ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags4k14 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_185075.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1464 Score = 262 bits (132), Expect = 1e-66 Identities = 180/196 (91%) Strand = Plus / Minus Query: 428 tacacctcgtccagcttcttgaaggcagactcggtccagatcacaaaccggccaaggtgg 487 ||||||||||| ||||||||||| || |||||||||||||||| || |||||||||||| Sbjct: 855 tacacctcgtcgagcttcttgaacgcgcactcggtccagatcacgaagcggccaaggtgg 796 Query: 488 ccaccaggggcaaggtcgagcaggttgaggcgctcgacgttggcaacatccacacctggg 547 ||||||||||||||||||||||||||||||||||| || ||||||||||| || || ||| Sbjct: 795 ccaccaggggcaaggtcgagcaggttgaggcgctccacattggcaacatcaacgccgggg 736 Query: 548 aggttgcggaaggccttgacgatcttggagccctcggtgccgtagacgatgaggggtccc 607 ||||||||||| |||||||||| |||||| |||||||||||||||||||||||||| ||| Sbjct: 735 aggttgcggaaagccttgacgaccttggaaccctcggtgccgtagacgatgagggggccc 676 Query: 608 ttgcggttgatgtacc 623 ||||| |||||||||| Sbjct: 675 ttgcgattgatgtacc 660 Score = 125 bits (63), Expect = 2e-25 Identities = 93/103 (90%) Strand = Plus / Minus Query: 281 aactcggtgtagtcgctgtcagaaatcatggtctggtaccacgccttccctgcagccttg 340 ||||| |||||||| ||||||||||||||||| | |||||| ||||| || ||||||||| Sbjct: 1230 aactctgtgtagtcactgtcagaaatcatggttttgtaccatgcctttccagcagccttg 1171 Query: 341 atcttagatgcctcctccgcgctgagcttggtcctcttggagt 383 |||||||| | |||||||| ||||||||||||||||||||||| Sbjct: 1170 atcttagaagactcctccgggctgagcttggtcctcttggagt 1128
>gb|AC092076.7| Oryza sativa chromosome 3 BAC OSJNBb0021G19 genomic sequence, complete sequence Length = 141582 Score = 262 bits (132), Expect = 1e-66 Identities = 180/196 (91%) Strand = Plus / Minus Query: 428 tacacctcgtccagcttcttgaaggcagactcggtccagatcacaaaccggccaaggtgg 487 ||||||||||| ||||||||||| || |||||||||||||||| || |||||||||||| Sbjct: 38279 tacacctcgtcgagcttcttgaacgcgcactcggtccagatcacgaagcggccaaggtgg 38220 Query: 488 ccaccaggggcaaggtcgagcaggttgaggcgctcgacgttggcaacatccacacctggg 547 ||||||||||||||||||||||||||||||||||| || ||||||||||| || || ||| Sbjct: 38219 ccaccaggggcaaggtcgagcaggttgaggcgctccacattggcaacatcaacgccgggg 38160 Query: 548 aggttgcggaaggccttgacgatcttggagccctcggtgccgtagacgatgaggggtccc 607 ||||||||||| |||||||||| |||||| |||||||||||||||||||||||||| ||| Sbjct: 38159 aggttgcggaaagccttgacgaccttggaaccctcggtgccgtagacgatgagggggccc 38100 Query: 608 ttgcggttgatgtacc 623 ||||| |||||||||| Sbjct: 38099 ttgcgattgatgtacc 38084 Score = 83.8 bits (42), Expect = 6e-13 Identities = 69/78 (88%) Strand = Plus / Minus Query: 281 aactcggtgtagtcgctgtcagaaatcatggtctggtaccacgccttccctgcagccttg 340 ||||| |||||||| ||||||||||||||||| | |||||| ||||| || ||||||||| Sbjct: 39607 aactctgtgtagtcactgtcagaaatcatggttttgtaccatgcctttccagcagccttg 39548 Query: 341 atcttagatgcctcctcc 358 |||||||| | ||||||| Sbjct: 39547 atcttagaagactcctcc 39530 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 361 gctgagcttggtcctcttggagt 383 ||||||||||||||||||||||| Sbjct: 38574 gctgagcttggtcctcttggagt 38552
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 262 bits (132), Expect = 1e-66 Identities = 180/196 (91%) Strand = Plus / Plus Query: 428 tacacctcgtccagcttcttgaaggcagactcggtccagatcacaaaccggccaaggtgg 487 ||||||||||| ||||||||||| || |||||||||||||||| || |||||||||||| Sbjct: 32841262 tacacctcgtcgagcttcttgaacgcgcactcggtccagatcacgaagcggccaaggtgg 32841321 Query: 488 ccaccaggggcaaggtcgagcaggttgaggcgctcgacgttggcaacatccacacctggg 547 ||||||||||||||||||||||||||||||||||| || ||||||||||| || || ||| Sbjct: 32841322 ccaccaggggcaaggtcgagcaggttgaggcgctccacattggcaacatcaacgccgggg 32841381 Query: 548 aggttgcggaaggccttgacgatcttggagccctcggtgccgtagacgatgaggggtccc 607 ||||||||||| |||||||||| |||||| |||||||||||||||||||||||||| ||| Sbjct: 32841382 aggttgcggaaagccttgacgaccttggaaccctcggtgccgtagacgatgagggggccc 32841441 Query: 608 ttgcggttgatgtacc 623 ||||| |||||||||| Sbjct: 32841442 ttgcgattgatgtacc 32841457 Score = 83.8 bits (42), Expect = 6e-13 Identities = 69/78 (88%) Strand = Plus / Plus Query: 281 aactcggtgtagtcgctgtcagaaatcatggtctggtaccacgccttccctgcagccttg 340 ||||| |||||||| ||||||||||||||||| | |||||| ||||| || ||||||||| Sbjct: 32839934 aactctgtgtagtcactgtcagaaatcatggttttgtaccatgcctttccagcagccttg 32839993 Query: 341 atcttagatgcctcctcc 358 |||||||| | ||||||| Sbjct: 32839994 atcttagaagactcctcc 32840011 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 361 gctgagcttggtcctcttggagt 383 ||||||||||||||||||||||| Sbjct: 32840967 gctgagcttggtcctcttggagt 32840989
>gb|AC093713.6| Oryza sativa chromosome 3 BAC OSJNBa0094F01 genomic sequence, complete sequence Length = 151479 Score = 262 bits (132), Expect = 1e-66 Identities = 180/196 (91%) Strand = Plus / Minus Query: 428 tacacctcgtccagcttcttgaaggcagactcggtccagatcacaaaccggccaaggtgg 487 ||||||||||| ||||||||||| || |||||||||||||||| || |||||||||||| Sbjct: 148913 tacacctcgtcgagcttcttgaacgcgcactcggtccagatcacgaagcggccaaggtgg 148854 Query: 488 ccaccaggggcaaggtcgagcaggttgaggcgctcgacgttggcaacatccacacctggg 547 ||||||||||||||||||||||||||||||||||| || ||||||||||| || || ||| Sbjct: 148853 ccaccaggggcaaggtcgagcaggttgaggcgctccacattggcaacatcaacgccgggg 148794 Query: 548 aggttgcggaaggccttgacgatcttggagccctcggtgccgtagacgatgaggggtccc 607 ||||||||||| |||||||||| |||||| |||||||||||||||||||||||||| ||| Sbjct: 148793 aggttgcggaaagccttgacgaccttggaaccctcggtgccgtagacgatgagggggccc 148734 Query: 608 ttgcggttgatgtacc 623 ||||| |||||||||| Sbjct: 148733 ttgcgattgatgtacc 148718 Score = 83.8 bits (42), Expect = 6e-13 Identities = 69/78 (88%) Strand = Plus / Minus Query: 281 aactcggtgtagtcgctgtcagaaatcatggtctggtaccacgccttccctgcagccttg 340 ||||| |||||||| ||||||||||||||||| | |||||| ||||| || ||||||||| Sbjct: 150241 aactctgtgtagtcactgtcagaaatcatggttttgtaccatgcctttccagcagccttg 150182 Query: 341 atcttagatgcctcctcc 358 |||||||| | ||||||| Sbjct: 150181 atcttagaagactcctcc 150164 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 361 gctgagcttggtcctcttggagt 383 ||||||||||||||||||||||| Sbjct: 149208 gctgagcttggtcctcttggagt 149186
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 262 bits (132), Expect = 1e-66 Identities = 180/196 (91%) Strand = Plus / Plus Query: 428 tacacctcgtccagcttcttgaaggcagactcggtccagatcacaaaccggccaaggtgg 487 ||||||||||| ||||||||||| || |||||||||||||||| || |||||||||||| Sbjct: 32931772 tacacctcgtcgagcttcttgaacgcgcactcggtccagatcacgaagcggccaaggtgg 32931831 Query: 488 ccaccaggggcaaggtcgagcaggttgaggcgctcgacgttggcaacatccacacctggg 547 ||||||||||||||||||||||||||||||||||| || ||||||||||| || || ||| Sbjct: 32931832 ccaccaggggcaaggtcgagcaggttgaggcgctccacattggcaacatcaacgccgggg 32931891 Query: 548 aggttgcggaaggccttgacgatcttggagccctcggtgccgtagacgatgaggggtccc 607 ||||||||||| |||||||||| |||||| |||||||||||||||||||||||||| ||| Sbjct: 32931892 aggttgcggaaagccttgacgaccttggaaccctcggtgccgtagacgatgagggggccc 32931951 Query: 608 ttgcggttgatgtacc 623 ||||| |||||||||| Sbjct: 32931952 ttgcgattgatgtacc 32931967 Score = 83.8 bits (42), Expect = 6e-13 Identities = 69/78 (88%) Strand = Plus / Plus Query: 281 aactcggtgtagtcgctgtcagaaatcatggtctggtaccacgccttccctgcagccttg 340 ||||| |||||||| ||||||||||||||||| | |||||| ||||| || ||||||||| Sbjct: 32930444 aactctgtgtagtcactgtcagaaatcatggttttgtaccatgcctttccagcagccttg 32930503 Query: 341 atcttagatgcctcctcc 358 |||||||| | ||||||| Sbjct: 32930504 atcttagaagactcctcc 32930521 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 361 gctgagcttggtcctcttggagt 383 ||||||||||||||||||||||| Sbjct: 32931477 gctgagcttggtcctcttggagt 32931499
