| Clone Name | rbags4k07 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BC076833.1| Xenopus laevis blood vessel epicardial substance, mRNA (cDNA clone MGC:83853 IMAGE:6643654), complete cds Length = 1725 Score = 133 bits (67), Expect = 2e-28 Identities = 122/142 (85%) Strand = Plus / Minus Query: 13 aaggacaatatgatggtaatttaaagcttgtgatatatttcattgggtattcctgtgaag 72 |||||||||||||| | || |||| |||||||||||||||||| |||||| |||||||| Sbjct: 1583 aaggacaatatgatagcaacttaaggcttgtgatatatttcataaggtatttctgtgaag 1524 Query: 73 aaaaacaaaaggtntcaaataaatgaggctttggtgttctatncctattgtgcataccan 132 |||||||||| || | ||||| ||||||||||||||| ||| ||||| || |||||| Sbjct: 1523 aaaaacaaaaagtgtaaaatacatgaggctttggtgtattatttctattatgtataccaa 1464 Query: 133 ancaatattntatattgcttgg 154 | ||||||| |||||||||||| Sbjct: 1463 aacaatattgtatattgcttgg 1442 Score = 44.1 bits (22), Expect = 0.16 Identities = 32/34 (94%), Gaps = 1/34 (2%) Strand = Plus / Minus Query: 168 aaagcattcttagtaatagaaaggaagaaacaat 201 |||||||| |||| |||||||||||||||||||| Sbjct: 1441 aaagcatttttag-aatagaaaggaagaaacaat 1409
>gb|AF527799.1| Xenopus laevis bves mRNA, complete cds Length = 1759 Score = 133 bits (67), Expect = 2e-28 Identities = 122/142 (85%) Strand = Plus / Minus Query: 13 aaggacaatatgatggtaatttaaagcttgtgatatatttcattgggtattcctgtgaag 72 |||||||||||||| | || |||| |||||||||||||||||| |||||| |||||||| Sbjct: 1630 aaggacaatatgatagcaacttaaggcttgtgatatatttcataaggtatttctgtgaag 1571 Query: 73 aaaaacaaaaggtntcaaataaatgaggctttggtgttctatncctattgtgcataccan 132 |||||||||| || | ||||| ||||||||||||||| ||| ||||| || |||||| Sbjct: 1570 aaaaacaaaaagtgtaaaatacatgaggctttggtgtattatttctattatgtataccaa 1511 Query: 133 ancaatattntatattgcttgg 154 | ||||||| |||||||||||| Sbjct: 1510 aacaatattgtatattgcttgg 1489 Score = 44.1 bits (22), Expect = 0.16 Identities = 32/34 (94%), Gaps = 1/34 (2%) Strand = Plus / Minus Query: 168 aaagcattcttagtaatagaaaggaagaaacaat 201 |||||||| |||| |||||||||||||||||||| Sbjct: 1488 aaagcatttttag-aatagaaaggaagaaacaat 1456
>gb|AF461429.1| Xenopus laevis popeye 1 protein mRNA, complete cds Length = 1556 Score = 125 bits (63), Expect = 6e-26 Identities = 121/142 (85%) Strand = Plus / Minus Query: 13 aaggacaatatgatggtaatttaaagcttgtgatatatttcattgggtattcctgtgaag 72 |||||||||||||| | || |||| |||||||||||||||||| ||||| |||||||| Sbjct: 1413 aaggacaatatgatagcaacttaaggcttgtgatatatttcataaggtatgtctgtgaag 1354 Query: 73 aaaaacaaaaggtntcaaataaatgaggctttggtgttctatncctattgtgcataccan 132 |||||||||| || | ||||| ||||||||||||||| ||| ||||| || |||||| Sbjct: 1353 aaaaacaaaaagtgtaaaatacatgaggctttggtgtattatttctattatgtataccaa 1294 Query: 133 ancaatattntatattgcttgg 154 | ||||||| |||||||||||| Sbjct: 1293 aacaatattgtatattgcttgg 1272 Score = 44.1 bits (22), Expect = 0.16 Identities = 32/34 (94%), Gaps = 1/34 (2%) Strand = Plus / Minus Query: 168 aaagcattcttagtaatagaaaggaagaaacaat 201 |||||||| |||| |||||||||||||||||||| Sbjct: 1271 aaagcatttttag-aatagaaaggaagaaacaat 1239
>emb|AL359380.16| Human DNA sequence from clone RP11-642N5 on chromosome 6 Contains the 3' end of a novel gene and the 5' end of the TINAG gene for tubulointerstitial nephritis antigen, complete sequence Length = 188826 Score = 46.1 bits (23), Expect = 0.041 Identities = 26/27 (96%) Strand = Plus / Minus Query: 173 attcttagtaatagaaaggaagaaaca 199 ||||||||||||| ||||||||||||| Sbjct: 127288 attcttagtaatataaaggaagaaaca 127262
>gb|AC112149.4| Mus musculus BAC clone RP23-186F18 from chromosome 10, complete sequence Length = 195384 Score = 42.1 bits (21), Expect = 0.64 Identities = 21/21 (100%) Strand = Plus / Plus Query: 19 aatatgatggtaatttaaagc 39 ||||||||||||||||||||| Sbjct: 179151 aatatgatggtaatttaaagc 179171
>emb|BX936363.13| Zebrafish DNA sequence from clone CH211-112P19 in linkage group 11, complete sequence Length = 184849 Score = 42.1 bits (21), Expect = 0.64 Identities = 23/24 (95%) Strand = Plus / Minus Query: 74 aaaacaaaaggtntcaaataaatg 97 |||||||||||| ||||||||||| Sbjct: 25202 aaaacaaaaggtttcaaataaatg 25179
