ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags4k02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK102436.1| Oryza sativa (japonica cultivar-group) cDNA clon... 287 3e-74
2gb|BT018028.1| Zea mays clone EL01N0529H05.c mRNA sequence 174 3e-40
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 139 1e-29
4dbj|AP004680.3| Oryza sativa (japonica cultivar-group) genomic D... 139 1e-29
5gb|AY103770.1| Zea mays PCO100327 mRNA sequence 111 3e-21
6gb|AY107063.1| Zea mays PCO100324 mRNA sequence 103 8e-19
7gb|BT017666.1| Zea mays clone EL01N0441F03.c mRNA sequence 98 5e-17
8gb|AY111471.1| Zea mays CL42025_1 mRNA sequence 64 7e-07
9gb|AC108762.2| Oryza sativa (japonica cultivar-group) chromosome... 50 0.011
10dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.011
11dbj|AP004646.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.011
12dbj|AP005440.2| Oryza sativa (japonica cultivar-group) genomic D... 50 0.011
13dbj|AK073641.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.011
14dbj|AK063958.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.011
15ref|XM_480400.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.042
16emb|BX883042.1| Rattus norvegicus chromosome 20, major histocomp... 46 0.17
17dbj|AK062287.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.66
18ref|NM_000436.2| Homo sapiens 3-oxoacid CoA transferase 1 (OXCT1... 42 2.6
19gb|AC136221.2| Oryza sativa (japonica cultivar-group) chromosome... 42 2.6
20gb|AY591712.1| Mus musculus clone IgKVk33-84 immunoglobulin kapp... 42 2.6
21gb|AC118710.7| Mus musculus chromosome 15, clone RP24-121C9, com... 42 2.6
22gb|BC009001.1| Homo sapiens 3-oxoacid CoA transferase 1, mRNA (c... 42 2.6
23emb|CR860738.1| Pongo pygmaeus mRNA; cDNA DKFZp459B1627 (from cl... 42 2.6
24dbj|AB029576.2| Homo sapiens OXCT gene for succinyl-CoA:3-ketoac... 42 2.6
25dbj|AK125115.1| Homo sapiens cDNA FLJ43125 fis, clone CTONG3004397 42 2.6
26emb|CR611841.1| full-length cDNA clone CS0DL007YO17 of B cells (... 42 2.6
27gb|AC008817.8| Homo sapiens chromosome 5 clone CTD-2122P11, comp... 42 2.6
28dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.6
29gb|AC087902.43| Mus musculus strain C57BL/6J chromosome 15 clone... 42 2.6
30gb|AC011235.4| Homo sapiens BAC clone RP11-295A19 from 2, comple... 42 2.6
31gb|AC153614.5| Mus musculus 6 BAC RP23-344N8 (Roswell Park Cance... 42 2.6
32gb|U62961.1|HSU62961 Human succinyl CoA:3-oxoacid CoA transferas... 42 2.6

>dbj|AK102436.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033093J18, full
           insert sequence
          Length = 1094

 Score =  287 bits (145), Expect = 3e-74
 Identities = 429/519 (82%), Gaps = 6/519 (1%)
 Strand = Plus / Minus

                                                                       
Query: 233 tcttccacctccgtaaagtttttgggataagtgtatgttggatataaggtcttcagaatg 292
           |||||||| |||  |||||||||||||||||| || ||||||||||||||||| | ||||
Sbjct: 879 tcttccacatccacaaagtttttgggataagtataagttggatataaggtctttaaaatg 820

                                                                       
Query: 293 tttatgacatcagaaacttttattcgtactggactgcagatgtaccgtccagatgcctct 352
           ||||| | |||||| ||| ||||| |  |||  ||||||||||| ||||| |||||   |
Sbjct: 819 tttatcatatcagagactcttattggagctgagctgcagatgtatcgtccggatgc---t 763

                                                                       
Query: 353 ggattttcatatgccagaagaagagcatcggcaacatcacggacatccactagattccag 412
           ||||||||||| |||| ||| ||||||| |||||||||||| |||||||||| ||||| |
Sbjct: 762 ggattttcatacgccaaaaggagagcattggcaacatcacgaacatccactacattccgg 703