>gb|AY109806.1| Zea mays CL21852_1 mRNA sequence Length = 863 Score = 256 bits (129), Expect = 8e-65 Identities = 180/197 (91%) Strand = Plus / Minus Query: 425 ccgtacacctcgtccagcttcttgaaggcagactcggtccagatcacaaaccggccaagg 484 ||||||||||| |||||||||||||| || ||||||||||||| || ||||| |||||| Sbjct: 259 ccgtacacctcatccagcttcttgaatgcgcactcggtccagatgacgaaccgaccaagg 200 Query: 485 tggccaccaggggcaaggtcgagcaggttgaggcgctcgacgttggcaacatccacacct 544 |||||||||||||| |||||||||||||| ||||||||||| ||||||||||| || || Sbjct: 199 tggccaccaggggcgaggtcgagcaggttcaggcgctcgacattggcaacatcaacgcca 140 Query: 545 gggaggttgcggaaggccttgacgatcttggagccctcggtgccgtagacgatgaggggt 604 ||||||||||||||||||||||||||||| |||||||| | ||||||||| ||||||||| Sbjct: 139 gggaggttgcggaaggccttgacgatcttagagccctcagcgccgtagacaatgaggggt 80 Query: 605 cccttgcggttgatgta 621 ||||||||||||||||| Sbjct: 79 cccttgcggttgatgta 63 Score = 121 bits (61), Expect = 3e-24 Identities = 121/141 (85%) Strand = Plus / Minus Query: 243 atcactggctgacgccgagccacttggagaagacgtcgaactcggtgtagtcgctgtcag 302 ||||||| |||| || |||||||||| |||| || ||||| |||||||||||||| | Sbjct: 669 atcactgtgtgacaccaagccacttggtgaagttctcaaactctgtgtagtcgctgtctg 610 Query: 303 aaatcatggtctggtaccacgccttccctgcagccttgatcttagatgcctcctccgcgc 362 | |||||||||| |||||||||||| || |||||||||| |||||| | |||||| | || Sbjct: 609 agatcatggtcttgtaccacgcctttccagcagccttgaccttagaagtctcctctgggc 550 Query: 363 tgagcttggtcctcttggagt 383 ||||||||||||||||||||| Sbjct: 549 tgagcttggtcctcttggagt 529
>ref|XM_507356.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1014_E09.28 mRNA Length = 1487 Score = 250 bits (126), Expect = 5e-63 Identities = 189/210 (90%) Strand = Plus / Minus Query: 412 cgcctcaaaggagccgtacacctcgtccagcttcttgaaggcagactcggtccagatcac 471 |||||| |||| ||| |||||||| || |||||||||||||| ||||||||||||||| Sbjct: 879 cgcctcgaaggtgccatacacctcctcaagcttcttgaaggcgctctcggtccagatcac 820 Query: 472 aaaccggccaaggtggccaccaggggcaaggtcgagcaggttgaggcgctcgacgttggc 531 || || || ||||| ||||| || || |||||||||||||||||||||||||||||||| Sbjct: 819 gaagcgcccgaggtgaccaccgggtgcgaggtcgagcaggttgaggcgctcgacgttggc 760 Query: 532 aacatccacacctgggaggttgcggaaggccttgacgatcttggagccctcggtgccgta 591 |||||||| || |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 759 gacatccacgccggggaggttgcggaaggccttgacgatcttggatccctcggtgccgta 700 Query: 592 gacgatgaggggtcccttgcggttgatgta 621 |||||||||||| ||||||||||||||||| Sbjct: 699 gacgatgagggggcccttgcggttgatgta 670 Score = 113 bits (57), Expect = 7e-22 Identities = 120/141 (85%) Strand = Plus / Minus Query: 257 ccgagccacttggagaagacgtcgaactcggtgtagtcgctgtcagaaatcatggtctgg 316 ||||||||||| |||||| ||||||||| | ||||| ||||| || |||||||||| | Sbjct: 1262 ccgagccacttcgagaagttgtcgaactcagcatagtcactgtctgagatcatggtcttg 1203 Query: 317 taccacgccttccctgcagccttgatcttagatgcctcctccgcgctgagcttggtcctc 376 ||||| ||||| ||||||||||| | ||||| |||||||||| ||| |||||||||||| Sbjct: 1202 taccatgcctttcctgcagccttaaccttagcagcctcctccgggctaagcttggtcctc 1143 Query: 377 ttggagttaatcttgtccttc 397 ||||||| || ||| |||||| Sbjct: 1142 ttggagtcaagcttctccttc 1122
>ref|XM_476865.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1395 Score = 250 bits (126), Expect = 5e-63 Identities = 189/210 (90%) Strand = Plus / Minus Query: 412 cgcctcaaaggagccgtacacctcgtccagcttcttgaaggcagactcggtccagatcac 471 |||||| |||| ||| |||||||| || |||||||||||||| ||||||||||||||| Sbjct: 883 cgcctcgaaggtgccatacacctcctcaagcttcttgaaggcgctctcggtccagatcac 824 Query: 472 aaaccggccaaggtggccaccaggggcaaggtcgagcaggttgaggcgctcgacgttggc 531 || || || ||||| ||||| || || |||||||||||||||||||||||||||||||| Sbjct: 823 gaagcgcccgaggtgaccaccgggtgcgaggtcgagcaggttgaggcgctcgacgttggc 764 Query: 532 aacatccacacctgggaggttgcggaaggccttgacgatcttggagccctcggtgccgta 591 |||||||| || |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 763 gacatccacgccggggaggttgcggaaggccttgacgatcttggatccctcggtgccgta 704 Query: 592 gacgatgaggggtcccttgcggttgatgta 621 |||||||||||| ||||||||||||||||| Sbjct: 703 gacgatgagggggcccttgcggttgatgta 674 Score = 113 bits (57), Expect = 7e-22 Identities = 120/141 (85%) Strand = Plus / Minus Query: 257 ccgagccacttggagaagacgtcgaactcggtgtagtcgctgtcagaaatcatggtctgg 316 ||||||||||| |||||| ||||||||| | ||||| ||||| || |||||||||| | Sbjct: 1266 ccgagccacttcgagaagttgtcgaactcagcatagtcactgtctgagatcatggtcttg 1207 Query: 317 taccacgccttccctgcagccttgatcttagatgcctcctccgcgctgagcttggtcctc 376 ||||| ||||| ||||||||||| | ||||| |||||||||| ||| |||||||||||| Sbjct: 1206 taccatgcctttcctgcagccttaaccttagcagcctcctccgggctaagcttggtcctc 1147 Query: 377 ttggagttaatcttgtccttc 397 ||||||| || ||| |||||| Sbjct: 1146 ttggagtcaagcttctccttc 1126
>ref|XM_507355.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1014_E09.28 mRNA Length = 1641 Score = 250 bits (126), Expect = 5e-63 Identities = 189/210 (90%) Strand = Plus / Minus Query: 412 cgcctcaaaggagccgtacacctcgtccagcttcttgaaggcagactcggtccagatcac 471 |||||| |||| ||| |||||||| || |||||||||||||| ||||||||||||||| Sbjct: 883 cgcctcgaaggtgccatacacctcctcaagcttcttgaaggcgctctcggtccagatcac 824 Query: 472 aaaccggccaaggtggccaccaggggcaaggtcgagcaggttgaggcgctcgacgttggc 531 || || || ||||| ||||| || || |||||||||||||||||||||||||||||||| Sbjct: 823 gaagcgcccgaggtgaccaccgggtgcgaggtcgagcaggttgaggcgctcgacgttggc 764 Query: 532 aacatccacacctgggaggttgcggaaggccttgacgatcttggagccctcggtgccgta 591 |||||||| || |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 763 gacatccacgccggggaggttgcggaaggccttgacgatcttggatccctcggtgccgta 704 Query: 592 gacgatgaggggtcccttgcggttgatgta 621 |||||||||||| ||||||||||||||||| Sbjct: 703 gacgatgagggggcccttgcggttgatgta 674 Score = 113 bits (57), Expect = 7e-22 Identities = 120/141 (85%) Strand = Plus / Minus Query: 257 ccgagccacttggagaagacgtcgaactcggtgtagtcgctgtcagaaatcatggtctgg 316 ||||||||||| |||||| ||||||||| | ||||| ||||| || |||||||||| | Sbjct: 1266 ccgagccacttcgagaagttgtcgaactcagcatagtcactgtctgagatcatggtcttg 1207 Query: 317 taccacgccttccctgcagccttgatcttagatgcctcctccgcgctgagcttggtcctc 376 ||||| ||||| ||||||||||| | ||||| |||||||||| ||| |||||||||||| Sbjct: 1206 taccatgcctttcctgcagccttaaccttagcagcctcctccgggctaagcttggtcctc 1147 Query: 377 ttggagttaatcttgtccttc 397 ||||||| || ||| |||||| Sbjct: 1146 ttggagtcaagcttctccttc 1126
>ref|XM_507354.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1014_E09.28 mRNA Length = 1480 Score = 250 bits (126), Expect = 5e-63 Identities = 189/210 (90%) Strand = Plus / Minus Query: 412 cgcctcaaaggagccgtacacctcgtccagcttcttgaaggcagactcggtccagatcac 471 |||||| |||| ||| |||||||| || |||||||||||||| ||||||||||||||| Sbjct: 884 cgcctcgaaggtgccatacacctcctcaagcttcttgaaggcgctctcggtccagatcac 825 Query: 472 aaaccggccaaggtggccaccaggggcaaggtcgagcaggttgaggcgctcgacgttggc 531 || || || ||||| ||||| || || |||||||||||||||||||||||||||||||| Sbjct: 824 gaagcgcccgaggtgaccaccgggtgcgaggtcgagcaggttgaggcgctcgacgttggc 765 Query: 532 aacatccacacctgggaggttgcggaaggccttgacgatcttggagccctcggtgccgta 591 |||||||| || |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 764 gacatccacgccggggaggttgcggaaggccttgacgatcttggatccctcggtgccgta 705 Query: 592 gacgatgaggggtcccttgcggttgatgta 621 |||||||||||| ||||||||||||||||| Sbjct: 704 gacgatgagggggcccttgcggttgatgta 675 Score = 113 bits (57), Expect = 7e-22 Identities = 120/141 (85%) Strand = Plus / Minus Query: 257 ccgagccacttggagaagacgtcgaactcggtgtagtcgctgtcagaaatcatggtctgg 316 ||||||||||| |||||| ||||||||| | ||||| ||||| || |||||||||| | Sbjct: 1267 ccgagccacttcgagaagttgtcgaactcagcatagtcactgtctgagatcatggtcttg 1208 Query: 317 taccacgccttccctgcagccttgatcttagatgcctcctccgcgctgagcttggtcctc 376 ||||| ||||| ||||||||||| | ||||| |||||||||| ||| |||||||||||| Sbjct: 1207 taccatgcctttcctgcagccttaaccttagcagcctcctccgggctaagcttggtcctc 1148 Query: 377 ttggagttaatcttgtccttc 397 ||||||| || ||| |||||| Sbjct: 1147 ttggagtcaagcttctccttc 1127
