ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags4k08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1RS4_MAIZE (O22424) 40S ribosomal protein S4 135 8e-33
2RS4_SOLTU (P46300) 40S ribosomal protein S4 130 7e-31
3RS4_PRUAR (O81363) 40S ribosomal protein S4 130 7e-31
4RS4_ARATH (P49204) 40S ribosomal protein S4 129 2e-30
5RS4_GOSHI (P46299) 40S ribosomal protein S4 127 5e-30
6RS4Y1_MONDO (O62739) 40S ribosomal protein S4, Y isoform 1 104 4e-23
7RS4X_MONDO (O62738) 40S ribosomal protein S4, X isoform 104 4e-23
8RS4_XENTR (Q6PBC4) 40S ribosomal protein S4 103 1e-22
9RS4_XENLA (P49401) 40S ribosomal protein S4 103 1e-22
10RS4_CRIGR (P47961) 40S ribosomal protein S4 103 1e-22
11RS4_CHICK (P47836) 40S ribosomal protein S4 103 1e-22
12RS4X_RAT (P62703) 40S ribosomal protein S4, X isoform 103 1e-22
13RS4X_MOUSE (P62702) 40S ribosomal protein S4, X isoform 103 1e-22
14RS4X_MESAU (P62704) 40S ribosomal protein S4, X isoform 103 1e-22
15RS4X_MACFU (Q76MY1) 40S ribosomal protein S4, X isoform 103 1e-22
16RS4X_HUMAN (P62701) 40S ribosomal protein S4, X isoform (Single ... 103 1e-22
17RS4X_FELCA (P62705) 40S ribosomal protein S4, X isoform 103 1e-22
18RS4X_CERAE (Q76N24) 40S ribosomal protein S4, X isoform 103 1e-22
19RS4X_BRARE (Q642H9) 40S ribosomal protein S4, X isoform 102 2e-22
20RS4Y1_PONPY (Q861U7) 40S ribosomal protein S4, Y isoform 1 102 3e-22
21RS4Y1_MACFU (P79183) 40S ribosomal protein S4, Y isoform 1 102 3e-22
22RS4Y1_HUMAN (P22090) 40S ribosomal protein S4, Y isoform 1 101 5e-22
23RS4Y1_GORGO (Q861U8) 40S ribosomal protein S4, Y isoform 1 100 8e-22
24RS4_DROME (P41042) 40S ribosomal protein S4 100 8e-22
25RS4_ORYSA (P49398) 40S ribosomal protein S4 (SCAR protein SS620) 89 2e-21
26RS4Y1_PANTR (Q861U9) 40S ribosomal protein S4, Y isoform 1 99 2e-21
27RS4Y1_PANPA (Q861V0) 40S ribosomal protein S4, Y isoform 1 99 2e-21
28RS4_ICTPU (Q90YS0) 40S ribosomal protein S4 99 3e-21
29RS4Y2_PANTR (Q6GVM7) 40S ribosomal protein S4, Y isoform 2 99 3e-21
30RS4Y2_HUMAN (Q8TD47) 40S ribosomal protein S4, Y isoform 2 97 1e-20
31RS4B_SCHPO (Q9USW5) 40S ribosomal protein S4-B 90 1e-18
32RS4C_SCHPO (Q9P4W9) 40S ribosomal protein S4-C 89 2e-18
33RS4A_SCHPO (P87158) 40S ribosomal protein S4-A 89 2e-18
34RS4_YARLI (O59950) 40S ribosomal protein S4 (S7) 87 1e-17
35RS4_CANAL (P47837) 40S ribosomal protein S4 (S7) 86 2e-17
36RS4_YEAST (P05753) 40S ribosomal protein S4 (S7) (YS6) (RP5) 83 2e-16
37RS4_CAEEL (Q9N3X2) 40S ribosomal protein S4 82 4e-16
38RS4_DICDI (P51405) 40S ribosomal protein S4 80 2e-15
39RS4E_AERPE (Q9YF85) 30S ribosomal protein S4e 45 6e-05
40RS4_HORSE (P55832) 40S ribosomal protein S4 (Fragment) 44 9e-05
41RS4_BOVIN (P79103) 40S ribosomal protein S4 (Fragment) 44 9e-05
42FOSB_BACLD (Q65KJ5) Metallothiol transferase fosB (EC 2.5.1.-) (... 34 0.097
43RS4_CHLS6 (Q40941) 40S ribosomal protein S4 31 0.82
44YCGV_ECO57 (Q8X583) Hypothetical protein ycgV 29 3.1
45MEGF8_HUMAN (Q7Z7M0) Multiple epidermal growth factor-like domai... 28 4.1
46MEGF8_MOUSE (P60882) Multiple epidermal growth factor-like domai... 28 5.3
47ACHA5_PANTR (Q5IS51) Neuronal acetylcholine receptor protein, al... 28 7.0
48ACHA5_HUMAN (P30532) Neuronal acetylcholine receptor protein, al... 28 7.0
49LEU1_SOYBN (Q39891) Probable 2-isopropylmalate synthase (EC 2.3.... 28 7.0
50SYC2_STRAW (Q828M2) Putative cysteinyl-tRNA synthetase 2 (EC 6.1... 27 9.1
51ACHA5_RAT (P20420) Neuronal acetylcholine receptor protein, alph... 27 9.1
52CELR1_HUMAN (Q9NYQ6) Cadherin EGF LAG seven-pass G-type receptor... 27 9.1 
>RS4_MAIZE (O22424) 40S ribosomal protein S4|
          Length = 265

 Score =  135 bits (340), Expect(2) = 8e-33
 Identities = 65/79 (82%), Positives = 69/79 (87%)
 Frame = -2