                                                                       
Query: 413 aatctattttctacagtctcatgttctcctttgagatatttgaggagaattttactgctc 472
           | ||||||||| ||||| ||| | |||||||||| ||| || | ||||| |||||| |||
Sbjct: 702 agtctattttcgacagtgtcacgatctcctttgaaatagttaatgagaactttactactc 643

                                                                       
Query: 473 gcattcactgttggctgcatcaaggggccaagtaccaatgatggtagaatagctacaaca 532
           || || ||||| |  ||||| ||||| ||||  |||||||||||   ||||| |||||  
Sbjct: 642 gcgtttactgtagattgcattaagggtccaatcaccaatgatgggcaaatagttacaatg 583

                                                                       
Query: 533 tccatcccagttttcgctgcataagcaaaagcctcacgctctgcgcgcgttttggaaagc 592
           |||| ||||||||| |||||||||||||||||||||||||||||   |||||| ||||| 
Sbjct: 582 tccagcccagtttttgctgcataagcaaaagcctcacgctctgccaccgttttcgaaagg 523

                                                                       
Query: 593 aaataccaatcctcaccctttctgcacagatcctcgtctgaccagctgtctttcagtaaa 652
            |||||||||||| |  ||||||||| |  ||||| |||||||| ||||||| |||| ||
Sbjct: 522 taataccaatcctgattctttctgcataattcctcatctgaccaactgtctt-cagtgaa 464

                                                                       
Query: 653 tactttgcccttgggccagttagggattgttgaacacagcagcacatgaagacactatga 712
             | ||  |||| ||||||||||| |||  ||||||| ||||||   |||||||| ||||
Sbjct: 463 agccttatcctttggccagttagg-attactgaacacggcagcaatggaagacaccatga 405

                                                  
Query: 713 caactcgcttaacttttggcctcgttgcaagccttcaac 751
           ||||||||||||||||| ||||| | ||| |||||||||
Sbjct: 404 caactcgcttaactttt-gcctcatggcaggccttcaac 367



 Score = 77.8 bits (39), Expect = 5e-11
 Identities = 81/95 (85%)
 Strand = Plus / Minus

                                                                       
Query: 125 aggatgccagatgctttgtaggattcgacactgtctccgagggtcttctctacaggcctg 184
           ||||||||| |||||||||||||||| || ||||| | |||||| | ||| | |||||||
Sbjct: 987 aggatgccaaatgctttgtaggattccacgctgtcccggagggtttcctcaataggcctg 928

                                              
Query: 185 aaggtccaccctagcttctgaagtttctcagaact 219
           ||  |||| || |||||||||||||||||| ||||
Sbjct: 927 aaactccagccaagcttctgaagtttctcaaaact 893



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>gb|BT018028.1| Zea mays clone EL01N0529H05.c mRNA sequence
          Length = 1336

 Score =  174 bits (88), Expect = 3e-40
 Identities = 289/356 (81%)
 Strand = Plus / Minus

                                                                       
Query: 251 tttttgggataagtgtatgttggatataaggtcttcagaatgtttatgacatcagaaact 310
           ||||||||||||| ||| | |||||| ||||||||||| |||||||| | ||||| |  |
Sbjct: 877 tttttgggataagggtaagatggatacaaggtcttcagtatgtttatcatatcagcactt 818

                                                                       
Query: 311 tttattcgtactggactgcagatgtaccgtccagatgcctctggattttcatatgccaga 370
           ||||||     || |||||||||||| |||||||| || ||||| ||||| || ||||||
Sbjct: 817 tttattgcatgtgaactgcagatgtatcgtccagacgcttctggcttttcgtaagccaga 758

                                                                       
Query: 371 agaagagcatcggcaacatcacggacatccactagattccagaatctattttctacagtc 430
           |||||||| || ||||||||||| |||||||| | ||| | || | | ||||| ||||||
Sbjct: 757 agaagagcgtcagcaacatcacgaacatccaccatatttctgagtatgttttcaacagtc 698