>ref|XM_506197.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1014_E09.28 mRNA Length = 1486 Score = 250 bits (126), Expect = 5e-63 Identities = 189/210 (90%) Strand = Plus / Minus Query: 412 cgcctcaaaggagccgtacacctcgtccagcttcttgaaggcagactcggtccagatcac 471 |||||| |||| ||| |||||||| || |||||||||||||| ||||||||||||||| Sbjct: 884 cgcctcgaaggtgccatacacctcctcaagcttcttgaaggcgctctcggtccagatcac 825 Query: 472 aaaccggccaaggtggccaccaggggcaaggtcgagcaggttgaggcgctcgacgttggc 531 || || || ||||| ||||| || || |||||||||||||||||||||||||||||||| Sbjct: 824 gaagcgcccgaggtgaccaccgggtgcgaggtcgagcaggttgaggcgctcgacgttggc 765 Query: 532 aacatccacacctgggaggttgcggaaggccttgacgatcttggagccctcggtgccgta 591 |||||||| || |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 764 gacatccacgccggggaggttgcggaaggccttgacgatcttggatccctcggtgccgta 705 Query: 592 gacgatgaggggtcccttgcggttgatgta 621 |||||||||||| ||||||||||||||||| Sbjct: 704 gacgatgagggggcccttgcggttgatgta 675 Score = 113 bits (57), Expect = 7e-22 Identities = 120/141 (85%) Strand = Plus / Minus Query: 257 ccgagccacttggagaagacgtcgaactcggtgtagtcgctgtcagaaatcatggtctgg 316 ||||||||||| |||||| ||||||||| | ||||| ||||| || |||||||||| | Sbjct: 1267 ccgagccacttcgagaagttgtcgaactcagcatagtcactgtctgagatcatggtcttg 1208 Query: 317 taccacgccttccctgcagccttgatcttagatgcctcctccgcgctgagcttggtcctc 376 ||||| ||||| ||||||||||| | ||||| |||||||||| ||| |||||||||||| Sbjct: 1207 taccatgcctttcctgcagccttaaccttagcagcctcctccgggctaagcttggtcctc 1148 Query: 377 ttggagttaatcttgtccttc 397 ||||||| || ||| |||||| Sbjct: 1147 ttggagtcaagcttctccttc 1127
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 250 bits (126), Expect = 5e-63 Identities = 189/210 (90%) Strand = Plus / Minus Query: 412 cgcctcaaaggagccgtacacctcgtccagcttcttgaaggcagactcggtccagatcac 471 |||||| |||| ||| |||||||| || |||||||||||||| ||||||||||||||| Sbjct: 4296207 cgcctcgaaggtgccatacacctcctcaagcttcttgaaggcgctctcggtccagatcac 4296148 Query: 472 aaaccggccaaggtggccaccaggggcaaggtcgagcaggttgaggcgctcgacgttggc 531 || || || ||||| ||||| || || |||||||||||||||||||||||||||||||| Sbjct: 4296147 gaagcgcccgaggtgaccaccgggtgcgaggtcgagcaggttgaggcgctcgacgttggc 4296088 Query: 532 aacatccacacctgggaggttgcggaaggccttgacgatcttggagccctcggtgccgta 591 |||||||| || |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 4296087 gacatccacgccggggaggttgcggaaggccttgacgatcttggatccctcggtgccgta 4296028 Query: 592 gacgatgaggggtcccttgcggttgatgta 621 |||||||||||| ||||||||||||||||| Sbjct: 4296027 gacgatgagggggcccttgcggttgatgta 4295998 Score = 75.8 bits (38), Expect = 2e-10 Identities = 86/102 (84%) Strand = Plus / Minus Query: 257 ccgagccacttggagaagacgtcgaactcggtgtagtcgctgtcagaaatcatggtctgg 316 ||||||||||| |||||| ||||||||| | ||||| ||||| || |||||||||| | Sbjct: 4297494 ccgagccacttcgagaagttgtcgaactcagcatagtcactgtctgagatcatggtcttg 4297435 Query: 317 taccacgccttccctgcagccttgatcttagatgcctcctcc 358 ||||| ||||| ||||||||||| | ||||| ||||||||| Sbjct: 4297434 taccatgcctttcctgcagccttaaccttagcagcctcctcc 4297393 Score = 42.1 bits (21), Expect = 2.2 Identities = 30/33 (90%) Strand = Plus / Minus Query: 365 agcttggtcctcttggagttaatcttgtccttc 397 ||||||||||||||||||| || ||| |||||| Sbjct: 4296482 agcttggtcctcttggagtcaagcttctccttc 4296450
>dbj|AP003800.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1014_E09 Length = 184624 Score = 250 bits (126), Expect = 5e-63 Identities = 189/210 (90%) Strand = Plus / Minus Query: 412 cgcctcaaaggagccgtacacctcgtccagcttcttgaaggcagactcggtccagatcac 471 |||||| |||| ||| |||||||| || |||||||||||||| ||||||||||||||| Sbjct: 117261 cgcctcgaaggtgccatacacctcctcaagcttcttgaaggcgctctcggtccagatcac 117202 Query: 472 aaaccggccaaggtggccaccaggggcaaggtcgagcaggttgaggcgctcgacgttggc 531 || || || ||||| ||||| || || |||||||||||||||||||||||||||||||| Sbjct: 117201 gaagcgcccgaggtgaccaccgggtgcgaggtcgagcaggttgaggcgctcgacgttggc 117142 Query: 532 aacatccacacctgggaggttgcggaaggccttgacgatcttggagccctcggtgccgta 591 |||||||| || |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 117141 gacatccacgccggggaggttgcggaaggccttgacgatcttggatccctcggtgccgta 117082 Query: 592 gacgatgaggggtcccttgcggttgatgta 621 |||||||||||| ||||||||||||||||| Sbjct: 117081 gacgatgagggggcccttgcggttgatgta 117052 Score = 75.8 bits (38), Expect = 2e-10 Identities = 86/102 (84%) Strand = Plus / Minus Query: 257 ccgagccacttggagaagacgtcgaactcggtgtagtcgctgtcagaaatcatggtctgg 316 ||||||||||| |||||| ||||||||| | ||||| ||||| || |||||||||| | Sbjct: 118548 ccgagccacttcgagaagttgtcgaactcagcatagtcactgtctgagatcatggtcttg 118489 Query: 317 taccacgccttccctgcagccttgatcttagatgcctcctcc 358 ||||| ||||| ||||||||||| | ||||| ||||||||| Sbjct: 118488 taccatgcctttcctgcagccttaaccttagcagcctcctcc 118447 Score = 42.1 bits (21), Expect = 2.2 Identities = 30/33 (90%) Strand = Plus / Minus Query: 365 agcttggtcctcttggagttaatcttgtccttc 397 ||||||||||||||||||| || ||| |||||| Sbjct: 117536 agcttggtcctcttggagtcaagcttctccttc 117504
>dbj|AK104504.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-F06, full insert sequence Length = 1486 Score = 250 bits (126), Expect = 5e-63 Identities = 189/210 (90%) Strand = Plus / Minus Query: 412 cgcctcaaaggagccgtacacctcgtccagcttcttgaaggcagactcggtccagatcac 471 |||||| |||| ||| |||||||| || |||||||||||||| ||||||||||||||| Sbjct: 884 cgcctcgaaggtgccatacacctcctcaagcttcttgaaggcgctctcggtccagatcac 825 Query: 472 aaaccggccaaggtggccaccaggggcaaggtcgagcaggttgaggcgctcgacgttggc 531 || || || ||||| ||||| || || |||||||||||||||||||||||||||||||| Sbjct: 824 gaagcgcccgaggtgaccaccgggtgcgaggtcgagcaggttgaggcgctcgacgttggc 765 Query: 532 aacatccacacctgggaggttgcggaaggccttgacgatcttggagccctcggtgccgta 591 |||||||| || |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 764 gacatccacgccggggaggttgcggaaggccttgacgatcttggatccctcggtgccgta 705 Query: 592 gacgatgaggggtcccttgcggttgatgta 621 |||||||||||| ||||||||||||||||| Sbjct: 704 gacgatgagggggcccttgcggttgatgta 675 Score = 113 bits (57), Expect = 7e-22 Identities = 120/141 (85%) Strand = Plus / Minus Query: 257 ccgagccacttggagaagacgtcgaactcggtgtagtcgctgtcagaaatcatggtctgg 316 ||||||||||| |||||| ||||||||| | ||||| ||||| || |||||||||| | Sbjct: 1267 ccgagccacttcgagaagttgtcgaactcagcatagtcactgtctgagatcatggtcttg 1208 Query: 317 taccacgccttccctgcagccttgatcttagatgcctcctccgcgctgagcttggtcctc 376 ||||| ||||| ||||||||||| | ||||| |||||||||| ||| |||||||||||| Sbjct: 1207 taccatgcctttcctgcagccttaaccttagcagcctcctccgggctaagcttggtcctc 1148 Query: 377 ttggagttaatcttgtccttc 397 ||||||| || ||| |||||| Sbjct: 1147 ttggagtcaagcttctccttc 1127
>dbj|AK104629.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-C02, full insert sequence Length = 1487 Score = 250 bits (126), Expect = 5e-63 Identities = 189/210 (90%) Strand = Plus / Minus Query: 412 cgcctcaaaggagccgtacacctcgtccagcttcttgaaggcagactcggtccagatcac 471 |||||| |||| ||| |||||||| || |||||||||||||| ||||||||||||||| Sbjct: 879 cgcctcgaaggtgccatacacctcctcaagcttcttgaaggcgctctcggtccagatcac 820 Query: 472 aaaccggccaaggtggccaccaggggcaaggtcgagcaggttgaggcgctcgacgttggc 531 || || || ||||| ||||| || || |||||||||||||||||||||||||||||||| Sbjct: 819 gaagcgcccgaggtgaccaccgggtgcgaggtcgagcaggttgaggcgctcgacgttggc 760 Query: 532 aacatccacacctgggaggttgcggaaggccttgacgatcttggagccctcggtgccgta 591 |||||||| || |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 759 gacatccacgccggggaggttgcggaaggccttgacgatcttggatccctcggtgccgta 700 Query: 592 gacgatgaggggtcccttgcggttgatgta 621 |||||||||||| ||||||||||||||||| Sbjct: 699 gacgatgagggggcccttgcggttgatgta 670 Score = 113 bits (57), Expect = 7e-22 Identities = 120/141 (85%) Strand = Plus / Minus Query: 257 ccgagccacttggagaagacgtcgaactcggtgtagtcgctgtcagaaatcatggtctgg 316 ||||||||||| |||||| ||||||||| | ||||| ||||| || |||||||||| | Sbjct: 1262 ccgagccacttcgagaagttgtcgaactcagcatagtcactgtctgagatcatggtcttg 1203 Query: 317 taccacgccttccctgcagccttgatcttagatgcctcctccgcgctgagcttggtcctc 376 ||||| ||||| ||||||||||| | ||||| |||||||||| ||| |||||||||||| Sbjct: 1202 taccatgcctttcctgcagccttaaccttagcagcctcctccgggctaagcttggtcctc 1143 Query: 377 ttggagttaatcttgtccttc 397 ||||||| || ||| |||||| Sbjct: 1142 ttggagtcaagcttctccttc 1122