Query: 349 GXVVMVXGGRXXXRVGVIKNREKHKGTFETIHVEXAQGHQFAXRLGNVFTIGKGXKPWVS 170
           G VVMV GGR   RVGVIKNREKHKG+FETIHVE + GHQFA R+GNVFTIGKG KPWVS
Sbjct: 178 GNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDSLGHQFATRMGNVFTIGKGNKPWVS 237

Query: 169 LPKGKGIXLTIIEEQRKRD 113
           LPKGKGI L+IIEEQRKRD
Sbjct: 238 LPKGKGIKLSIIEEQRKRD 256



 Score = 22.7 bits (47), Expect(2) = 8e-33
 Identities = 10/12 (83%), Positives = 10/12 (83%)
 Frame = -1

Query: 386 TNKIVXFIKFXV 351
           TNKIV FIKF V
Sbjct: 166 TNKIVDFIKFDV 177
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>RS4_SOLTU (P46300) 40S ribosomal protein S4|
          Length = 264

 Score =  130 bits (327), Expect(2) = 7e-31
 Identities = 60/78 (76%), Positives = 68/78 (87%)
 Frame = -2

Query: 349 GXVVMVXGGRXXXRVGVIKNREKHKGTFETIHVEXAQGHQFAXRLGNVFTIGKGXKPWVS 170
           G VVMV GGR   RVGVIKNREKHKG+FET+H++ +QGH+FA RLGNVFT+GKG KPWVS
Sbjct: 178 GNVVMVTGGRNRGRVGVIKNREKHKGSFETLHIQDSQGHEFATRLGNVFTLGKGTKPWVS 237

Query: 169 LPKGKGIXLTIIEEQRKR 116
           LPKGKGI LTIIE+ RKR
Sbjct: 238 LPKGKGIKLTIIEDARKR 255



 Score = 21.2 bits (43), Expect(2) = 7e-31
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -1

Query: 386 TNKIVXFIKFXV 351
           +NKIV FIKF V
Sbjct: 166 SNKIVDFIKFDV 177
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>RS4_PRUAR (O81363) 40S ribosomal protein S4|
          Length = 261

 Score =  130 bits (327), Expect(2) = 7e-31
 Identities = 62/78 (79%), Positives = 67/78 (85%)
 Frame = -2

Query: 349 GXVVMVXGGRXXXRVGVIKNREKHKGTFETIHVEXAQGHQFAXRLGNVFTIGKGXKPWVS 170
           G VVMV GGR   RVGVIKNREKHKG+FETIHV+ A GH+FA RLGNVFTIGKG KPWVS
Sbjct: 174 GNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLGNVFTIGKGTKPWVS 233

Query: 169 LPKGKGIXLTIIEEQRKR 116
           LPKGKGI LTI+EE +KR
Sbjct: 234 LPKGKGIKLTILEEAKKR 251



 Score = 21.2 bits (43), Expect(2) = 7e-31
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -1

Query: 386 TNKIVXFIKFXV 351
           TNKI  FIKF V
Sbjct: 162 TNKITDFIKFDV 173
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>RS4_ARATH (P49204) 40S ribosomal protein S4|
          Length = 262

 Score =  129 bits (325), Expect(2) = 2e-30
 Identities = 61/78 (78%), Positives = 67/78 (85%)
 Frame = -2

Query: 349 GXVVMVXGGRXXXRVGVIKNREKHKGTFETIHVEXAQGHQFAXRLGNVFTIGKGXKPWVS 170
           G VVMV GGR   RVGVIKNREKHKG+FETIH++ + GH+FA RLGNV+TIGKG KPWVS
Sbjct: 178 GNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVS 237

Query: 169 LPKGKGIXLTIIEEQRKR 116
           LPKGKGI LTIIEE RKR
Sbjct: 238 LPKGKGIKLTIIEEARKR 255



 Score = 20.8 bits (42), Expect(2) = 2e-30
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -1

Query: 383 NKIVXFIKFXV 351
           NKIV FIKF V
Sbjct: 167 NKIVEFIKFDV 177
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>RS4_GOSHI (P46299) 40S ribosomal protein S4|
          Length = 262

 Score =  127 bits (320), Expect(2) = 5e-30
 Identities = 62/78 (79%), Positives = 66/78 (84%)
 Frame = -2

Query: 349 GXVVMVXGGRXXXRVGVIKNREKHKGTFETIHVEXAQGHQFAXRLGNVFTIGKGXKPWVS 170
           G VVMV GGR   RVGVIKNREKHKG+FETIHV+ A GH+FA RLGNVFTIGKG KPWVS
Sbjct: 178 GNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDAAGHEFATRLGNVFTIGKGTKPWVS 237

Query: 169 LPKGKGIXLTIIEEQRKR 116
           LPK KGI L+IIEE RKR
Sbjct: 238 LPKRKGIKLSIIEEARKR 255



 Score = 21.2 bits (43), Expect(2) = 5e-30
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -1

Query: 386 TNKIVXFIKFXV 351
           +NKIV FIKF V
Sbjct: 166 SNKIVDFIKFDV 177
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>RS4Y1_MONDO (O62739) 40S ribosomal protein S4, Y isoform 1|
          Length = 262

 Score =  104 bits (260), Expect = 4e-23
 Identities = 47/78 (60%), Positives = 58/78 (74%)
 Frame = -2

Query: 349 GXVVMVXGGRXXXRVGVIKNREKHKGTFETIHVEXAQGHQFAXRLGNVFTIGKGXKPWVS 170
           G + MV GG    R+GVI NREKH G+F+ +HV+ A G+ FA RL N+F IGKG KPW+S
Sbjct: 177 GNLCMVTGGANLGRIGVITNREKHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWIS 236