                                                                       
Query: 431 tcatgttctcctttgagatatttgaggagaattttactgctcgcattcactgttggctgc 490
           ||  | |||||| ||| |||||| ||||  ||||| ||||||| ||| ||||| ||||||
Sbjct: 697 tcgcgatctcctgtgaaatatttaaggatgattttgctgctcgaatttactgtaggctgc 638

                                                                       
Query: 491 atcaaggggccaagtaccaatgatggtagaatagctacaacatccatcccagttttcgct 550
           |||||||| |||| ||| || || ||   ||||| ||||||||||| ||| ||||| |||
Sbjct: 637 atcaagggtccaaatactaacgacgggcaaatagttacaacatccagccctgtttttgct 578

                                                                   
Query: 551 gcataagcaaaagcctcacgctctgcgcgcgttttggaaagcaaataccaatcctc 606
           |||||| |||||||||| || || ||  | || |||||||  ||||||||||||||
Sbjct: 577 gcataaacaaaagcctctcgttccgccagtgtcttggaaacaaaataccaatcctc 522



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 89/106 (83%)
 Strand = Plus / Minus

                                                                        
Query: 111  tggatgctcagttcaggatgccagatgctttgtaggattcgacactgtctccgagggtct 170
            |||||| ||| |||||||||||| ||||||||||  |||| ||| |||| | |||||  |
Sbjct: 1017 tggatgttcaattcaggatgccaaatgctttgtacaattcaacagtgtcgcggagggatt 958

                                                          
Query: 171  tctctacaggcctgaaggtccaccctagcttctgaagtttctcaga 216
             ||||| |||| ||||| ||||||| |||||||| |||||||||||
Sbjct: 957  cctctataggcttgaagctccaccccagcttctgcagtttctcaga 912



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  139 bits (70), Expect = 1e-29
 Identities = 162/192 (84%), Gaps = 3/192 (1%)
 Strand = Plus / Plus

                                                                            
Query: 251      tttttgggataagtgtatgttggatataaggtcttcagaatgtttatgacatcagaaact 310
                |||||||||||||| || ||||||||||||||||| | ||||||||| | |||||| |||
Sbjct: 24690622 tttttgggataagtataagttggatataaggtctttaaaatgtttatcatatcagagact 24690681

                                                                            
Query: 311      tttattcgtactggactgcagatgtaccgtccagatgcctctggattttcatatgccaga 370
                 ||||| |  |||  ||||||||||| ||||| |||||   |||||||||||| |||| |
Sbjct: 24690682 cttattggagctgagctgcagatgtatcgtccggatgc---tggattttcatacgccaaa 24690738

                                                                            
Query: 371      agaagagcatcggcaacatcacggacatccactagattccagaatctattttctacagtc 430
                || ||||||| |||||||||||| |||||||||| ||||| || ||||||||| ||||| 
Sbjct: 24690739 aggagagcattggcaacatcacgaacatccactacattccggagtctattttcgacagtg 24690798

                            
Query: 431      tcatgttctcct 442
                ||| | ||||||
Sbjct: 24690799 tcacgatctcct 24690810



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 137/166 (82%)
 Strand = Plus / Plus

                                                                            
Query: 440      cctttgagatatttgaggagaattttactgctcgcattcactgttggctgcatcaagggg 499
                ||||||| ||| || | ||||| |||||| ||||| || ||||| |  ||||| ||||| 
Sbjct: 24691059 cctttgaaatagttaatgagaactttactactcgcgtttactgtagattgcattaagggt 24691118

                                                                            
Query: 500      ccaagtaccaatgatggtagaatagctacaacatccatcccagttttcgctgcataagca 559
                ||||  |||||||||||   ||||| |||||  |||| ||||||||| ||||||||||||
Sbjct: 24691119 ccaatcaccaatgatgggcaaatagttacaatgtccagcccagtttttgctgcataagca 24691178