>dbj|AK104447.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-B12, full insert sequence Length = 1480 Score = 250 bits (126), Expect = 5e-63 Identities = 189/210 (90%) Strand = Plus / Minus Query: 412 cgcctcaaaggagccgtacacctcgtccagcttcttgaaggcagactcggtccagatcac 471 |||||| |||| ||| |||||||| || |||||||||||||| ||||||||||||||| Sbjct: 884 cgcctcgaaggtgccatacacctcctcaagcttcttgaaggcgctctcggtccagatcac 825 Query: 472 aaaccggccaaggtggccaccaggggcaaggtcgagcaggttgaggcgctcgacgttggc 531 || || || ||||| ||||| || || |||||||||||||||||||||||||||||||| Sbjct: 824 gaagcgcccgaggtgaccaccgggtgcgaggtcgagcaggttgaggcgctcgacgttggc 765 Query: 532 aacatccacacctgggaggttgcggaaggccttgacgatcttggagccctcggtgccgta 591 |||||||| || |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 764 gacatccacgccggggaggttgcggaaggccttgacgatcttggatccctcggtgccgta 705 Query: 592 gacgatgaggggtcccttgcggttgatgta 621 |||||||||||| ||||||||||||||||| Sbjct: 704 gacgatgagggggcccttgcggttgatgta 675 Score = 113 bits (57), Expect = 7e-22 Identities = 120/141 (85%) Strand = Plus / Minus Query: 257 ccgagccacttggagaagacgtcgaactcggtgtagtcgctgtcagaaatcatggtctgg 316 ||||||||||| |||||| ||||||||| | ||||| ||||| || |||||||||| | Sbjct: 1267 ccgagccacttcgagaagttgtcgaactcagcatagtcactgtctgagatcatggtcttg 1208 Query: 317 taccacgccttccctgcagccttgatcttagatgcctcctccgcgctgagcttggtcctc 376 ||||| ||||| ||||||||||| | ||||| |||||||||| ||| |||||||||||| Sbjct: 1207 taccatgcctttcctgcagccttaaccttagcagcctcctccgggctaagcttggtcctc 1148 Query: 377 ttggagttaatcttgtccttc 397 ||||||| || ||| |||||| Sbjct: 1147 ttggagtcaagcttctccttc 1127
>dbj|AK060963.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-A09, full insert sequence Length = 1395 Score = 250 bits (126), Expect = 5e-63 Identities = 189/210 (90%) Strand = Plus / Minus Query: 412 cgcctcaaaggagccgtacacctcgtccagcttcttgaaggcagactcggtccagatcac 471 |||||| |||| ||| |||||||| || |||||||||||||| ||||||||||||||| Sbjct: 883 cgcctcgaaggtgccatacacctcctcaagcttcttgaaggcgctctcggtccagatcac 824 Query: 472 aaaccggccaaggtggccaccaggggcaaggtcgagcaggttgaggcgctcgacgttggc 531 || || || ||||| ||||| || || |||||||||||||||||||||||||||||||| Sbjct: 823 gaagcgcccgaggtgaccaccgggtgcgaggtcgagcaggttgaggcgctcgacgttggc 764 Query: 532 aacatccacacctgggaggttgcggaaggccttgacgatcttggagccctcggtgccgta 591 |||||||| || |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 763 gacatccacgccggggaggttgcggaaggccttgacgatcttggatccctcggtgccgta 704 Query: 592 gacgatgaggggtcccttgcggttgatgta 621 |||||||||||| ||||||||||||||||| Sbjct: 703 gacgatgagggggcccttgcggttgatgta 674 Score = 113 bits (57), Expect = 7e-22 Identities = 120/141 (85%) Strand = Plus / Minus Query: 257 ccgagccacttggagaagacgtcgaactcggtgtagtcgctgtcagaaatcatggtctgg 316 ||||||||||| |||||| ||||||||| | ||||| ||||| || |||||||||| | Sbjct: 1266 ccgagccacttcgagaagttgtcgaactcagcatagtcactgtctgagatcatggtcttg 1207 Query: 317 taccacgccttccctgcagccttgatcttagatgcctcctccgcgctgagcttggtcctc 376 ||||| ||||| ||||||||||| | ||||| |||||||||| ||| |||||||||||| Sbjct: 1206 taccatgcctttcctgcagccttaaccttagcagcctcctccgggctaagcttggtcctc 1147 Query: 377 ttggagttaatcttgtccttc 397 ||||||| || ||| |||||| Sbjct: 1146 ttggagtcaagcttctccttc 1126
>dbj|AK060711.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-B02, full insert sequence Length = 1641 Score = 250 bits (126), Expect = 5e-63 Identities = 189/210 (90%) Strand = Plus / Minus Query: 412 cgcctcaaaggagccgtacacctcgtccagcttcttgaaggcagactcggtccagatcac 471 |||||| |||| ||| |||||||| || |||||||||||||| ||||||||||||||| Sbjct: 883 cgcctcgaaggtgccatacacctcctcaagcttcttgaaggcgctctcggtccagatcac 824 Query: 472 aaaccggccaaggtggccaccaggggcaaggtcgagcaggttgaggcgctcgacgttggc 531 || || || ||||| ||||| || || |||||||||||||||||||||||||||||||| Sbjct: 823 gaagcgcccgaggtgaccaccgggtgcgaggtcgagcaggttgaggcgctcgacgttggc 764 Query: 532 aacatccacacctgggaggttgcggaaggccttgacgatcttggagccctcggtgccgta 591 |||||||| || |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 763 gacatccacgccggggaggttgcggaaggccttgacgatcttggatccctcggtgccgta 704 Query: 592 gacgatgaggggtcccttgcggttgatgta 621 |||||||||||| ||||||||||||||||| Sbjct: 703 gacgatgagggggcccttgcggttgatgta 674 Score = 113 bits (57), Expect = 7e-22 Identities = 120/141 (85%) Strand = Plus / Minus Query: 257 ccgagccacttggagaagacgtcgaactcggtgtagtcgctgtcagaaatcatggtctgg 316 ||||||||||| |||||| ||||||||| | ||||| ||||| || |||||||||| | Sbjct: 1266 ccgagccacttcgagaagttgtcgaactcagcatagtcactgtctgagatcatggtcttg 1207 Query: 317 taccacgccttccctgcagccttgatcttagatgcctcctccgcgctgagcttggtcctc 376 ||||| ||||| ||||||||||| | ||||| |||||||||| ||| |||||||||||| Sbjct: 1206 taccatgcctttcctgcagccttaaccttagcagcctcctccgggctaagcttggtcctc 1147 Query: 377 ttggagttaatcttgtccttc 397 ||||||| || ||| |||||| Sbjct: 1146 ttggagtcaagcttctccttc 1126
>gb|BT016670.1| Zea mays clone Contig503 mRNA sequence Length = 1384 Score = 242 bits (122), Expect = 1e-60 Identities = 152/162 (93%) Strand = Plus / Minus Query: 460 ggtccagatcacaaaccggccaaggtggccaccaggggcaaggtcgagcaggttgaggcg 519 ||||||||||||||| || |||||||||||||| ||||||||||| || ||||||||||| Sbjct: 805 ggtccagatcacaaagcgcccaaggtggccaccgggggcaaggtctagtaggttgaggcg 746 Query: 520 ctcgacgttggcaacatccacacctgggaggttgcggaaggccttgacgatcttggagcc 579 |||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||| Sbjct: 745 ctcgacgttggcaacatccacaccgggaaggttgcggaaggccttgacgaccttggagcc 686 Query: 580 ctcggtgccgtagacgatgaggggtcccttgcggttgatgta 621 ||||||||||||||||||||| || ||||||||||||||||| Sbjct: 685 ctcggtgccgtagacgatgagcgggcccttgcggttgatgta 644 Score = 75.8 bits (38), Expect = 2e-10 Identities = 74/86 (86%) Strand = Plus / Minus Query: 254 acgccgagccacttggagaagacgtcgaactcggtgtagtcgctgtcagaaatcatggtc 313 |||||||||||||| |||||| || |||||||||||||||||||| || | ||||||| Sbjct: 1236 acgccgagccactttgagaagttctcaaactcggtgtagtcgctgtccgagaccatggtc 1177 Query: 314 tggtaccacgccttccctgcagcctt 339 | |||||| ||||| || |||||||| Sbjct: 1176 ttgtaccatgccttgccagcagcctt 1151
>gb|BT016602.1| Zea mays clone Contig435 mRNA sequence Length = 1376 Score = 210 bits (106), Expect = 4e-51 Identities = 172/194 (88%) Strand = Plus / Minus Query: 428 tacacctcgtccagcttcttgaaggcagactcggtccagatcacaaaccggccaaggtgg 487 |||||||| || ||||||||||| || |||||||||||||||||| || || |||||| Sbjct: 841 tacacctcctcgagcttcttgaacgcgctctcggtccagatcacaaagcgcccgaggtgg 782 Query: 488 ccaccaggggcaaggtcgagcaggttgaggcgctcgacgttggcaacatccacacctggg 547 ||||| ||||| |||||||||||||||||||||||||||||||| || ||||| || ||| Sbjct: 781 ccaccgggggcgaggtcgagcaggttgaggcgctcgacgttggcgacgtccacgccgggg 722 Query: 548 aggttgcggaaggccttgacgatcttggagccctcggtgccgtagacgatgaggggtccc 607 |||||||||||||||||||||| ||||||||| || ||||||||||||| ||| || ||| Sbjct: 721 aggttgcggaaggccttgacgaccttggagccttctgtgccgtagacgacgagcgggccc 662 Query: 608 ttgcggttgatgta 621 |||||||| ||||| Sbjct: 661 ttgcggttaatgta 648 Score = 97.6 bits (49), Expect = 4e-17 Identities = 106/125 (84%) Strand = Plus / Minus Query: 257 ccgagccacttggagaagacgtcgaactcggtgtagtcgctgtcagaaatcatggtctgg 316 ||||||||||||| |||| || |||||||||||||| ||||| || |||||||||| | Sbjct: 1240 ccgagccacttggtgaagttctcaaactcggtgtagtcactgtccgagatcatggtcttg 1181 Query: 317 taccacgccttccctgcagccttgatcttagatgcctcctccgcgctgagcttggtcctc 376 ||||||||||| || |||||||||| ||| | | |||||||| | | |||||||||||| Sbjct: 1180 taccacgccttgccggcagccttgaccttggcagtctcctccgaggtaagcttggtcctc 1121 Query: 377 ttgga 381 ||||| Sbjct: 1120 ttgga 1116
