ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags4k04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1I17RA_HUMAN (Q96F46) Interleukin-17 receptor A precursor (IL-17 ... 33 0.61
2PININ_MOUSE (O35691) Pinin 30 6.8

>I17RA_HUMAN (Q96F46) Interleukin-17 receptor A precursor (IL-17 receptor)|
          Length = 866

 Score = 33.5 bits (75), Expect = 0.61
 Identities = 12/29 (41%), Positives = 22/29 (75%)
 Frame = +2

Query: 329 WDDCANVANPDDEESHRLEEKVYEEIVLP 415
           W +C N+ + DD+++  L+E+V+EE +LP
Sbjct: 584 WFECENLYSADDQDAPSLDEEVFEEPLLP 612



to top

>PININ_MOUSE (O35691) Pinin|
          Length = 725

 Score = 30.0 bits (66), Expect = 6.8
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = -1

Query: 319 LKERRDHALCSSQFPEKSAKD*LAVHSQFKSKD 221
           L ER+D  L S + PE S +  L VHS+ KSK+
Sbjct: 532 LPERKDFPLESIKLPEVSVEPVLTVHSENKSKN 564


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,269,522
Number of Sequences: 219361
Number of extensions: 2001625
Number of successful extensions: 5027
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5024
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6712189044
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top