)
 Frame = -2

Query: 446 LVTAGLNDPRVMYSEPAKFVAKLRELKTDNNLLLFKCELGAGHFSKSGRFEKLREDAFTY 267
           L T G  +P  M++  A++   LRE   D  L     ELG     +  RF +  E+    
Sbjct: 417 LCTLGTKEPYRMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERE 476

Query: 266 AFILKALGMTPPTAASSL*RVHI 198
              LK+  +TP   A++    H+
Sbjct: 477 RQRLKSTWVTPSAEAAAEVNAHL 499

>GIDA_ECOLI (P0A6U3) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gidA (Glucose-inhibited division protein A)
          Length = 629

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 23/83 (27%), Positives = 36/83 (43%)
 Frame = -2

Query: 446 LVTAGLNDPRVMYSEPAKFVAKLRELKTDNNLLLFKCELGAGHFSKSGRFEKLREDAFTY 267
           L T G  +P  M++  A++   LRE   D  L     ELG     +  RF +  E+    
Sbjct: 417 LCTLGTKEPYRMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERE 476

Query: 266 AFILKALGMTPPTAASSL*RVHI 198
              LK+  +TP   A++    H+
Sbjct: 477 RQRLKSTWVTPSAEAAAEVNAHL 499

>GIDA_ECOL6 (P0A6U4) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gidA (Glucose-inhibited division protein A)
          Length = 629

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 23/83 (27%), Positives = 36/83 (43%)
 Frame = -2

Query: 446 LVTAGLNDPRVMYSEPAKFVAKLRELKTDNNLLLFKCELGAGHFSKSGRFEKLREDAFTY 267
           L T G  +P  M++  A++   LRE   D  L     ELG     +  RF +  E+    
Sbjct: 417 LCTLGTKEPYRMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERE 476

Query: 266 AFILKALGMTPPTAASSL*RVHI 198
              LK+  +TP   A++    H+
Sbjct: 477 RQRLKSTWVTPSAEAAAEVNAHL 499

>GIDA_ECO57 (Q8XAY0) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gidA (Glucose-inhibited division protein A)
          Length = 629

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 23/83 (27%), Positives = 36/83 (43%)
 Frame = -2

Query: 446 LVTAGLNDPRVMYSEPAKFVAKLRELKTDNNLLLFKCELGAGHFSKSGRFEKLREDAFTY 267
           L T G  +P  M++  A++   LRE   D  L     ELG     +  RF +  E+    
Sbjct: 417 LCTLGTKEPYRMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERE 476

Query: 266 AFILKALGMTPPTAASSL*RVHI 198
              LK+  +TP   A++    H+
Sbjct: 477 RQRLKSTWVTPSAEAAAEVNAHL 499

>GIDA_BURMA (Q62FS8) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gidA (Glucose-inhibited division protein A)
          Length = 657

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 21/73 (28%), Positives = 33/73 (45%)
 Frame = -2

Query: 446 LVTAGLNDPRVMYSEPAKFVAKLRELKTDNNLLLFKCELGAGHFSKSGRFEKLREDAFTY 267
           LVT G+++P  M++  A++   LRE   D  L     ELG     +   F + R+     
Sbjct: 418 LVTRGVSEPYRMFTSRAEYRLSLREDNADMRLTEIGRELGVVDDVRWDAFNRKRDAVSRE 477

Query: 266 AFILKALGMTPPT 228
              L+   +TP T
Sbjct: 478 TERLRTTWVTPKT 490

>GIDA_XYLFA (Q9PBN4) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gidA (Glucose-inhibited division protein A)
          Length = 629

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 21/74 (28%), Positives = 32/74 (43%)
 Frame = -2

Query: 446 LVTAGLNDPRVMYSEPAKFVAKLRELKTDNNLLLFKCELGAGHFSKSGRFEKLREDAFTY 267
           L+T G N+P  M++  A++  +LRE   D  L     +LG    ++   F   +E     
Sbjct: 418 LITHGTNEPYRMFTSRAEYRLQLREDNADARLTAIGRDLGLIDDARWAHFNAKQEAVARE 477