>ref|NM_111797.2| Arabidopsis thaliana structural constituent of ribosome AT3G09630 transcript variant AT3G09630.1 mRNA, complete cds Length = 1560 Score = 75.8 bits (38), Expect = 2e-10 Identities = 56/62 (90%) Strand = Plus / Minus Query: 440 agcttcttgaaggcagactcggtccagatcacaaaccggccaaggtggccaccaggggca 499 ||||||| |||||||||| |||||||||||||||||| |||||||| |||||||| ||| Sbjct: 867 agcttctcaaaggcagacttggtccagatcacaaaccgaccaaggtgaccaccaggagca 808 Query: 500 ag 501 || Sbjct: 807 ag 806 Score = 44.1 bits (22), Expect = 0.54 Identities = 52/62 (83%) Strand = Plus / Minus Query: 281 aactcggtgtagtcgctgtcagaaatcatggtctggtaccacgccttccctgcagccttg 340 ||||||||||| || ||||| || ||||| |||| |||||||| ||| ||||| || ||| Sbjct: 1254 aactcggtgtaatcactgtcggagatcatagtcttgtaccacgacttgcctgctgctttg 1195 Query: 341 at 342 || Sbjct: 1194 at 1193
>ref|NM_001035586.1| Arabidopsis thaliana structural constituent of ribosome AT3G09630 transcript variant AT3G09630.2 mRNA, complete cds Length = 1598 Score = 75.8 bits (38), Expect = 2e-10 Identities = 56/62 (90%) Strand = Plus / Minus Query: 440 agcttcttgaaggcagactcggtccagatcacaaaccggccaaggtggccaccaggggca 499 ||||||| |||||||||| |||||||||||||||||| |||||||| |||||||| ||| Sbjct: 873 agcttctcaaaggcagacttggtccagatcacaaaccgaccaaggtgaccaccaggagca 814 Query: 500 ag 501 || Sbjct: 813 ag 812 Score = 44.1 bits (22), Expect = 0.54 Identities = 52/62 (83%) Strand = Plus / Minus Query: 281 aactcggtgtagtcgctgtcagaaatcatggtctggtaccacgccttccctgcagccttg 340 ||||||||||| || ||||| || ||||| |||| |||||||| ||| ||||| || ||| Sbjct: 1257 aactcggtgtaatcactgtcggagatcatagtcttgtaccacgacttgcctgctgctttg 1198 Query: 341 at 342 || Sbjct: 1197 at 1196
>gb|BT008495.1| Arabidopsis thaliana At3g09630 gene, complete cds Length = 1221 Score = 75.8 bits (38), Expect = 2e-10 Identities = 56/62 (90%) Strand = Plus / Minus Query: 440 agcttcttgaaggcagactcggtccagatcacaaaccggccaaggtggccaccaggggca 499 ||||||| |||||||||| |||||||||||||||||| |||||||| |||||||| ||| Sbjct: 797 agcttctcaaaggcagacttggtccagatcacaaaccgaccaaggtgaccaccaggagca 738 Query: 500 ag 501 || Sbjct: 737 ag 736 Score = 44.1 bits (22), Expect = 0.54 Identities = 52/62 (83%) Strand = Plus / Minus Query: 281 aactcggtgtagtcgctgtcagaaatcatggtctggtaccacgccttccctgcagccttg 340 ||||||||||| || ||||| || ||||| |||| |||||||| ||| ||||| || ||| Sbjct: 1184 aactcggtgtaatcactgtcggagatcatagtcttgtaccacgacttgcctgctgctttg 1125 Query: 341 at 342 || Sbjct: 1124 at 1123
>gb|AY056781.1| Arabidopsis thaliana AT3g09630/F11F8_22 mRNA, complete cds Length = 1416 Score = 75.8 bits (38), Expect = 2e-10 Identities = 56/62 (90%) Strand = Plus / Minus Query: 440 agcttcttgaaggcagactcggtccagatcacaaaccggccaaggtggccaccaggggca 499 ||||||| |||||||||| |||||||||||||||||| |||||||| |||||||| ||| Sbjct: 864 agcttctcaaaggcagacttggtccagatcacaaaccgaccaaggtgaccaccaggagca 805 Query: 500 ag 501 || Sbjct: 804 ag 803 Score = 44.1 bits (22), Expect = 0.54 Identities = 52/62 (83%) Strand = Plus / Minus Query: 281 aactcggtgtagtcgctgtcagaaatcatggtctggtaccacgccttccctgcagccttg 340 ||||||||||| || ||||| || ||||| |||| |||||||| ||| ||||| || ||| Sbjct: 1251 aactcggtgtaatcactgtcggagatcatagtcttgtaccacgacttgcctgctgctttg 1192 Query: 341 at 342 || Sbjct: 1191 at 1190
>gb|AC016661.7|AC016661 Arabidopsis thaliana chromosome 3 BAC F11F8 genomic sequence, complete sequence Length = 107603 Score = 75.8 bits (38), Expect = 2e-10 Identities = 56/62 (90%) Strand = Plus / Minus Query: 440 agcttcttgaaggcagactcggtccagatcacaaaccggccaaggtggccaccaggggca 499 ||||||| |||||||||| |||||||||||||||||| |||||||| |||||||| ||| Sbjct: 52982 agcttctcaaaggcagacttggtccagatcacaaaccgaccaaggtgaccaccaggagca 52923 Query: 500 ag 501 || Sbjct: 52922 ag 52921 Score = 44.1 bits (22), Expect = 0.54 Identities = 52/62 (83%) Strand = Plus / Minus Query: 281 aactcggtgtagtcgctgtcagaaatcatggtctggtaccacgccttccctgcagccttg 340 ||||||||||| || ||||| || ||||| |||| |||||||| ||| ||||| || ||| Sbjct: 53780 aactcggtgtaatcactgtcggagatcatagtcttgtaccacgacttgcctgctgctttg 53721 Query: 341 at 342 || Sbjct: 53720 at 53719
>gb|AY087963.1| Arabidopsis thaliana clone 39947 mRNA, complete sequence Length = 1406 Score = 75.8 bits (38), Expect = 2e-10 Identities = 56/62 (90%) Strand = Plus / Minus Query: 440 agcttcttgaaggcagactcggtccagatcacaaaccggccaaggtggccaccaggggca 499 ||||||| |||||||||| |||||||||||||||||| |||||||| |||||||| ||| Sbjct: 867 agcttctcaaaggcagacttggtccagatcacaaaccgaccaaggtgaccaccaggagca 808 Query: 500 ag 501 || Sbjct: 807 ag 806 Score = 44.1 bits (22), Expect = 0.54 Identities = 52/62 (83%) Strand = Plus / Minus Query: 281 aactcggtgtagtcgctgtcagaaatcatggtctggtaccacgccttccctgcagccttg 340 ||||||||||| || ||||| || ||||| |||| |||||||| ||| ||||| || ||| Sbjct: 1254 aactcggtgtaatcactgtcggagatcatagtcttgtaccacgacttgcctgctgctttg 1195 Query: 341 at 342 || Sbjct: 1194 at 1193
>gb|BT002438.1| Arabidopsis thaliana putative 60S ribosomal protein L1 (At3g09630) mRNA, complete cds Length = 1437 Score = 75.8 bits (38), Expect = 2e-10 Identities = 56/62 (90%) Strand = Plus / Minus Query: 440 agcttcttgaaggcagactcggtccagatcacaaaccggccaaggtggccaccaggggca 499 ||||||| |||||||||| |||||||||||||||||| |||||||| |||||||| ||| Sbjct: 865 agcttctcaaaggcagacttggtccagatcacaaaccgaccaaggtgaccaccaggagca 806 Query: 500 ag 501 || Sbjct: 805 ag 804 Score = 44.1 bits (22), Expect = 0.54 Identities = 52/62 (83%) Strand = Plus / Minus Query: 281 aactcggtgtagtcgctgtcagaaatcatggtctggtaccacgccttccctgcagccttg 340 ||||||||||| || ||||| || ||||| |||| |||||||| ||| ||||| || ||| Sbjct: 1252 aactcggtgtaatcactgtcggagatcatagtcttgtaccacgacttgcctgctgctttg 1193 Query: 341 at 342 || Sbjct: 1192 at 1191
>ref|NM_120365.2| Arabidopsis thaliana structural constituent of ribosome AT5G02870 mRNA, complete cds Length = 1460 Score = 73.8 bits (37), Expect = 6e-10 Identities = 76/89 (85%) Strand = Plus / Minus Query: 255 cgccgagccacttggagaagacgtcgaactcggtgtagtcgctgtcagaaatcatggtct 314 |||| |||||||||| |||| ||||||||||||||||| ||||| |||||||| |||| Sbjct: 1257 cgccaagccacttggtgaagttatcgaactcggtgtagtcactgtctgaaatcatagtct 1198 Query: 315 ggtaccacgccttccctgcagccttgatc 343 | ||||| ||||| ||||| || |||||| Sbjct: 1197 gataccaagccttgcctgctgctttgatc 1169 Score = 46.1 bits (23), Expect = 0.14 Identities = 41/47 (87%) Strand = Plus / Minus Query: 452 gcagactcggtccagatcacaaaccggccaaggtggccaccaggggc 498 ||||||| ||||| |||||||||| |||||||| ||||||||||| Sbjct: 832 gcagacttagtccaaatcacaaacctaccaaggtgaccaccaggggc 786
>emb|AL162973.1|ATF9G14 Arabidopsis thaliana DNA chromosome 5, BAC clone F9G14 (ESSA project) Length = 104769 Score = 73.8 bits (37), Expect = 6e-10 Identities = 76/89 (85%) Strand = Plus / Minus Query: 255 cgccgagccacttggagaagacgtcgaactcggtgtagtcgctgtcagaaatcatggtct 314 |||| |||||||||| |||| ||||||||||||||||| ||||| |||||||| |||| Sbjct: 54991 cgccaagccacttggtgaagttatcgaactcggtgtagtcactgtctgaaatcatagtct 54932 Query: 315 ggtaccacgccttccctgcagccttgatc 343 | ||||| ||||| ||||| || |||||| Sbjct: 54931 gataccaagccttgcctgctgctttgatc 54903 Score = 46.1 bits (23), Expect = 0.14 Identities = 41/47 (87%) Strand = Plus / Minus Query: 452 gcagactcggtccagatcacaaaccggccaaggtggccaccaggggc 498 ||||||| ||||| |||||||||| |||||||| ||||||||||| Sbjct: 54093 gcagacttagtccaaatcacaaacctaccaaggtgaccaccaggggc 54047