                                                              
Query: 560      aaagcctcacgctctgcgcgcgttttggaaagcaaataccaatcct 605
                |||||||||||||||||   |||||| |||||  ||||||||||||
Sbjct: 24691179 aaagcctcacgctctgccaccgttttcgaaaggtaataccaatcct 24691224



 Score = 77.8 bits (39), Expect = 5e-11
 Identities = 81/95 (85%)
 Strand = Plus / Plus

                                                                            
Query: 125      aggatgccagatgctttgtaggattcgacactgtctccgagggtcttctctacaggcctg 184
                ||||||||| |||||||||||||||| || ||||| | |||||| | ||| | |||||||
Sbjct: 24690122 aggatgccaaatgctttgtaggattccacgctgtcccggagggtttcctcaataggcctg 24690181

                                                   
Query: 185      aaggtccaccctagcttctgaagtttctcagaact 219
                ||  |||| || |||||||||||||||||| ||||
Sbjct: 24690182 aaactccagccaagcttctgaagtttctcaaaact 24690216



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 78/91 (85%), Gaps = 2/91 (2%)
 Strand = Plus / Plus

                                                                            
Query: 661      ccttgggccagttagggattgttgaacacagcagcacatgaagacactatgacaactcgc 720
                |||| ||||||||||| |||  ||||||| ||||||   |||||||| ||||||||||||
Sbjct: 24691559 cctttggccagttagg-attactgaacacggcagcaatggaagacaccatgacaactcgc 24691617

                                               
Query: 721      ttaacttttggcctcgttgcaagccttcaac 751
                ||||||||| ||||| | ||| |||||||||
Sbjct: 24691618 ttaactttt-gcctcatggcaggccttcaac 24691647



 Score = 50.1 bits (25), Expect = 0.011
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                                 
Query: 370      aagaagagcatcggcaacatcacggacatccac 402
                ||||||||||||||||||||| | |||||||||
Sbjct: 24704056 aagaagagcatcggcaacatccctgacatccac 24704088



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>dbj|AP004680.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0029G06
          Length = 169711

 Score =  139 bits (70), Expect = 1e-29
 Identities = 162/192 (84%), Gaps = 3/192 (1%)
 Strand = Plus / Plus

                                                                         
Query: 251   tttttgggataagtgtatgttggatataaggtcttcagaatgtttatgacatcagaaact 310
             |||||||||||||| || ||||||||||||||||| | ||||||||| | |||||| |||
Sbjct: 24303 tttttgggataagtataagttggatataaggtctttaaaatgtttatcatatcagagact 24362

                                                                         
Query: 311   tttattcgtactggactgcagatgtaccgtccagatgcctctggattttcatatgccaga 370
              ||||| |  |||  ||||||||||| ||||| |||||   |||||||||||| |||| |
Sbjct: 24363 cttattggagctgagctgcagatgtatcgtccggatgc---tggattttcatacgccaaa 24419

                                                                         
Query: 371   agaagagcatcggcaacatcacggacatccactagattccagaatctattttctacagtc 430
             || ||||||| |||||||||||| |||||||||| ||||| || ||||||||| ||||| 
Sbjct: 24420 aggagagcattggcaacatcacgaacatccactacattccggagtctattttcgacagtg 24479

                         
Query: 431   tcatgttctcct 442
             ||| | ||||||
Sbjct: 24480 tcacgatctcct 24491



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 137/166 (82%)
 Strand = Plus / Plus

                                                                         
Query: 440   cctttgagatatttgaggagaattttactgctcgcattcactgttggctgcatcaagggg 499
             ||||||| ||| || | ||||| |||||| ||||| || ||||| |  ||||| ||||| 
Sbjct: 24740 cctttgaaatagttaatgagaactttactactcgcgtttactgtagattgcattaagggt 24799

                                                                         
Query: 500   ccaagtaccaatgatggtagaatagctacaacatccatcccagttttcgctgcataagca 559
             ||||  |||||||||||   ||||| |||||  |||| ||||||||| ||||||||||||
Sbjct: 24800 ccaatcaccaatgatgggcaaatagttacaatgtccagcccagtttttgctgcataagca 24859

