ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags4k07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BC076833.1| Xenopus laevis blood vessel epicardial substance,... 133 2e-28
2gb|AF527799.1| Xenopus laevis bves mRNA, complete cds 133 2e-28
3gb|AF461429.1| Xenopus laevis popeye 1 protein mRNA, complete cds 125 6e-26
4emb|AL359380.16| Human DNA sequence from clone RP11-642N5 on chr... 46 0.041
5gb|AC112149.4| Mus musculus BAC clone RP23-186F18 from chromosom... 42 0.64
6emb|BX936363.13| Zebrafish DNA sequence from clone CH211-112P19 ... 42 0.64
7emb|CR628365.6| Zebrafish DNA sequence from clone CH211-137O16 i... 42 0.64
8gb|AC153981.5| Mus musculus 10 BAC RP24-112H16 (Roswell Park Can... 42 0.64
9gb|AC102514.13| Mus musculus chromosome 7, clone RP24-419H14, co... 40 2.5
10gb|AC011229.2| Homo sapiens BAC clone CTD-2004K7 from 7, complet... 40 2.5
11emb|AL139379.14| Human DNA sequence from clone RP11-358P11 on ch... 40 2.5
12gb|AC132810.2| Homo sapiens chromosome 3 clone RP11-134J14, comp... 40 2.5
13gb|AC162877.2| Mus musculus chromosome 7, clone RP24-211E6, comp... 40 2.5
14gb|AC022796.5| Homo sapiens chromosome 11, clone RP11-277K23, co... 40 2.5
15gb|AC034154.6| Homo sapiens BAC clone RP11-242D9 from 4, complet... 40 2.5
16gb|AC154357.2| Mus musculus BAC clone RP23-192E11 from chromosom... 40 2.5
17gb|AC147975.3| Pan troglodytes BAC clone CH251-510J15 from chrom... 40 2.5
18dbj|D43747.2| Homo sapiens gene for voltage-dependent calcium ch... 40 2.5
19gb|AC011700.5|AC011700 Homo sapiens Chromosome 1 BAC RP11-478J18... 40 2.5

>gb|BC076833.1| Xenopus laevis blood vessel epicardial substance, mRNA (cDNA clone
            MGC:83853 IMAGE:6643654), complete cds
          Length = 1725

 Score =  133 bits (67), Expect = 2e-28
 Identities = 122/142 (85%)
 Strand = Plus / Minus

                                                                        
Query: 13   aaggacaatatgatggtaatttaaagcttgtgatatatttcattgggtattcctgtgaag 72
            |||||||||||||| | || |||| ||||||||||||||||||  |||||| ||||||||
Sbjct: 1583 aaggacaatatgatagcaacttaaggcttgtgatatatttcataaggtatttctgtgaag 1524

                                                                        
Query: 73   aaaaacaaaaggtntcaaataaatgaggctttggtgttctatncctattgtgcataccan 132
            |||||||||| || | ||||| |||||||||||||||  |||  ||||| || |||||| 
Sbjct: 1523 aaaaacaaaaagtgtaaaatacatgaggctttggtgtattatttctattatgtataccaa 1464

                                  
Query: 133  ancaatattntatattgcttgg 154
            | ||||||| ||||||||||||
Sbjct: 1463 aacaatattgtatattgcttgg 1442



 Score = 44.1 bits (22), Expect = 0.16
 Identities = 32/34 (94%), Gaps = 1/34 (2%)
 Strand = Plus / Minus

                                              
Query: 168  aaagcattcttagtaatagaaaggaagaaacaat 201
            |||||||| |||| ||||||||||||||||||||
Sbjct: 1441 aaagcatttttag-aatagaaaggaagaaacaat 1409



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>gb|AF527799.1| Xenopus laevis bves mRNA, complete cds
          Length = 1759

 Score =  133 bits (67), Expect = 2e-28
 Identities = 122/142 (85%)
 Strand = Plus / Minus

                                                                        
Query: 13   aaggacaatatgatggtaatttaaagcttgtgatatatttcattgggtattcctgtgaag 72
            |||||||||||||| | || |||| ||||||||||||||||||  |||||| ||||||||
Sbjct: 1630 aaggacaatatgatagcaacttaaggcttgtgatatatttcataaggtatttctgtgaag 1571