>gb|AY136320.1| Arabidopsis thaliana 60S ribosomal protein-like (At5g02870) mRNA, complete cds Length = 1391 Score = 73.8 bits (37), Expect = 6e-10 Identities = 76/89 (85%) Strand = Plus / Minus Query: 255 cgccgagccacttggagaagacgtcgaactcggtgtagtcgctgtcagaaatcatggtct 314 |||| |||||||||| |||| ||||||||||||||||| ||||| |||||||| |||| Sbjct: 1235 cgccaagccacttggtgaagttatcgaactcggtgtagtcactgtctgaaatcatagtct 1176 Query: 315 ggtaccacgccttccctgcagccttgatc 343 | ||||| ||||| ||||| || |||||| Sbjct: 1175 gataccaagccttgcctgctgctttgatc 1147 Score = 46.1 bits (23), Expect = 0.14 Identities = 41/47 (87%) Strand = Plus / Minus Query: 452 gcagactcggtccagatcacaaaccggccaaggtggccaccaggggc 498 ||||||| ||||| |||||||||| |||||||| ||||||||||| Sbjct: 810 gcagacttagtccaaatcacaaacctaccaaggtgaccaccaggggc 764
>gb|AY133608.1| Arabidopsis thaliana AT5g02870/F9G14_180 mRNA, complete cds Length = 924 Score = 73.8 bits (37), Expect = 6e-10 Identities = 76/89 (85%) Strand = Plus / Minus Query: 255 cgccgagccacttggagaagacgtcgaactcggtgtagtcgctgtcagaaatcatggtct 314 |||| |||||||||| |||| ||||||||||||||||| ||||| |||||||| |||| Sbjct: 913 cgccaagccacttggtgaagttatcgaactcggtgtagtcactgtctgaaatcatagtct 854 Query: 315 ggtaccacgccttccctgcagccttgatc 343 | ||||| ||||| ||||| || |||||| Sbjct: 853 gataccaagccttgcctgctgctttgatc 825 Score = 46.1 bits (23), Expect = 0.14 Identities = 41/47 (87%) Strand = Plus / Minus Query: 452 gcagactcggtccagatcacaaaccggccaaggtggccaccaggggc 498 ||||||| ||||| |||||||||| |||||||| ||||||||||| Sbjct: 488 gcagacttagtccaaatcacaaacctaccaaggtgaccaccaggggc 442
>gb|AY114639.1| Arabidopsis thaliana 60S ribosomal protein-like protein (At5g02870) mRNA, complete cds Length = 1278 Score = 73.8 bits (37), Expect = 6e-10 Identities = 76/89 (85%) Strand = Plus / Minus Query: 255 cgccgagccacttggagaagacgtcgaactcggtgtagtcgctgtcagaaatcatggtct 314 |||| |||||||||| |||| ||||||||||||||||| ||||| |||||||| |||| Sbjct: 1213 cgccaagccacttggtgaagttatcgaactcggtgtagtcactgtctgaaatcatagtct 1154 Query: 315 ggtaccacgccttccctgcagccttgatc 343 | ||||| ||||| ||||| || |||||| Sbjct: 1153 gataccaagccttgcctgctgctttgatc 1125 Score = 46.1 bits (23), Expect = 0.14 Identities = 41/47 (87%) Strand = Plus / Minus Query: 452 gcagactcggtccagatcacaaaccggccaaggtggccaccaggggc 498 ||||||| ||||| |||||||||| |||||||| ||||||||||| Sbjct: 788 gcagacttagtccaaatcacaaacctaccaaggtgaccaccaggggc 742
>gb|AY093384.1| Arabidopsis thaliana 60S ribosomal protein-like (At5g02870) mRNA, complete cds Length = 1278 Score = 73.8 bits (37), Expect = 6e-10 Identities = 76/89 (85%) Strand = Plus / Minus Query: 255 cgccgagccacttggagaagacgtcgaactcggtgtagtcgctgtcagaaatcatggtct 314 |||| |||||||||| |||| ||||||||||||||||| ||||| |||||||| |||| Sbjct: 1213 cgccaagccacttggtgaagttatcgaactcggtgtagtcactgtctgaaatcatagtct 1154 Query: 315 ggtaccacgccttccctgcagccttgatc 343 | ||||| ||||| ||||| || |||||| Sbjct: 1153 gataccaagccttgcctgctgctttgatc 1125 Score = 46.1 bits (23), Expect = 0.14 Identities = 41/47 (87%) Strand = Plus / Minus Query: 452 gcagactcggtccagatcacaaaccggccaaggtggccaccaggggc 498 ||||||| ||||| |||||||||| |||||||| ||||||||||| Sbjct: 788 gcagacttagtccaaatcacaaacctaccaaggtgaccaccaggggc 742
>gb|AF367314.1| Arabidopsis thaliana AT5g02870/F9G14_180 mRNA, complete cds Length = 1417 Score = 73.8 bits (37), Expect = 6e-10 Identities = 76/89 (85%) Strand = Plus / Minus Query: 255 cgccgagccacttggagaagacgtcgaactcggtgtagtcgctgtcagaaatcatggtct 314 |||| |||||||||| |||| ||||||||||||||||| ||||| |||||||| |||| Sbjct: 1229 cgccaagccacttggtgaagttatcgaactcggtgtagtcactgtctgaaatcatagtct 1170 Query: 315 ggtaccacgccttccctgcagccttgatc 343 | ||||| ||||| ||||| || |||||| Sbjct: 1169 gataccaagccttgcctgctgctttgatc 1141 Score = 46.1 bits (23), Expect = 0.14 Identities = 41/47 (87%) Strand = Plus / Minus Query: 452 gcagactcggtccagatcacaaaccggccaaggtggccaccaggggc 498 ||||||| ||||| |||||||||| |||||||| ||||||||||| Sbjct: 804 gcagacttagtccaaatcacaaacctaccaaggtgaccaccaggggc 758
>gb|AY062452.1| Arabidopsis thaliana 60S ribosomal protein-like (At5g02870; F9G14_180) mRNA, complete cds Length = 1376 Score = 73.8 bits (37), Expect = 6e-10 Identities = 76/89 (85%) Strand = Plus / Minus Query: 255 cgccgagccacttggagaagacgtcgaactcggtgtagtcgctgtcagaaatcatggtct 314 |||| |||||||||| |||| ||||||||||||||||| ||||| |||||||| |||| Sbjct: 1234 cgccaagccacttggtgaagttatcgaactcggtgtagtcactgtctgaaatcatagtct 1175 Query: 315 ggtaccacgccttccctgcagccttgatc 343 | ||||| ||||| ||||| || |||||| Sbjct: 1174 gataccaagccttgcctgctgctttgatc 1146 Score = 46.1 bits (23), Expect = 0.14 Identities = 41/47 (87%) Strand = Plus / Minus Query: 452 gcagactcggtccagatcacaaaccggccaaggtggccaccaggggc 498 ||||||| ||||| |||||||||| |||||||| ||||||||||| Sbjct: 809 gcagacttagtccaaatcacaaacctaccaaggtgaccaccaggggc 763
>gb|AY059886.1| Arabidopsis thaliana 60S ribosomal protein-like (At5g02870; F9G14_180) mRNA, complete cds Length = 1424 Score = 73.8 bits (37), Expect = 6e-10 Identities = 76/89 (85%) Strand = Plus / Minus Query: 255 cgccgagccacttggagaagacgtcgaactcggtgtagtcgctgtcagaaatcatggtct 314 |||| |||||||||| |||| ||||||||||||||||| ||||| |||||||| |||| Sbjct: 1257 cgccaagccacttggtgaagttatcgaactcggtgtagtcactgtctgaaatcatagtct 1198 Query: 315 ggtaccacgccttccctgcagccttgatc 343 | ||||| ||||| ||||| || |||||| Sbjct: 1197 gataccaagccttgcctgctgctttgatc 1169 Score = 46.1 bits (23), Expect = 0.14 Identities = 41/47 (87%) Strand = Plus / Minus Query: 452 gcagactcggtccagatcacaaaccggccaaggtggccaccaggggc 498 ||||||| ||||| |||||||||| |||||||| ||||||||||| Sbjct: 832 gcagacttagtccaaatcacaaacctaccaaggtgaccaccaggggc 786
>gb|AY054479.1| Arabidopsis thaliana 60S ribosomal protein-like (At5g02870; F9G14_180) mRNA, complete cds Length = 1436 Score = 73.8 bits (37), Expect = 6e-10 Identities = 76/89 (85%) Strand = Plus / Minus Query: 255 cgccgagccacttggagaagacgtcgaactcggtgtagtcgctgtcagaaatcatggtct 314 |||| |||||||||| |||| ||||||||||||||||| ||||| |||||||| |||| Sbjct: 1234 cgccaagccacttggtgaagttatcgaactcggtgtagtcactgtctgaaatcatagtct 1175 Query: 315 ggtaccacgccttccctgcagccttgatc 343 | ||||| ||||| ||||| || |||||| Sbjct: 1174 gataccaagccttgcctgctgctttgatc 1146 Score = 46.1 bits (23), Expect = 0.14 Identities = 41/47 (87%) Strand = Plus / Minus Query: 452 gcagactcggtccagatcacaaaccggccaaggtggccaccaggggc 498 ||||||| ||||| |||||||||| |||||||| ||||||||||| Sbjct: 809 gcagacttagtccaaatcacaaacctaccaaggtgaccaccaggggc 763
>dbj|AK117624.1| Arabidopsis thaliana At5g02870 mRNA for putative 60S ribosomal protein, complete cds, clone: RAFL17-28-D01 Length = 2686 Score = 73.8 bits (37), Expect = 6e-10 Identities = 76/89 (85%) Strand = Plus / Minus Query: 255 cgccgagccacttggagaagacgtcgaactcggtgtagtcgctgtcagaaatcatggtct 314 |||| |||||||||| |||| ||||||||||||||||| ||||| |||||||| |||| Sbjct: 1254 cgccaagccacttggtgaagttatcgaactcggtgtagtcactgtctgaaatcatagtct 1195 Query: 315 ggtaccacgccttccctgcagccttgatc 343 | ||||| ||||| ||||| || |||||| Sbjct: 1194 gataccaagccttgcctgctgctttgatc 1166 Score = 46.1 bits (23), Expect = 0.14 Identities = 41/47 (87%) Strand = Plus / Minus Query: 452 gcagactcggtccagatcacaaaccggccaaggtggccaccaggggc 498 ||||||| ||||| |||||||||| |||||||| ||||||||||| Sbjct: 829 gcagacttagtccaaatcacaaacctaccaaggtgaccaccaggggc 783
>gb|BT002088.1| Arabidopsis thaliana 60S ribosomal protein-like (At5g02870) mRNA, complete cds Length = 1278 Score = 73.8 bits (37), Expect = 6e-10 Identities = 76/89 (85%) Strand = Plus / Minus Query: 255 cgccgagccacttggagaagacgtcgaactcggtgtagtcgctgtcagaaatcatggtct 314 |||| |||||||||| |||| ||||||||||||||||| ||||| |||||||| |||| Sbjct: 1213 cgccaagccacttggtgaagttatcgaactcggtgtagtcactgtctgaaatcatagtct 1154 Query: 315 ggtaccacgccttccctgcagccttgatc 343 | ||||| ||||| ||||| || |||||| Sbjct: 1153 gataccaagccttgcctgctgctttgatc 1125 Score = 46.1 bits (23), Expect = 0.14 Identities = 41/47 (87%) Strand = Plus / Minus Query: 452 gcagactcggtccagatcacaaaccggccaaggtggccaccaggggc 498 ||||||| ||||| |||||||||| |||||||| ||||||||||| Sbjct: 788 gcagacttagtccaaatcacaaacctaccaaggtgaccaccaggggc 742