Query: 169 LPKGKGIXLTIIEEQRKR 116
           LP+GKGI LTI EE+ KR
Sbjct: 237 LPRGKGIRLTIAEERDKR 254
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>RS4X_MONDO (O62738) 40S ribosomal protein S4, X isoform|
          Length = 262

 Score =  104 bits (260), Expect = 4e-23
 Identities = 47/78 (60%), Positives = 58/78 (74%)
 Frame = -2

Query: 349 GXVVMVXGGRXXXRVGVIKNREKHKGTFETIHVEXAQGHQFAXRLGNVFTIGKGXKPWVS 170
           G + MV GG    R+GVI NREKH G+F+ +HV+ A G+ FA RL N+F IGKG KPW+S
Sbjct: 177 GNMCMVTGGANLGRIGVITNREKHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWIS 236

Query: 169 LPKGKGIXLTIIEEQRKR 116
           LP+GKGI LTI EE+ KR
Sbjct: 237 LPRGKGIRLTIAEERDKR 254
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>RS4_XENTR (Q6PBC4) 40S ribosomal protein S4|
          Length = 262

 Score =  103 bits (257), Expect = 1e-22
 Identities = 46/78 (58%), Positives = 58/78 (74%)
 Frame = -2

Query: 349 GXVVMVXGGRXXXRVGVIKNREKHKGTFETIHVEXAQGHQFAXRLGNVFTIGKGXKPWVS 170
           G + MV GG    R+GVI NRE+H G+F+ +HV+ A G+ FA RL N+F IGKG KPW+S
Sbjct: 177 GNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWIS 236

Query: 169 LPKGKGIXLTIIEEQRKR 116
           LP+GKGI LTI EE+ KR
Sbjct: 237 LPRGKGIRLTIAEERDKR 254
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>RS4_XENLA (P49401) 40S ribosomal protein S4|
          Length = 262

 Score =  103 bits (257), Expect = 1e-22
 Identities = 46/78 (58%), Positives = 58/78 (74%)
 Frame = -2

Query: 349 GXVVMVXGGRXXXRVGVIKNREKHKGTFETIHVEXAQGHQFAXRLGNVFTIGKGXKPWVS 170
           G + MV GG    R+GVI NRE+H G+F+ +HV+ A G+ FA RL N+F IGKG KPW+S
Sbjct: 177 GNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNNFATRLSNIFVIGKGNKPWIS 236

Query: 169 LPKGKGIXLTIIEEQRKR 116
           LP+GKGI LTI EE+ KR
Sbjct: 237 LPRGKGIRLTIAEERDKR 254
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>RS4_CRIGR (P47961) 40S ribosomal protein S4|
          Length = 262

 Score =  103 bits (257), Expect = 1e-22
 Identities = 46/78 (58%), Positives = 58/78 (74%)
 Frame = -2

Query: 349 GXVVMVXGGRXXXRVGVIKNREKHKGTFETIHVEXAQGHQFAXRLGNVFTIGKGXKPWVS 170
           G + MV GG    R+GVI NRE+H G+F+ +HV+ A G+ FA RL N+F IGKG KPW+S
Sbjct: 177 GNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWIS 236

Query: 169 LPKGKGIXLTIIEEQRKR 116
           LP+GKGI LTI EE+ KR
Sbjct: 237 LPRGKGIRLTIAEERDKR 254
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>RS4_CHICK (P47836) 40S ribosomal protein S4|
          Length = 262

 Score =  103 bits (257), Expect = 1e-22
 Identities = 46/78 (58%), Positives = 58/78 (74%)
 Frame = -2

Query: 349 GXVVMVXGGRXXXRVGVIKNREKHKGTFETIHVEXAQGHQFAXRLGNVFTIGKGXKPWVS 170
           G + MV GG    R+GVI NRE+H G+F+ +HV+ A G+ FA RL N+F IGKG KPW+S
Sbjct: 177 GNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWIS 236

Query: 169 LPKGKGIXLTIIEEQRKR 116
           LP+GKGI LTI EE+ KR
Sbjct: 237 LPRGKGIRLTIAEERDKR 254
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>RS4X_RAT (P62703) 40S ribosomal protein S4, X isoform|
          Length = 262

 Score =  103 bits (257), Expect = 1e-22
 Identities = 46/78 (58%), Positives = 58/78 (74%)
 Frame = -2

Query: 349 GXVVMVXGGRXXXRVGVIKNREKHKGTFETIHVEXAQGHQFAXRLGNVFTIGKGXKPWVS 170
           G + MV GG    R+GVI NRE+H G+F+ +HV+ A G+ FA RL N+F IGKG KPW+S
Sbjct: 177 GNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWIS 236

Query: 169 LPKGKGIXLTIIEEQRKR 116
           LP+GKGI LTI EE+ KR
Sbjct: 237 LPRGKGIRLTIAEERDKR 254
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>RS4X_MOUSE (P62702) 40S ribosomal protein S4, X isoform|
          Length = 262

 Score =  103 bits (257), Expect = 1e-22
 Identities = 46/78 (58%), Positives = 58/78 (74%)
 Frame = -2

Query: 349 GXVVMVXGGRXXXRVGVIKNREKHKGTFETIHVEXAQGHQFAXRLGNVFTIGKGXKPWVS 170
           G + MV GG    R+GVI NRE+H G+F+ +HV+ A G+ FA RL N+F IGKG KPW+S
Sbjct: 177 GNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWIS 236

Query: 169 LPKGKGIXLTIIEEQRKR 116
           LP+GKGI LTI EE+ KR
Sbjct: 237 LPRGKGIRLTIAEERDKR 254
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>RS4X_MESAU (P62704) 40S ribosomal protein S4, X isoform|
          Length = 262