                                                                        
Query: 73   aaaaacaaaaggtntcaaataaatgaggctttggtgttctatncctattgtgcataccan 132
            |||||||||| || | ||||| |||||||||||||||  |||  ||||| || |||||| 
Sbjct: 1570 aaaaacaaaaagtgtaaaatacatgaggctttggtgtattatttctattatgtataccaa 1511

                                  
Query: 133  ancaatattntatattgcttgg 154
            | ||||||| ||||||||||||
Sbjct: 1510 aacaatattgtatattgcttgg 1489



 Score = 44.1 bits (22), Expect = 0.16
 Identities = 32/34 (94%), Gaps = 1/34 (2%)
 Strand = Plus / Minus

                                              
Query: 168  aaagcattcttagtaatagaaaggaagaaacaat 201
            |||||||| |||| ||||||||||||||||||||
Sbjct: 1488 aaagcatttttag-aatagaaaggaagaaacaat 1456



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>gb|AF461429.1| Xenopus laevis popeye 1 protein mRNA, complete cds
          Length = 1556

 Score =  125 bits (63), Expect = 6e-26
 Identities = 121/142 (85%)
 Strand = Plus / Minus

                                                                        
Query: 13   aaggacaatatgatggtaatttaaagcttgtgatatatttcattgggtattcctgtgaag 72
            |||||||||||||| | || |||| ||||||||||||||||||  |||||  ||||||||
Sbjct: 1413 aaggacaatatgatagcaacttaaggcttgtgatatatttcataaggtatgtctgtgaag 1354

                                                                        
Query: 73   aaaaacaaaaggtntcaaataaatgaggctttggtgttctatncctattgtgcataccan 132
            |||||||||| || | ||||| |||||||||||||||  |||  ||||| || |||||| 
Sbjct: 1353 aaaaacaaaaagtgtaaaatacatgaggctttggtgtattatttctattatgtataccaa 1294

                                  
Query: 133  ancaatattntatattgcttgg 154
            | ||||||| ||||||||||||
Sbjct: 1293 aacaatattgtatattgcttgg 1272



 Score = 44.1 bits (22), Expect = 0.16
 Identities = 32/34 (94%), Gaps = 1/34 (2%)
 Strand = Plus / Minus

                                              
Query: 168  aaagcattcttagtaatagaaaggaagaaacaat 201
            |||||||| |||| ||||||||||||||||||||
Sbjct: 1271 aaagcatttttag-aatagaaaggaagaaacaat 1239



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>emb|AL359380.16| Human DNA sequence from clone RP11-642N5 on chromosome 6 Contains the 3'
              end of a novel gene and the 5' end of the TINAG gene for
              tubulointerstitial nephritis antigen, complete sequence
          Length = 188826

 Score = 46.1 bits (23), Expect = 0.041
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 173    attcttagtaatagaaaggaagaaaca 199
              ||||||||||||| |||||||||||||
Sbjct: 127288 attcttagtaatataaaggaagaaaca 127262



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>gb|AC112149.4| Mus musculus BAC clone RP23-186F18 from chromosome 10, complete sequence
          Length = 195384

 Score = 42.1 bits (21), Expect = 0.64
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 19     aatatgatggtaatttaaagc 39
              |||||||||||||||||||||
Sbjct: 179151 aatatgatggtaatttaaagc 179171



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>emb|BX936363.13| Zebrafish DNA sequence from clone CH211-112P19 in linkage group 11,
             complete sequence
          Length = 184849

 Score = 42.1 bits (21), Expect = 0.64
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 74    aaaacaaaaggtntcaaataaatg 97
             |||||||||||| |||||||||||
Sbjct: 25202 aaaacaaaaggtttcaaataaatg 25179



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>emb|CR628365.6| Zebrafish DNA sequence from clone CH211-137O16 in linkage group 11,
             complete sequence
          Length = 191036