>gb|BT017333.1| Zea mays clone EL01N0321A08.c mRNA sequence Length = 710 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 254 acgccgagccacttggagaagacgtcgaactcggtgtagtcgctgtcagaaatcatggtc 313 |||||||||||||| |||||| || |||||||||||||||||||| || | ||||||| Sbjct: 569 acgccgagccactttgagaagttctcaaactcggtgtagtcgctgtccgagaccatggtc 510 Query: 314 tggtaccacgcctt 327 | |||||| ||||| Sbjct: 509 ttgtaccatgcctt 496
>gb|S81259.1|S81259S1 CCAAT-binding factor B subunit=HAP2 subunit homolog, CBF-B=CCAAT-binding factor B subunit [Brassica napus, cv. Westar, Genomic, 423 nt, segment 1 of 2] Length = 423 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/64 (89%), Gaps = 2/64 (3%) Strand = Plus / Minus Query: 281 aactcggtgtagtcgctgtcagaaat--catggtctggtaccacgccttccctgcagcct 338 |||||||||||||| |||||||| || ||| ||||| ||||||||||||||||| |||| Sbjct: 377 aactcggtgtagtcactgtcagagatatcatagtctgctaccacgccttccctgctgcct 318 Query: 339 tgat 342 |||| Sbjct: 317 tgat 314
>gb|AC079605.13|AC079605 Arabidopsis thaliana chromosome 1 BAC T32G9 genomic sequence, complete sequence Length = 104807 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Minus Query: 257 ccgagccacttggagaagacgtcgaactcggtgtagtcgctgtcagaaatcatggtctgg 316 ||||||||||| |||||| ||| ||||||| |||||| ||||| || |||||||||| | Sbjct: 17972 ccgagccacttagagaagttgtcaaactcggggtagtcactgtccgagatcatggtcttg 17913 Query: 317 taccacgccttccctgc 333 ||||| | ||||||||| Sbjct: 17912 taccatgacttccctgc 17896
>gb|U33884.1|BNU33884 Brassica napus clone bncbf-b1 CCAAT-binding factor B subunit homolog mRNA, complete cds Length = 1220 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/64 (89%), Gaps = 2/64 (3%) Strand = Plus / Minus Query: 281 aactcggtgtagtcgctgtcagaaat--catggtctggtaccacgccttccctgcagcct 338 |||||||||||||| |||||||| || ||| ||||| ||||||||||||||||| |||| Sbjct: 92 aactcggtgtagtcactgtcagagatatcatagtctgctaccacgccttccctgctgcct 33 Query: 339 tgat 342 |||| Sbjct: 32 tgat 29
>ref|XM_753952.1| Ustilago maydis 521 hypothetical protein (UM02898.1) partial mRNA Length = 1002 Score = 60.0 bits (30), Expect = 9e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 465 agatcacaaaccggccaaggtggccaccaggggcaaggtcgagcaggttgaggcgctc 522 |||| ||||| ||||||||||| ||||||||||| || | ||||||||| |||||||| Sbjct: 661 agatgacaaagcggccaaggtgtccaccaggggcgagctggagcaggttcaggcgctc 604
>ref|NM_059015.2| Caenorhabditis elegans Ribosomal Protein, Large subunit family member (rpl-4) (rpl-4) mRNA, complete cds Length = 1083 Score = 58.0 bits (29), Expect = 4e-05 Identities = 29/29 (100%) Strand = Plus / Minus Query: 440 agcttcttgaaggcagactcggtccagat 468 ||||||||||||||||||||||||||||| Sbjct: 784 agcttcttgaaggcagactcggtccagat 756
>gb|AF000196.1| Caenorhabditis elegans cosmid B0041, complete sequence Length = 28609 Score = 58.0 bits (29), Expect = 4e-05 Identities = 29/29 (100%) Strand = Plus / Plus Query: 440 agcttcttgaaggcagactcggtccagat 468 ||||||||||||||||||||||||||||| Sbjct: 2862 agcttcttgaaggcagactcggtccagat 2890
>gb|AE017350.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 10, complete sequence Length = 1085720 Score = 56.0 bits (28), Expect = 1e-04 Identities = 64/76 (84%) Strand = Plus / Plus Query: 451 ggcagactcggtccagatcacaaaccggccaaggtggccaccaggggcaaggtcgagcag 510 |||||||||||||||||| | || || |||| ||||||||||||||| || | ||| || Sbjct: 561470 ggcagactcggtccagatgatgaatcgaccaacgtggccaccaggggcgagctggaggag 561529 Query: 511 gttgaggcgctcgacg 526 ||||||| ||||||| Sbjct: 561530 gttgagggactcgacg 561545
>ref|XM_567364.1| Cryptococcus neoformans var. neoformans JEC21 Ras2 (CNJ01920) partial mRNA Length = 1164 Score = 56.0 bits (28), Expect = 1e-04 Identities = 64/76 (84%) Strand = Plus / Minus Query: 451 ggcagactcggtccagatcacaaaccggccaaggtggccaccaggggcaaggtcgagcag 510 |||||||||||||||||| | || || |||| ||||||||||||||| || | ||| || Sbjct: 785 ggcagactcggtccagatgatgaatcgaccaacgtggccaccaggggcgagctggaggag 726 Query: 511 gttgaggcgctcgacg 526 ||||||| ||||||| Sbjct: 725 gttgagggactcgacg 710
>gb|CP000080.1| Leishmania major strain Friedlin chromosome 29, complete sequence Length = 1212674 Score = 52.0 bits (26), Expect = 0.002 Identities = 65/78 (83%) Strand = Plus / Minus Query: 436 gtccagcttcttgaaggcagactcggtccagatcacaaaccggccaaggtggccaccagg 495 |||||||| || ||| ||||||| ||||||||||| || ||||||| ||||||||| || Sbjct: 426001 gtccagctgctcgaacgcagactgcgtccagatcacgaagcggccaacgtggccaccggg 425942 Query: 496 ggcaaggtcgagcaggtt 513 || |||| |||||||| Sbjct: 425941 cgccaggtgcagcaggtt 425924 Score = 52.0 bits (26), Expect = 0.002 Identities = 65/78 (83%) Strand = Plus / Minus Query: 436 gtccagcttcttgaaggcagactcggtccagatcacaaaccggccaaggtggccaccagg 495 |||||||| || ||| ||||||| ||||||||||| || ||||||| ||||||||| || Sbjct: 421236 gtccagctgctcgaacgcagactgcgtccagatcacgaagcggccaacgtggccaccggg 421177 Query: 496 ggcaaggtcgagcaggtt 513 || |||| |||||||| Sbjct: 421176 cgccaggtgcagcaggtt 421159 Score = 44.1 bits (22), Expect = 0.54 Identities = 46/54 (85%) Strand = Plus / Minus Query: 436 gtccagcttcttgaaggcagactcggtccagatcacaaaccggccaaggtggcc 489 |||||||| || ||| ||||||| ||||||||||| || ||||||| |||||| Sbjct: 423619 gtccagctgctcgaacgcagactgcgtccagatcacgaagcggccaacgtggcc 423566
>ref|XM_842678.1| Leishmania major strain Friedlin hypothetical protein (LMJ_0748) partial mRNA Length = 1605 Score = 52.0 bits (26), Expect = 0.002 Identities = 65/78 (83%) Strand = Plus / Minus Query: 436 gtccagcttcttgaaggcagactcggtccagatcacaaaccggccaaggtggccaccagg 495 |||||||| || ||| ||||||| ||||||||||| || ||||||| ||||||||| || Sbjct: 934 gtccagctgctcgaacgcagactgcgtccagatcacgaagcggccaacgtggccaccggg 875 Query: 496 ggcaaggtcgagcaggtt 513 || |||| |||||||| Sbjct: 874 cgccaggtgcagcaggtt 857
>ref|XM_842680.1| Leishmania major strain Friedlin ribosomal protein L1a (LMJ_0750) partial mRNA Length = 1122 Score = 52.0 bits (26), Expect = 0.002 Identities = 65/78 (83%) Strand = Plus / Minus Query: 436 gtccagcttcttgaaggcagactcggtccagatcacaaaccggccaaggtggccaccagg 495 |||||||| || ||| ||||||| ||||||||||| || ||||||| ||||||||| || Sbjct: 777 gtccagctgctcgaacgcagactgcgtccagatcacgaagcggccaacgtggccaccggg 718 Query: 496 ggcaaggtcgagcaggtt 513 || |||| |||||||| Sbjct: 717 cgccaggtgcagcaggtt 700
>ref|XM_362607.1| Magnaporthe grisea 70-15 hypothetical protein (MG08190.4) partial mRNA Length = 1116 Score = 46.1 bits (23), Expect = 0.14 Identities = 35/39 (89%) Strand = Plus / Minus Query: 479 ccaaggtggccaccaggggcaaggtcgagcaggttgagg 517 |||||||||||||||||||| || | ||| ||||||||| Sbjct: 755 ccaaggtggccaccaggggcgagctggaggaggttgagg 717
>ref|XM_842679.1| Leishmania major strain Friedlin ribosomal protein L1a (LMJ_0749) partial mRNA Length = 1299 Score = 44.1 bits (22), Expect = 0.54 Identities = 46/54 (85%) Strand = Plus / Minus Query: 436 gtccagcttcttgaaggcagactcggtccagatcacaaaccggccaaggtggcc 489 |||||||| || ||| ||||||| ||||||||||| || ||||||| |||||| Sbjct: 778 gtccagctgctcgaacgcagactgcgtccagatcacgaagcggccaacgtggcc 725
>emb|Z84466.2|HS230G1 Human DNA sequence from clone RP1-230G1 on chromosome Xp11.3 Contains 5'UTR of the ZNF41 gene for zinc finger protein 41, a novel gene (LOC203414), a chromosome 6 open reading frame 68 pseudogene (LOC286402), the ARAF1 gene for v-raf murine sarcoma 3611 viral oncogene homolog 1, the 3' end of the SYN1 gene for synapsin I, the TIMP1 gene for tissue inhibitor of metalloproteinase 1 (erythroid potentiating activity, collagenase inhibitor) and five CpG islands, complete sequence Length = 125517 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 77 aaaaaggcatccacagataaaa 98 |||||||||||||||||||||| Sbjct: 10091 aaaaaggcatccacagataaaa 10112