 Score =  103 bits (257), Expect = 1e-22
 Identities = 46/78 (58%), Positives = 58/78 (74%)
 Frame = -2

Query: 349 GXVVMVXGGRXXXRVGVIKNREKHKGTFETIHVEXAQGHQFAXRLGNVFTIGKGXKPWVS 170
           G + MV GG    R+GVI NRE+H G+F+ +HV+ A G+ FA RL N+F IGKG KPW+S
Sbjct: 177 GNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWIS 236

Query: 169 LPKGKGIXLTIIEEQRKR 116
           LP+GKGI LTI EE+ KR
Sbjct: 237 LPRGKGIRLTIAEERDKR 254
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>RS4X_MACFU (Q76MY1) 40S ribosomal protein S4, X isoform|
          Length = 262

 Score =  103 bits (257), Expect = 1e-22
 Identities = 46/78 (58%), Positives = 58/78 (74%)
 Frame = -2

Query: 349 GXVVMVXGGRXXXRVGVIKNREKHKGTFETIHVEXAQGHQFAXRLGNVFTIGKGXKPWVS 170
           G + MV GG    R+GVI NRE+H G+F+ +HV+ A G+ FA RL N+F IGKG KPW+S
Sbjct: 177 GNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWIS 236

Query: 169 LPKGKGIXLTIIEEQRKR 116
           LP+GKGI LTI EE+ KR
Sbjct: 237 LPRGKGIRLTIAEERDKR 254
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>RS4X_HUMAN (P62701) 40S ribosomal protein S4, X isoform (Single copy abundant|
           mRNA protein) (SCR10)
          Length = 262

 Score =  103 bits (257), Expect = 1e-22
 Identities = 46/78 (58%), Positives = 58/78 (74%)
 Frame = -2

Query: 349 GXVVMVXGGRXXXRVGVIKNREKHKGTFETIHVEXAQGHQFAXRLGNVFTIGKGXKPWVS 170
           G + MV GG    R+GVI NRE+H G+F+ +HV+ A G+ FA RL N+F IGKG KPW+S
Sbjct: 177 GNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWIS 236

Query: 169 LPKGKGIXLTIIEEQRKR 116
           LP+GKGI LTI EE+ KR
Sbjct: 237 LPRGKGIRLTIAEERDKR 254
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>RS4X_FELCA (P62705) 40S ribosomal protein S4, X isoform|
          Length = 262

 Score =  103 bits (257), Expect = 1e-22
 Identities = 46/78 (58%), Positives = 58/78 (74%)
 Frame = -2

Query: 349 GXVVMVXGGRXXXRVGVIKNREKHKGTFETIHVEXAQGHQFAXRLGNVFTIGKGXKPWVS 170
           G + MV GG    R+GVI NRE+H G+F+ +HV+ A G+ FA RL N+F IGKG KPW+S
Sbjct: 177 GNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWIS 236

Query: 169 LPKGKGIXLTIIEEQRKR 116
           LP+GKGI LTI EE+ KR
Sbjct: 237 LPRGKGIRLTIAEERDKR 254
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>RS4X_CERAE (Q76N24) 40S ribosomal protein S4, X isoform|
          Length = 262

 Score =  103 bits (257), Expect = 1e-22
 Identities = 46/78 (58%), Positives = 58/78 (74%)
 Frame = -2

Query: 349 GXVVMVXGGRXXXRVGVIKNREKHKGTFETIHVEXAQGHQFAXRLGNVFTIGKGXKPWVS 170
           G + MV GG    R+GVI NRE+H G+F+ +HV+ A G+ FA RL N+F IGKG KPW+S
Sbjct: 177 GNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWIS 236

Query: 169 LPKGKGIXLTIIEEQRKR 116
           LP+GKGI LTI EE+ KR
Sbjct: 237 LPRGKGIRLTIAEERDKR 254
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>RS4X_BRARE (Q642H9) 40S ribosomal protein S4, X isoform|
          Length = 262

 Score =  102 bits (254), Expect = 2e-22
 Identities = 46/78 (58%), Positives = 58/78 (74%)
 Frame = -2

Query: 349 GXVVMVXGGRXXXRVGVIKNREKHKGTFETIHVEXAQGHQFAXRLGNVFTIGKGXKPWVS 170
           G + MV GG    R+GVI NREKH G+F+ +HV+ + G+ FA RL N+F IGKG KPWVS
Sbjct: 177 GNMCMVTGGANLGRIGVITNREKHPGSFDVVHVKDSIGNSFATRLSNIFVIGKGNKPWVS 236

Query: 169 LPKGKGIXLTIIEEQRKR 116
           LP+GKG+ LTI EE+ KR
Sbjct: 237 LPRGKGVRLTIAEERDKR 254
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>RS4Y1_PONPY (Q861U7) 40S ribosomal protein S4, Y isoform 1|
          Length = 262

 Score =  102 bits (253), Expect = 3e-22
 Identities = 46/78 (58%), Positives = 57/78 (73%)
 Frame = -2

Query: 349 GXVVMVXGGRXXXRVGVIKNREKHKGTFETIHVEXAQGHQFAXRLGNVFTIGKGXKPWVS 170
           G V MV GG    RVGVI NRE+H G+F+ +HV+ A G+ FA R+ N+F IG G KPW+S
Sbjct: 177 GNVCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRISNIFVIGNGNKPWIS 236

Query: 169 LPKGKGIXLTIIEEQRKR 116
           LP+GKGI LTI EE+ KR
Sbjct: 237 LPRGKGIRLTIAEERDKR 254
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>RS4Y1_MACFU (P79183) 40S ribosomal protein S4, Y isoform 1|
          Length = 262