>emb|CR628365.6| Zebrafish DNA sequence from clone CH211-137O16 in linkage group 11, complete sequence Length = 191036 Score = 42.1 bits (21), Expect = 0.64 Identities = 23/24 (95%) Strand = Plus / Minus Query: 74 aaaacaaaaggtntcaaataaatg 97 |||||||||||| ||||||||||| Sbjct: 40972 aaaacaaaaggtttcaaataaatg 40949
>gb|AC153981.5| Mus musculus 10 BAC RP24-112H16 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 177129 Score = 42.1 bits (21), Expect = 0.64 Identities = 21/21 (100%) Strand = Plus / Plus Query: 19 aatatgatggtaatttaaagc 39 ||||||||||||||||||||| Sbjct: 26554 aatatgatggtaatttaaagc 26574
>gb|AC102514.13| Mus musculus chromosome 7, clone RP24-419H14, complete sequence Length = 140911 Score = 40.1 bits (20), Expect = 2.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 174 ttcttagtaatagaaaggaagaaa 197 ||||||||||||||||| |||||| Sbjct: 137453 ttcttagtaatagaaagaaagaaa 137430
>gb|AC011229.2| Homo sapiens BAC clone CTD-2004K7 from 7, complete sequence Length = 105040 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 tgtgaagaaaaacaaaaggt 85 |||||||||||||||||||| Sbjct: 85189 tgtgaagaaaaacaaaaggt 85208
>emb|AL139379.14| Human DNA sequence from clone RP11-358P11 on chromosome 13 Contains a CpG island, complete sequence Length = 166237 Score = 40.1 bits (20), Expect = 2.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 168 aaagcattcttagtaatagaaagg 191 |||||||||||| ||||||||||| Sbjct: 37634 aaagcattcttaataatagaaagg 37657
>gb|AC132810.2| Homo sapiens chromosome 3 clone RP11-134J14, complete sequence Length = 146274 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 ttcctgtgaagaaaaacaaa 81 |||||||||||||||||||| Sbjct: 40356 ttcctgtgaagaaaaacaaa 40337
>gb|AC162877.2| Mus musculus chromosome 7, clone RP24-211E6, complete sequence Length = 158727 Score = 40.1 bits (20), Expect = 2.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 174 ttcttagtaatagaaaggaagaaa 197 ||||||||||||||||| |||||| Sbjct: 103210 ttcttagtaatagaaagaaagaaa 103233
>gb|AC022796.5| Homo sapiens chromosome 11, clone RP11-277K23, complete sequence Length = 115454 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 aatatgatggtaatttaaag 38 |||||||||||||||||||| Sbjct: 75695 aatatgatggtaatttaaag 75676
>gb|AC034154.6| Homo sapiens BAC clone RP11-242D9 from 4, complete sequence Length = 210563 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 taatagaaaggaagaaacaa 200 |||||||||||||||||||| Sbjct: 12377 taatagaaaggaagaaacaa 12358
>gb|AC154357.2| Mus musculus BAC clone RP23-192E11 from chromosome 9, complete sequence Length = 195151 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 aatttaaagcttgtgatata 49 |||||||||||||||||||| Sbjct: 40121 aatttaaagcttgtgatata 40140
>gb|AC147975.3| Pan troglodytes BAC clone CH251-510J15 from chromosome 7, complete sequence Length = 258316 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 tgtgaagaaaaacaaaaggt 85 |||||||||||||||||||| Sbjct: 20645 tgtgaagaaaaacaaaaggt 20626
>dbj|D43747.2| Homo sapiens gene for voltage-dependent calcium channel alpha1 subunit, CACN4, complete cds Length = 29472 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 ttcctgtgaagaaaaacaaa 81 |||||||||||||||||||| Sbjct: 1553 ttcctgtgaagaaaaacaaa 1534
>gb|AC011700.5|AC011700 Homo sapiens Chromosome 1 BAC RP11-478J18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 154732 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 179 agtaatagaaaggaagaaac 198 |||||||||||||||||||| Sbjct: 99108 agtaatagaaaggaagaaac 99127 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,314,577 Number of Sequences: 3902068 Number of extensions: 2314577 Number of successful extensions: 214024 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 213949 Number of HSP's gapped (non-prelim): 75 length of query: 201 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 179 effective length of database: 17,147,199,772 effective search space: 3069348759188 effective search space used: 3069348759188 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)