                                                           
Query: 560   aaagcctcacgctctgcgcgcgttttggaaagcaaataccaatcct 605
             |||||||||||||||||   |||||| |||||  ||||||||||||
Sbjct: 24860 aaagcctcacgctctgccaccgttttcgaaaggtaataccaatcct 24905



 Score = 77.8 bits (39), Expect = 5e-11
 Identities = 81/95 (85%)
 Strand = Plus / Plus

                                                                         
Query: 125   aggatgccagatgctttgtaggattcgacactgtctccgagggtcttctctacaggcctg 184
             ||||||||| |||||||||||||||| || ||||| | |||||| | ||| | |||||||
Sbjct: 23803 aggatgccaaatgctttgtaggattccacgctgtcccggagggtttcctcaataggcctg 23862

                                                
Query: 185   aaggtccaccctagcttctgaagtttctcagaact 219
             ||  |||| || |||||||||||||||||| ||||
Sbjct: 23863 aaactccagccaagcttctgaagtttctcaaaact 23897



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 78/91 (85%), Gaps = 2/91 (2%)
 Strand = Plus / Plus

                                                                         
Query: 661   ccttgggccagttagggattgttgaacacagcagcacatgaagacactatgacaactcgc 720
             |||| ||||||||||| |||  ||||||| ||||||   |||||||| ||||||||||||
Sbjct: 25240 cctttggccagttagg-attactgaacacggcagcaatggaagacaccatgacaactcgc 25298

                                            
Query: 721   ttaacttttggcctcgttgcaagccttcaac 751
             ||||||||| ||||| | ||| |||||||||
Sbjct: 25299 ttaactttt-gcctcatggcaggccttcaac 25328



 Score = 50.1 bits (25), Expect = 0.011
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                              
Query: 370   aagaagagcatcggcaacatcacggacatccac 402
             ||||||||||||||||||||| | |||||||||
Sbjct: 37737 aagaagagcatcggcaacatccctgacatccac 37769



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>gb|AY103770.1| Zea mays PCO100327 mRNA sequence
          Length = 1333

 Score =  111 bits (56), Expect = 3e-21
 Identities = 310/394 (78%), Gaps = 3/394 (0%)
 Strand = Plus / Minus

                                                                       
Query: 251 tttttgggataagtgtatgttggatataaggtcttcagaatgtttatgacatcagaaact 310
           ||||||||||||| ||| |  ||||| | ||||||||| |||||||| | |||||||| |
Sbjct: 948 tttttgggataagggtaagacggatacatggtcttcagtatgtttatcatatcagaaatt 889

                                                                       
Query: 311 tttattcgtactggactgcagatgtaccgtccagatgcctctggattttcatatgccaga 370
           ||||||     || |||||||||||| |||||||| || ||||| ||||| || | ||||
Sbjct: 888 tttattgcatgtgaactgcagatgtatcgtccagacgcttctggcttttcgtaagtcaga 829

                                                                       
Query: 371 agaagagcatcggcaacatcacggacatccactagattccagaatctattttctacagtc 430
           ||||||||||| ||||||||||| | |||||| | ||| | || |  |||||| ||||||
Sbjct: 828 agaagagcatcagcaacatcacgaatatccaccatattactgagtacattttcaacagtc 769

                                                                       
Query: 431 tcatgttctcctttgagatatttgaggagaattttactgctcgcattcactgttggctgc 490
           ||  | |   |||||| |||||| ||||  ||||  ||||||  ||| ||||| ||||||
Sbjct: 768 tcgagat---ctttgaaatatttaaggatcatttcgctgctcaaatttactgtaggctgc 712

                                                                       
Query: 491 atcaaggggccaagtaccaatgatggtagaatagctacaacatccatcccagttttcgct 550
           |||||||| |||| ||| ||||| ||   || || |||||| |||| ||| ||||| |||
Sbjct: 711 atcaagggtccaaatactaatgacggacaaacagttacaacgtccagccctgtttttgct 652