 Score =  102 bits (253), Expect = 3e-22
 Identities = 46/78 (58%), Positives = 57/78 (73%)
 Frame = -2

Query: 349 GXVVMVXGGRXXXRVGVIKNREKHKGTFETIHVEXAQGHQFAXRLGNVFTIGKGXKPWVS 170
           G V MV GG    RVGVI NRE+H G+F+ +HV+ A G+ FA R+ N+F IG G KPW+S
Sbjct: 177 GNVCMVIGGANLGRVGVITNRERHPGSFDVVHVKDASGNSFATRISNIFVIGNGNKPWIS 236

Query: 169 LPKGKGIXLTIIEEQRKR 116
           LP+GKGI LTI EE+ KR
Sbjct: 237 LPRGKGIRLTIAEERDKR 254
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>RS4Y1_HUMAN (P22090) 40S ribosomal protein S4, Y isoform 1|
          Length = 262

 Score =  101 bits (251), Expect = 5e-22
 Identities = 45/78 (57%), Positives = 57/78 (73%)
 Frame = -2

Query: 349 GXVVMVXGGRXXXRVGVIKNREKHKGTFETIHVEXAQGHQFAXRLGNVFTIGKGXKPWVS 170
           G + MV GG    RVGVI NRE+H G+F+ +HV+ A G+ FA RL N+F IG G KPW+S
Sbjct: 177 GNLCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWIS 236

Query: 169 LPKGKGIXLTIIEEQRKR 116
           LP+GKGI LT+ EE+ KR
Sbjct: 237 LPRGKGIRLTVAEERDKR 254
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>RS4Y1_GORGO (Q861U8) 40S ribosomal protein S4, Y isoform 1|
          Length = 262

 Score =  100 bits (249), Expect = 8e-22
 Identities = 44/78 (56%), Positives = 57/78 (73%)
 Frame = -2

Query: 349 GXVVMVXGGRXXXRVGVIKNREKHKGTFETIHVEXAQGHQFAXRLGNVFTIGKGXKPWVS 170
           G + MV GG    RVGVI NRE+H G+F+ +HV+ A G+ FA R+ N+F IG G KPW+S
Sbjct: 177 GNLCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRISNIFVIGNGNKPWIS 236

Query: 169 LPKGKGIXLTIIEEQRKR 116
           LP+GKGI LT+ EE+ KR
Sbjct: 237 LPRGKGIRLTVAEERDKR 254
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>RS4_DROME (P41042) 40S ribosomal protein S4|
          Length = 261

 Score =  100 bits (249), Expect = 8e-22
 Identities = 44/78 (56%), Positives = 59/78 (75%)
 Frame = -2

Query: 349 GXVVMVXGGRXXXRVGVIKNREKHKGTFETIHVEXAQGHQFAXRLGNVFTIGKGXKPWVS 170
           G + M+ GGR   RVG + NRE+H G+F+ +H++ +QGH FA RL NVF IGKG KP++S
Sbjct: 178 GNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFIIGKGNKPYIS 237

Query: 169 LPKGKGIXLTIIEEQRKR 116
           LPKGKG+ L+I EE+ KR
Sbjct: 238 LPKGKGVKLSIAEERDKR 255
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>RS4_ORYSA (P49398) 40S ribosomal protein S4 (SCAR protein SS620)|
          Length = 268

 Score = 89.4 bits (220), Expect(2) = 2e-21
 Identities = 42/49 (85%), Positives = 44/49 (89%)
 Frame = -2

Query: 277 KGTFETIHVEXAQGHQFAXRLGNVFTIGKGXKPWVSLPKGKGIXLTIIE 131
           KG+FETIHVE A GHQFA RLGNVFTIGKG KPWVSLPKGKGI L+IIE
Sbjct: 205 KGSFETIHVEDALGHQFATRLGNVFTIGKGNKPWVSLPKGKGIKLSIIE 253



 Score = 30.8 bits (68), Expect(2) = 2e-21
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -1

Query: 338 HGXWWAXXXACWCDQEQGEA*GN 270
           HG W     A WCDQ+QGEA G+
Sbjct: 186 HGDW-RRNTAVWCDQQQGEAKGS 207
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>RS4Y1_PANTR (Q861U9) 40S ribosomal protein S4, Y isoform 1|
          Length = 262

 Score = 99.0 bits (245), Expect = 2e-21
 Identities = 44/78 (56%), Positives = 56/78 (71%)
 Frame = -2

Query: 349 GXVVMVXGGRXXXRVGVIKNREKHKGTFETIHVEXAQGHQFAXRLGNVFTIGKGXKPWVS 170
           G + MV GG    RVGVI NRE+H G+F+ +HV+ A G+ FA RL N+F IG G KPW+S
Sbjct: 177 GNLCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWIS 236

Query: 169 LPKGKGIXLTIIEEQRKR 116
           LP+GKGI LT+  E+ KR
Sbjct: 237 LPRGKGIRLTVAAERDKR 254
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>RS4Y1_PANPA (Q861V0) 40S ribosomal protein S4, Y isoform 1|
          Length = 262

 Score = 99.0 bits (245), Expect = 2e-21
 Identities = 44/78 (56%), Positives = 56/78 (71%)
 Frame = -2

Query: 349 GXVVMVXGGRXXXRVGVIKNREKHKGTFETIHVEXAQGHQFAXRLGNVFTIGKGXKPWVS 170
           G + MV GG    RVGVI NRE+H G+F+ +HV+ A G+ FA RL N+F IG G KPW+S
Sbjct: 177 GNLCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWIS 236