>ref|XM_389185.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG09009.1) partial mRNA Length = 588 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 428 tacacctcgtccagcttcttg 448 ||||||||||||||||||||| Sbjct: 92 tacacctcgtccagcttcttg 72
>ref|XM_501532.1| Yarrowia lipolytica CLIB122, YALI0C06820g predicted mRNA Length = 1092 Score = 42.1 bits (21), Expect = 2.2 Identities = 36/41 (87%) Strand = Plus / Minus Query: 446 ttgaaggcagactcggtccagatcacaaaccggccaaggtg 486 ||||||||| |||||||||||| || || ||||||||||| Sbjct: 770 ttgaaggcaccctcggtccagatgacgaatcggccaaggtg 730
>ref|XM_966541.1| PREDICTED: Tribolium castaneum similar to CG5502-PA (LOC660298), mRNA Length = 1369 Score = 42.1 bits (21), Expect = 2.2 Identities = 39/45 (86%) Strand = Plus / Minus Query: 448 gaaggcagactcggtccagatcacaaaccggccaaggtggccacc 492 |||||| |||||||||||||| || || ||||||| ||| ||||| Sbjct: 843 gaaggccgactcggtccagatgacgaaacggccaacgtgaccacc 799
>gb|AC129510.15| Homo sapiens chromosome 17, clone RP11-1376P16, complete sequence Length = 83521 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 318 accacgccttccctgcagcct 338 ||||||||||||||||||||| Sbjct: 26001 accacgccttccctgcagcct 26021
>emb|BX842704.15| Zebrafish DNA sequence from clone DKEY-177D20 in linkage group 20 Contains four CpG islands, complete sequence Length = 154958 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 154 gacacaatgacaaaatcatac 174 ||||||||||||||||||||| Sbjct: 37291 gacacaatgacaaaatcatac 37271
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 553 gcggaaggccttgacgatctt 573 ||||||||||||||||||||| Sbjct: 970470 gcggaaggccttgacgatctt 970450
>gb|AC062020.5| Homo sapiens BAC clone RP11-154O23 from 2, complete sequence Length = 170197 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 403 ggaggaagacgcctcaaagga 423 ||||||||||||||||||||| Sbjct: 20720 ggaggaagacgcctcaaagga 20700
>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica Length = 3272609 Score = 42.1 bits (21), Expect = 2.2 Identities = 36/41 (87%) Strand = Plus / Minus Query: 446 ttgaaggcagactcggtccagatcacaaaccggccaaggtg 486 ||||||||| |||||||||||| || || ||||||||||| Sbjct: 910667 ttgaaggcaccctcggtccagatgacgaatcggccaaggtg 910627
>dbj|AP006663.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT48G05, TM0358, complete sequence Length = 111995 Score = 42.1 bits (21), Expect = 2.2 Identities = 36/41 (87%) Strand = Plus / Minus Query: 461 gtccagatcacaaaccggccaaggtggccaccaggggcaag 501 ||||||||||| |||| |||||||| |||||||| ||||| Sbjct: 43037 gtccagatcacgaacctcccaaggtgcccaccaggtgcaag 42997
>gb|AC124634.24| Mus musculus chromosome 18, clone RP23-450K16, complete sequence Length = 178989 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 313 ctggtaccacgccttccctgc 333 ||||||||||||||||||||| Sbjct: 19419 ctggtaccacgccttccctgc 19399
>gb|AC123719.10| Mus musculus chromosome 13, clone RP23-412A14, complete sequence Length = 202533 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 gagataaccagctaccaaaa 123 |||||||||||||||||||| Sbjct: 77575 gagataaccagctaccaaaa 77594
>gb|AC144758.2| Danio rerio, complete sequence Length = 177787 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 caatgacaaaatcatacttt 177 |||||||||||||||||||| Sbjct: 43519 caatgacaaaatcatacttt 43538
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 555 ggaaggccttgacgatcttg 574 |||||||||||||||||||| Sbjct: 964194 ggaaggccttgacgatcttg 964213
>gb|AC127292.4| Mus musculus BAC clone RP23-375J3 from chromosome 9, complete sequence Length = 157088 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 taaccagctaccaaaacagc 127 |||||||||||||||||||| Sbjct: 42556 taaccagctaccaaaacagc 42537
>emb|BX901898.15| Zebrafish DNA sequence from clone DKEY-148E3 in linkage group 1, complete sequence Length = 249378 Score = 40.1 bits (20), Expect = 8.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 379 ggagttaatcttgtccttcttcttggag 406 ||||| ||||||||| |||||||||||| Sbjct: 205957 ggagtcaatcttgtcattcttcttggag 205984
>gb|AC159895.2| Mus musculus BAC clone RP23-260J19 from chromosome 9, complete sequence Length = 191882 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 taaccagctaccaaaacagc 127 |||||||||||||||||||| Sbjct: 130627 taaccagctaccaaaacagc 130608
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 571 cttggagccctcggtgccgt 590 |||||||||||||||||||| Sbjct: 907106 cttggagccctcggtgccgt 907125
>emb|BX247877.13| Zebrafish DNA sequence from clone DKEY-16J24, complete sequence Length = 189537 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 58 tgccacagaacatgtctcgaaaaa 81 |||||||||||||||||| ||||| Sbjct: 90088 tgccacagaacatgtctccaaaaa 90065
>gb|AC159333.7| Mus musculus 10 BAC RP23-409C14 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 201801 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 taagagtatatgaaaaacag 20 |||||||||||||||||||| Sbjct: 61275 taagagtatatgaaaaacag 61256
>gb|AE004887.1| Pseudomonas aeruginosa PAO1, section 448 of 529 of the complete genome Length = 10139 Score = 40.1 bits (20), Expect = 8.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 475 ccggccaaggtggccaccaggggcaaggtcga 506 ||||||||||||| || || |||||||||||| Sbjct: 7652 ccggccaaggtggacatcaagggcaaggtcga 7683
>dbj|AB175022.1| Burkholderia cepacia cheS, limS genes for cholesterol esterase, lipase chaperone, complete cds Length = 3048 Score = 40.1 bits (20), Expect = 8.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 496 ggcaaggtcgagcaggttgaggcgctcgacgt 527 |||| ||||| |||||| |||||||||||||| Sbjct: 2125 ggcacggtcgcgcaggtcgaggcgctcgacgt 2156
>ref|XM_311909.2| Anopheles gambiae str. PEST ENSANGP00000010912 (ENSANGG00000008423), partial mRNA Length = 7578 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 434 tcgtccagcttcttgaaggc 453 |||||||||||||||||||| Sbjct: 2108 tcgtccagcttcttgaaggc 2089
>emb|BX511306.10| Zebrafish DNA sequence from clone DKEY-219L12 in linkage group 19, complete sequence Length = 223646 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 155 acacaatgacaaaatcatac 174 |||||||||||||||||||| Sbjct: 55500 acacaatgacaaaatcatac 55481
>emb|Z73316.1|SCYLR144C S.cerevisiae chromosome XII reading frame ORF YLR144c Length = 2781 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 167 aatcatactttagggtctcaaagg 190 ||||||||||||| |||||||||| Sbjct: 2183 aatcatactttagcgtctcaaagg 2160
>gb|BT001354.1| Drosophila melanogaster AT27295 full insert cDNA Length = 2102 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 471 caaaccggccaaggtggcca 490 |||||||||||||||||||| Sbjct: 1239 caaaccggccaaggtggcca 1220
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 agacgtcgaactcggtgtag 292 |||||||||||||||||||| Sbjct: 4727569 agacgtcgaactcggtgtag 4727550
>gb|U53879.1|YSCL9634 Saccharomyces cerevisiae chromosome XII cosmid 9634 Length = 39322 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 167 aatcatactttagggtctcaaagg 190 ||||||||||||| |||||||||| Sbjct: 1962 aatcatactttagcgtctcaaagg 1939 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,069,345 Number of Sequences: 3902068 Number of extensions: 5069345 Number of successful extensions: 101332 Number of sequences better than 10.0: 82 Number of HSP's better than 10.0 without gapping: 82 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 100887 Number of HSP's gapped (non-prelim): 443 length of query: 624 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 601 effective length of database: 17,143,297,704 effective search space: 10303121920104 effective search space used: 10303121920104 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