                                                                       
Query: 551 gcataagcaaaagcctcacgctctgcgcgcgttttggaaagcaaataccaatcctcaccc 610
           ||| |||||| ||| || || || |   | ||||||||||  ||||||||||||||   |
Sbjct: 651 gcaaaagcaagagcttctcgttccgacagtgttttggaaactaaataccaatcctccttc 592

                                             
Query: 611 tttctgcacagatcctcgtctgaccagctgtctt 644
           || |||||   |||||| |||||||||| |||||
Sbjct: 591 ttcctgcagtaatcctcatctgaccagcagtctt 558



 Score =  103 bits (52), Expect = 8e-19
 Identities = 97/112 (86%)
 Strand = Plus / Minus

                                                                        
Query: 105  cctagttggatgctcagttcaggatgccagatgctttgtaggattcgacactgtctccga 164
            |||||||||||| ||| |||||||||||| |||| ||||||||||| ||| |||| | ||
Sbjct: 1094 cctagttggatgttcaattcaggatgccaaatgccttgtaggattcaacagtgtcacgga 1035

                                                                
Query: 165  gggtcttctctacaggcctgaaggtccaccctagcttctgaagtttctcaga 216
            |||  | ||||| |||| ||||||||||||| |||||||| |||||||||||
Sbjct: 1034 gggattcctctataggcttgaaggtccaccccagcttctgcagtttctcaga 983



 Score = 44.1 bits (22), Expect = 0.66
 Identities = 53/62 (85%), Gaps = 1/62 (1%)
 Strand = Plus / Minus

                                                                       
Query: 686 acacagcagcacatgaagacactatgacaactcgcttaacttttggcctcgttgcaagcc 745
           |||||||  ||||||||||||| |  ||||||||| |||||||| ||||| | |||||||
Sbjct: 519 acacagctccacatgaagacaccaccacaactcgcctaactttt-gcctcatagcaagcc 461

             
Query: 746 tt 747
           ||
Sbjct: 460 tt 459



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>gb|AY107063.1| Zea mays PCO100324 mRNA sequence
          Length = 999

 Score =  103 bits (52), Expect = 8e-19
 Identities = 251/312 (80%), Gaps = 4/312 (1%)
 Strand = Plus / Minus

                                                                       
Query: 326 ctgcagatgtaccgtccagatgcctctggattttcatatgccagaagaagagcatcggca 385
           ||||||||||| ||||||||||| ||| ||||||| || || |||| | ||| ||| |||
Sbjct: 933 ctgcagatgtatcgtccagatgcttcttgattttcgtaagc-agaacaggag-atcagca 876

                                                                       
Query: 386 acatcacggacatccactagattccagaatctattttctacagtctcatgttctcctttg 445
           |||||||| |||||||| | ||| | || ||| ||||| ||||||||| | |||||||||
Sbjct: 875 acatcacgaacatccac-atatttctgagtctgttttcaacagtctcacgatctcctttg 817

                                                                       
Query: 446 agatatttgaggagaattttactgctcgcattcactgttggctgcatcaaggggccaagt 505
           | ||| || ||||| | ||||||| ||| ||| ||| | | |||||||||||| |||| |
Sbjct: 816 aaataattaaggagtactttactgttcgtatttactatagactgcatcaagggcccaaat 757

                                                                       
Query: 506 acc-aatgatggtagaatagctacaacatccatcccagttttcgctgcataagcaaaagc 564
           ||| || || ||   ||||| |||||||| || ||| | ||| |||||| ||||||||||
Sbjct: 756 acccaaggacgggcaaatagttacaacattcagccccgattttgctgcaaaagcaaaagc 697

                                                                       
Query: 565 ctcacgctctgcgcgcgttttggaaagcaaataccaatcctcaccctttctgcacagatc 624
           |||||| || |   | ||||| |||||  ||||||||||||||  ||| |||||   |||
Sbjct: 696 ctcacgttcggatagagttttagaaagataataccaatcctcattcttcctgcaataatc 637