 Score = 42.1 bits (21), Expect = 0.64
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 74    aaaacaaaaggtntcaaataaatg 97
             |||||||||||| |||||||||||
Sbjct: 40972 aaaacaaaaggtttcaaataaatg 40949



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>gb|AC153981.5| Mus musculus 10 BAC RP24-112H16 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 177129

 Score = 42.1 bits (21), Expect = 0.64
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 19    aatatgatggtaatttaaagc 39
             |||||||||||||||||||||
Sbjct: 26554 aatatgatggtaatttaaagc 26574



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>gb|AC102514.13| Mus musculus chromosome 7, clone RP24-419H14, complete sequence
          Length = 140911

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 174    ttcttagtaatagaaaggaagaaa 197
              ||||||||||||||||| ||||||
Sbjct: 137453 ttcttagtaatagaaagaaagaaa 137430



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>gb|AC011229.2| Homo sapiens BAC clone CTD-2004K7 from 7, complete sequence
          Length = 105040

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 66    tgtgaagaaaaacaaaaggt 85
             ||||||||||||||||||||
Sbjct: 85189 tgtgaagaaaaacaaaaggt 85208



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>emb|AL139379.14| Human DNA sequence from clone RP11-358P11 on chromosome 13 Contains a
             CpG island, complete sequence
          Length = 166237

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 168   aaagcattcttagtaatagaaagg 191
             |||||||||||| |||||||||||
Sbjct: 37634 aaagcattcttaataatagaaagg 37657



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>gb|AC132810.2| Homo sapiens chromosome 3 clone RP11-134J14, complete sequence
          Length = 146274

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 62    ttcctgtgaagaaaaacaaa 81
             ||||||||||||||||||||
Sbjct: 40356 ttcctgtgaagaaaaacaaa 40337



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>gb|AC162877.2| Mus musculus chromosome 7, clone RP24-211E6, complete sequence
          Length = 158727

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 174    ttcttagtaatagaaaggaagaaa 197
              ||||||||||||||||| ||||||
Sbjct: 103210 ttcttagtaatagaaagaaagaaa 103233



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>gb|AC022796.5| Homo sapiens chromosome 11, clone RP11-277K23, complete sequence
          Length = 115454

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 19    aatatgatggtaatttaaag 38
             ||||||||||||||||||||
Sbjct: 75695 aatatgatggtaatttaaag 75676



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>gb|AC034154.6| Homo sapiens BAC clone RP11-242D9 from 4, complete sequence
          Length = 210563

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 181   taatagaaaggaagaaacaa 200
             ||||||||||||||||||||
Sbjct: 12377 taatagaaaggaagaaacaa 12358



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>gb|AC154357.2| Mus musculus BAC clone RP23-192E11 from chromosome 9, complete sequence
          Length = 195151

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 30    aatttaaagcttgtgatata 49
             ||||||||||||||||||||
Sbjct: 40121 aatttaaagcttgtgatata 40140



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>gb|AC147975.3| Pan troglodytes BAC clone CH251-510J15 from chromosome 7, complete
             sequence
          Length = 258316

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 66    tgtgaagaaaaacaaaaggt 85
             ||||||||||||||||||||
Sbjct: 20645 tgtgaagaaaaacaaaaggt 20626



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>dbj|D43747.2| Homo sapiens gene for voltage-dependent calcium channel alpha1
            subunit, CACN4, complete cds
          Length = 29472

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 62   ttcctgtgaagaaaaacaaa 81
            ||||||||||||||||||||
Sbjct: 1553 ttcctgtgaagaaaaacaaa 1534



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>gb|AC011700.5|AC011700 Homo sapiens Chromosome 1 BAC RP11-478J18 (Roswell Park Cancer
             Institute Human BAC Library) complete sequence
          Length = 154732

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 179   agtaatagaaaggaagaaac 198
             ||||||||||||||||||||
Sbjct: 99108 agtaatagaaaggaagaaac 99127


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,314,577
Number of Sequences: 3902068
Number of extensions: 2314577
Number of successful extensions: 214024
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 213949
Number of HSP's gapped (non-prelim): 75
length of query: 201
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 179
effective length of database: 17,147,199,772
effective search space: 3069348759188
effective search space used: 3069348759188
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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