Query: 169 LPKGKGIXLTIIEEQRKR 116
           LP+GKGI LT+  E+ KR
Sbjct: 237 LPRGKGIRLTVAAERDKR 254
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>RS4_ICTPU (Q90YS0) 40S ribosomal protein S4|
          Length = 262

 Score = 98.6 bits (244), Expect = 3e-21
 Identities = 44/78 (56%), Positives = 57/78 (73%)
 Frame = -2

Query: 349 GXVVMVXGGRXXXRVGVIKNREKHKGTFETIHVEXAQGHQFAXRLGNVFTIGKGXKPWVS 170
           G + MV GG    R+GVI NRE+H G+F+ +HV+ + G+ FA RL N+F IGKG K WVS
Sbjct: 177 GNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDSTGNSFATRLSNIFVIGKGNKAWVS 236

Query: 169 LPKGKGIXLTIIEEQRKR 116
           +P+GKGI LTI EE+ KR
Sbjct: 237 IPRGKGIRLTIAEERDKR 254
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>RS4Y2_PANTR (Q6GVM7) 40S ribosomal protein S4, Y isoform 2|
          Length = 262

 Score = 98.6 bits (244), Expect = 3e-21
 Identities = 44/78 (56%), Positives = 56/78 (71%)
 Frame = -2

Query: 349 GXVVMVXGGRXXXRVGVIKNREKHKGTFETIHVEXAQGHQFAXRLGNVFTIGKGXKPWVS 170
           G V MV GG    RVGV+ NRE+H G+ + +HV+ A G+ FA R+ N+F IG G KPW+S
Sbjct: 177 GNVCMVIGGANLGRVGVVTNRERHPGSCDVVHVKDANGNSFATRISNIFVIGNGNKPWIS 236

Query: 169 LPKGKGIXLTIIEEQRKR 116
           LP+GKGI LTI EE+ KR
Sbjct: 237 LPRGKGIRLTIAEERDKR 254
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>RS4Y2_HUMAN (Q8TD47) 40S ribosomal protein S4, Y isoform 2|
          Length = 262

 Score = 96.7 bits (239), Expect = 1e-20
 Identities = 44/78 (56%), Positives = 55/78 (70%)
 Frame = -2

Query: 349 GXVVMVXGGRXXXRVGVIKNREKHKGTFETIHVEXAQGHQFAXRLGNVFTIGKGXKPWVS 170
           G V MV  G    RVGVI NRE+H G+ + +HV+ A G+ FA R+ N+F IG G KPW+S
Sbjct: 177 GNVCMVIAGANLGRVGVITNRERHPGSCDVVHVKDANGNSFATRISNIFVIGNGNKPWIS 236

Query: 169 LPKGKGIXLTIIEEQRKR 116
           LP+GKGI LTI EE+ KR
Sbjct: 237 LPRGKGIRLTIAEERDKR 254
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>RS4B_SCHPO (Q9USW5) 40S ribosomal protein S4-B|
          Length = 262

 Score = 90.1 bits (222), Expect = 1e-18
 Identities = 43/75 (57%), Positives = 53/75 (70%)
 Frame = -2

Query: 340 VMVXGGRXXXRVGVIKNREKHKGTFETIHVEXAQGHQFAXRLGNVFTIGKGXKPWVSLPK 161
           VMV GGR   RVG I +RE H G+FE IHV+ A   +FA RL NVF IG+  K W+SLPK
Sbjct: 181 VMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGEAGKSWISLPK 240

Query: 160 GKGIXLTIIEEQRKR 116
           GKG+ L+I EE+ +R
Sbjct: 241 GKGVKLSITEERDRR 255
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>RS4C_SCHPO (Q9P4W9) 40S ribosomal protein S4-C|
          Length = 262

 Score = 89.4 bits (220), Expect = 2e-18
 Identities = 43/75 (57%), Positives = 53/75 (70%)
 Frame = -2

Query: 340 VMVXGGRXXXRVGVIKNREKHKGTFETIHVEXAQGHQFAXRLGNVFTIGKGXKPWVSLPK 161
           VMV GGR   RVG I +RE H G+FE IHV+ A   +FA RL NVF IG+  K W+SLPK
Sbjct: 181 VMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLPK 240

Query: 160 GKGIXLTIIEEQRKR 116
           GKG+ L+I EE+ +R
Sbjct: 241 GKGVKLSITEERDRR 255
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>RS4A_SCHPO (P87158) 40S ribosomal protein S4-A|
          Length = 262

 Score = 89.4 bits (220), Expect = 2e-18
 Identities = 43/75 (57%), Positives = 53/75 (70%)
 Frame = -2

Query: 340 VMVXGGRXXXRVGVIKNREKHKGTFETIHVEXAQGHQFAXRLGNVFTIGKGXKPWVSLPK 161
           VMV GGR   RVG I +RE H G+FE IHV+ A   +FA RL NVF IG+  K W+SLPK
Sbjct: 181 VMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLPK 240

Query: 160 GKGIXLTIIEEQRKR 116
           GKG+ L+I EE+ +R
Sbjct: 241 GKGVKLSITEERDRR 255
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>RS4_YARLI (O59950) 40S ribosomal protein S4 (S7)|
          Length = 260

 Score = 87.0 bits (214), Expect = 1e-17
 Identities = 41/78 (52%), Positives = 54/78 (69%)
 Frame = -2

Query: 349 GXVVMVXGGRXXXRVGVIKNREKHKGTFETIHVEXAQGHQFAXRLGNVFTIGKGXKPWVS 170
           G +VM  GGR   RVG I +RE+H+G F+ +H++ A  +QF  RL NVF IG+G K  +S
Sbjct: 178 GNIVMTTGGRNMGRVGTITHRERHEGGFDIVHIKDALDNQFVTRLTNVFVIGEGNKSLIS 237