Query: 266 AFILKALGMTPPTA 225
              L A   TP  A
Sbjct: 478 CERLSAFWATPGNA 491

>GIDA_XANOR (Q5H6D9) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gidA (Glucose-inhibited division protein A)
          Length = 634

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 22/74 (29%), Positives = 33/74 (44%)
 Frame = -2

Query: 446 LVTAGLNDPRVMYSEPAKFVAKLRELKTDNNLLLFKCELGAGHFSKSGRFEKLREDAFTY 267
           L+T G  +P  M++  A++  +LRE   D  L     E+G    ++  RF   +E     
Sbjct: 423 LITHGTTEPYRMFTSRAEYRLQLREDNADARLTGAGREMGLVDDARWARFSAKQEAVQRE 482

Query: 266 AFILKALGMTPPTA 225
              L AL  TP  A
Sbjct: 483 TARLSALWATPGNA 496

>STAB1_HUMAN (Q9NY15) Stabilin-1 precursor (FEEL-1 protein) (MS-1 antigen)|
          Length = 2570

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = +3

Query: 279  VLSQLLKPPRLGEVPGAELTLEQQEVVVCLQL 374
            +LSQ+L PPR G+VPG +  L+Q ++V    L
Sbjct: 1113 ILSQVLLPPR-GDVPGGQGLLQQLDLVPAFSL 1143

>DDL_ENTHR (Q47827) D-alanine--D-alanine ligase (EC 6.3.2.4) (D-alanylalanine|
           synthetase) (D-Ala-D-Ala ligase)
          Length = 358

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = +3

Query: 231 WRSHPQRLEDECVGEGVLSQLLKPPRLGEVPGAELTLEQQEVVVCLQL 374
           W+ +P+++ D+C G  +    +KP  +G   G      ++E+   L L
Sbjct: 157 WKENPKKIFDQCEGSLLYPMFVKPANMGSSVGISKAENREELQNALAL 204

>GIDA_RHIME (Q92KW2) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gidA (Glucose-inhibited division protein A)
          Length = 623

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 19/71 (26%), Positives = 33/71 (46%)
 Frame = -2

Query: 446 LVTAGLNDPRVMYSEPAKFVAKLRELKTDNNLLLFKCELGAGHFSKSGRFEKLREDAFTY 267
           L + G+ +P  M++  A++   LR    D  L      LG    ++  RFE  +    T 
Sbjct: 413 LTSRGITEPYRMFTSRAEYRLSLRADNADMRLTPAGITLGCVGDARRQRFEAWKHSYETG 472

Query: 266 AFILKALGMTP 234
             +L++L +TP
Sbjct: 473 RTLLQSLSVTP 483

>HTRA1_HUMAN (Q92743) Serine protease HTRA1 precursor (EC 3.4.21.-) (L56)|
          Length = 480

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 15/31 (48%), Positives = 16/31 (51%)
 Frame = -1

Query: 462 RLSPHSRHCWLKRSSRDVLGAC*VCGEAEGA 370
           R  P   HC   R+ RD  G C VCG  EGA
Sbjct: 45  RCPPQPEHCEGGRA-RDACGCCEVCGAPEGA 74

>GIDA_NEIG1 (Q5F5Y0) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gidA (Glucose-inhibited division protein A)
          Length = 628

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 22/75 (29%), Positives = 34/75 (45%)
 Frame = -2

Query: 446 LVTAGLNDPRVMYSEPAKFVAKLRELKTDNNLLLFKCELGAGHFSKSGRFEKLREDAFTY 267
           L+T GLN+P  M++  A++  +LRE   D  L     ++G    ++   F + RE     
Sbjct: 417 LITKGLNEPYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKREAVERE 476

Query: 266 AFILKALGMTPPTAA 222
              LK    TP   A
Sbjct: 477 IQRLKTTWYTPQKLA 491


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,646,021
Number of Sequences: 219361
Number of extensions: 1514085
Number of successful extensions: 3480
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 3421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3473
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5216272880
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)