Query: 169 LPKGKGIXLTIIEEQRKR 116
           LPKGKGI L+I EE+  R
Sbjct: 238 LPKGKGIKLSIAEERDAR 255
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>RS4_CANAL (P47837) 40S ribosomal protein S4 (S7)|
          Length = 262

 Score = 86.3 bits (212), Expect = 2e-17
 Identities = 44/79 (55%), Positives = 56/79 (70%), Gaps = 1/79 (1%)
 Frame = -2

Query: 349 GXVVMVXGGRXXXRVGVIKNREKHKGTFETIHVEXAQGHQFAXRLGNVFTIG-KGXKPWV 173
           G +VMV GGR   RVGVI +REK +G F+ +H++ A  + F  RL NVF IG +  KPWV
Sbjct: 178 GRLVMVTGGRNLGRVGVIVHREKLEGGFDLVHIKDALENTFVTRLSNVFVIGTEAGKPWV 237

Query: 172 SLPKGKGIXLTIIEEQRKR 116
           SLPKGKGI L+I EE+ +R
Sbjct: 238 SLPKGKGIKLSISEERDRR 256
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>RS4_YEAST (P05753) 40S ribosomal protein S4 (S7) (YS6) (RP5)|
          Length = 260

 Score = 82.8 bits (203), Expect = 2e-16
 Identities = 37/78 (47%), Positives = 54/78 (69%)
 Frame = -2

Query: 349 GXVVMVXGGRXXXRVGVIKNREKHKGTFETIHVEXAQGHQFAXRLGNVFTIGKGXKPWVS 170
           G +V V GGR   R+G I ++E+H G F+ +H++ +  + F  RL NVF IG+  KP++S
Sbjct: 177 GKLVYVTGGRNLGRIGTIVHKERHDGGFDLVHIKDSLDNTFVTRLNNVFVIGEQGKPYIS 236

Query: 169 LPKGKGIXLTIIEEQRKR 116
           LPKGKGI L+I EE+ +R
Sbjct: 237 LPKGKGIKLSIAEERDRR 254
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>RS4_CAEEL (Q9N3X2) 40S ribosomal protein S4|
          Length = 259

 Score = 81.6 bits (200), Expect = 4e-16
 Identities = 40/78 (51%), Positives = 51/78 (65%)
 Frame = -2

Query: 349 GXVVMVXGGRXXXRVGVIKNREKHKGTFETIHVEXAQGHQFAXRLGNVFTIGKGXKPWVS 170
           G +  V GGR   RVG+I +RE+  G  + IH++ + GH FA R+ NVF IGKG K  VS
Sbjct: 177 GNLAYVTGGRNVGRVGIIGHRERLPGASDIIHIKDSAGHSFATRISNVFVIGKGNKALVS 236

Query: 169 LPKGKGIXLTIIEEQRKR 116
           LP G GI L+I EE+ KR
Sbjct: 237 LPTGAGIRLSIAEERDKR 254
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>RS4_DICDI (P51405) 40S ribosomal protein S4|
          Length = 266

 Score = 79.7 bits (195), Expect = 2e-15
 Identities = 35/71 (49%), Positives = 48/71 (67%)
 Frame = -2

Query: 337 MVXGGRXXXRVGVIKNREKHKGTFETIHVEXAQGHQFAXRLGNVFTIGKGXKPWVSLPKG 158
           M+ GG    RVG + +REKH G+F+ +HV    GHQFA RL NVF IGK  + +VSLP G
Sbjct: 181 MIVGGHNLGRVGAVTHREKHPGSFDIVHVTDTAGHQFATRLSNVFIIGKASQTFVSLPAG 240

Query: 157 KGIXLTIIEEQ 125
           KG+  + ++E+
Sbjct: 241 KGVRRSRVDER 251
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>RS4E_AERPE (Q9YF85) 30S ribosomal protein S4e|
          Length = 253

 Score = 44.7 bits (104), Expect = 6e-05
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
 Frame = -2

Query: 349 GXVVMVXGGRXXXRVGVIKNREKHKGTFET-IHVEXAQGHQFAXRLGNVFTIGKGXKPWV 173
           G + ++ GGR   RVGV+K+ +K  G   T + +E A G+ F   L  VF IG   +P +
Sbjct: 187 GAIAIIVGGRNVGRVGVVKSVQKGWGRKRTLVTLEDASGNLFQTSLDYVFVIGL-DRPVI 245

Query: 172 SLPKG 158
           SLP+G
Sbjct: 246 SLPEG 250
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>RS4_HORSE (P55832) 40S ribosomal protein S4 (Fragment)|
          Length = 194

 Score = 43.9 bits (102), Expect = 9e-05
 Identities = 18/36 (50%), Positives = 25/36 (69%)
 Frame = -2

Query: 349 GXVVMVXGGRXXXRVGVIKNREKHKGTFETIHVEXA 242
           G + MV GG    R+GVI NRE+H G+F+ +HV+ A
Sbjct: 159 GNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDA 194
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>RS4_BOVIN (P79103) 40S ribosomal protein S4 (Fragment)|
          Length = 194

 Score = 43.9 bits (102), Expect = 9e-05
 Identities = 18/36 (50%), Positives = 25/36 (69%)
 Frame = -2

Query: 349 GXVVMVXGGRXXXRVGVIKNREKHKGTFETIHVEXA 242
           G + MV GG    R+GVI NRE+H G+F+ +HV+ A
Sbjct: 159 GNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDA 194
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>FOSB_BACLD (Q65KJ5) Metallothiol transferase fosB (EC 2.5.1.-) (Fosfomycin|
           resistance protein)
          Length = 154

 Score = 33.9 bits (76), Expect = 0.097
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
 Frame = -2

Query: 307 VGVIKNREKHKGTFETIHVEXAQGHQFAXRLGNVF---TIGKGXKPWVSLPKG 158
           V V+K R++H+G  ++I+     GH+F    G+VF      +  KP +S  +G
Sbjct: 92  VNVLKGRKRHEGDRDSIYFSDPDGHKFELHTGSVFDRLQYYQNEKPHLSFHEG 144
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>RS4_CHLS6 (Q40941) 40S ribosomal protein S4|
          Length = 242

 Score = 30.8 bits (68), Expect = 0.82
 Identities = 15/61 (24%), Positives = 28/61 (45%)
 Frame = -2

Query: 349 GXVVMVXGGRXXXRVGVIKNREKHKGTFETIHVEXAQGHQFAXRLGNVFTIGKGXKPWVS 170
           G + ++  G+    + VIK   K K   + IH+E   G +   +  ++  IG+     +S
Sbjct: 178 GSLCLITRGKHLGTIAVIKEIRKTKSLRKMIHLEKIDGKKLTKKCSDLLVIGESKTSILS 237

Query: 169 L 167
           L
Sbjct: 238 L 238
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>YCGV_ECO57 (Q8X583) Hypothetical protein ycgV|
          Length = 547

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 274 GTFETIHVEXAQGHQFAXRLGNVFTIGKGXKPW 176
           GTF T++VE   G+       +V   G G KPW
Sbjct: 514 GTFTTLNVENLSGNSTFIMRADVVGEGNGVKPW 546
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>MEGF8_HUMAN (Q7Z7M0) Multiple epidermal growth factor-like domains 8 (EGF-like|
            domain-containing protein 4) (Multiple EGF-like domain
            protein 4)
          Length = 2386

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
 Frame = +1

Query: 70   QCLRIRPWQQPELRHPSSSAPQ*W*AXYPCPWGGSPKAWXP-CQW*TRCPDGWQTGDPG 243
            +C R+R   +   RHP +  P            G  +A  P C+W T CP+G   G  G
Sbjct: 1465 ECRRLRTCSECLARHPRTLQP------------GDGEASTPRCKWCTNCPEGACIGRNG 1511
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>MEGF8_MOUSE (P60882) Multiple epidermal growth factor-like domains 8 (EGF-like|
            domain-containing protein 4) (Multiple EGF-like domain
            protein 4)
          Length = 2330

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
 Frame = +1

Query: 70   QCLRIRPWQQPELRHPSSSAPQ*W*AXYPCPWGGSPKAWXP-CQW*TRCPDGWQTGDPG 243
            +C R+R   +   RHP +  P            G  +A  P C+W T CP+G   G  G
Sbjct: 1409 ECRRLRTCSECLARHPRTLQP------------GDGEASIPRCKWCTNCPEGACIGRNG 1455
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>ACHA5_PANTR (Q5IS51) Neuronal acetylcholine receptor protein, alpha-5 subunit|
           precursor
          Length = 468

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +3

Query: 231 W*PWAXSTWMVSKVPLCFSLFLITP 305
           W P+   ++++ ++PL ++LFLI P
Sbjct: 236 WYPYVTYSFVIKRLPLFYTLFLIIP 260
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>ACHA5_HUMAN (P30532) Neuronal acetylcholine receptor protein, alpha-5 subunit|
           precursor
          Length = 468

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +3

Query: 231 W*PWAXSTWMVSKVPLCFSLFLITP 305
           W P+   ++++ ++PL ++LFLI P
Sbjct: 236 WYPYVTYSFVIKRLPLFYTLFLIIP 260
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>LEU1_SOYBN (Q39891) Probable 2-isopropylmalate synthase (EC 2.3.3.13)|
           (Alpha-isopropylmalate synthase) (Alpha-IPM synthetase)
           (Late nodulin 56) (N-56)
          Length = 565

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -2

Query: 283 KHKGTFETIHVEXAQGHQFAXRLGNV 206
           KHKGT+ETI  E   GH+   R+G V
Sbjct: 345 KHKGTYETISPEEI-GHKRTTRIGIV 369
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>SYC2_STRAW (Q828M2) Putative cysteinyl-tRNA synthetase 2 (EC 6.1.1.16)|
           (Cysteine--tRNA ligase 2) (CysRS 2)
          Length = 409

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +2

Query: 161 LGEAHPRLGALA-NGEHVAQTXGKLVTLGXLNVDGLKGSLMLLPVLDH 301
           + +A+   G +A NGE ++++ G LV +  L  DG+  + + L +L H
Sbjct: 270 MAKAYVHAGMVALNGEKMSKSKGNLVFVSKLRRDGVDPAAIRLALLAH 317
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>ACHA5_RAT (P20420) Neuronal acetylcholine receptor protein, alpha-5 subunit|
           precursor
          Length = 452

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +3

Query: 231 W*PWAXSTWMVSKVPLCFSLFLITP 305
           W P+   ++++ ++PL ++LFLI P
Sbjct: 221 WYPYITYSFVIKRLPLFYTLFLIIP 245
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>CELR1_HUMAN (Q9NYQ6) Cadherin EGF LAG seven-pass G-type receptor 1 precursor|
           (Flamingo homolog 2) (hFmi2)
          Length = 3014

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -1

Query: 257 PR*XCPGSPVCXPSGQRV 204
           PR  CPG P+C P G  V
Sbjct: 162 PRPRCPGRPICLPPGGSV 179


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,543,832
Number of Sequences: 219361
Number of extensions: 873391
Number of successful extensions: 1927
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 1848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1925
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 1386249648
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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