                       
Query: 625 ctcgtctgacca 636
           ||||||||||||
Sbjct: 636 ctcgtctgacca 625



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>gb|BT017666.1| Zea mays clone EL01N0441F03.c mRNA sequence
          Length = 869

 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 210/263 (79%), Gaps = 3/263 (1%)
 Strand = Plus / Minus

                                                                       
Query: 251 tttttgggataagtgtatgttggatataaggtcttcagaatgtttatgacatcagaaact 310
           ||||||||||||| ||| |  ||||| | ||||||||| |||||||| | |||||||| |
Sbjct: 468 tttttgggataagggtaagacggatacatggtcttcagtatgtttatcatatcagaaatt 409

                                                                       
Query: 311 tttattcgtactggactgcagatgtaccgtccagatgcctctggattttcatatgccaga 370
           ||||||     || |||||||||||| |||||||| || ||||| ||||| || | ||||
Sbjct: 408 tttattgcatgtgaactgcagatgtatcgtccagacgcttctggcttttcgtaagtcaga 349

                                                                       
Query: 371 agaagagcatcggcaacatcacggacatccactagattccagaatctattttctacagtc 430
           ||||||||||| ||||||||||| | |||||| | ||| | || |  |||||| ||||||
Sbjct: 348 agaagagcatcagcaacatcacgaatatccaccatattactgagtacattttcaacagtc 289

                                                                       
Query: 431 tcatgttctcctttgagatatttgaggagaattttactgctcgcattcactgttggctgc 490
           ||  | |   |||||| |||||| ||||  ||||  ||||||  ||| ||||| ||||||
Sbjct: 288 tcgagat---ctttgaaatatttaaggatcatttcgctgctcaaatttactgtaggctgc 232

                                  
Query: 491 atcaaggggccaagtaccaatga 513
           |||||||| |||| ||| |||||
Sbjct: 231 atcaagggtccaaatactaatga 209



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 94/112 (83%)
 Strand = Plus / Minus

                                                                       
Query: 105 cctagttggatgctcagttcaggatgccagatgctttgtaggattcgacactgtctccga 164
           |||||||||||| ||| |||||||||||| |||| ||||||||||| ||| || | | ||
Sbjct: 614 cctagttggatgttcaattcaggatgccaaatgccttgtaggattcaacagtggcacgga 555

                                                               
Query: 165 gggtcttctctacaggcctgaaggtccaccctagcttctgaagtttctcaga 216
           |||  | ||||| |||  |||||| |||||| |||||||| |||||||||||
Sbjct: 554 gggattcctctatagggttgaagggccaccccagcttctgcagtttctcaga 503



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>gb|AY111471.1| Zea mays CL42025_1 mRNA sequence
          Length = 830

 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 89/108 (82%)
 Strand = Plus / Plus

                                                                       
Query: 500 ccaagtaccaatgatggtagaatagctacaacatccatcccagttttcgctgcataagca 559
           |||| ||||||||||||   ||||| |||||  || | ||||||||| ||||||||||||
Sbjct: 589 ccaattaccaatgatgggcaaatagttacaatgtctagcccagttttggctgcataagca 648

                                                           
Query: 560 aaagcctcacgctctgcgcgcgttttggaaagcaaataccaatcctca 607
           ||||||||| | |||||    ||||| ||||| |||||||| ||||||
Sbjct: 649 aaagcctcatgttctgccaatgttttagaaaggaaataccattcctca 696



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 115/143 (80%)
 Strand = Plus / Plus

                                                                       
Query: 260 taagtgtatgttggatataaggtcttcagaatgtttatgacatcagaaacttttattcgt 319
           ||||||||||||||||||  ||||||||| |||||||  | |||||| ||| |||||  |
Sbjct: 349 taagtgtatgttggatattcggtcttcagtatgtttacaatatcagagactcttattgct 408

                                                                       
Query: 320 actggactgcagatgtaccgtccagatgcctctggattttcatatgccagaagaagagca 379
             || |||||||| ||| ||||| |||||||   ||||||| || ||||  ||||| |||
Sbjct: 409 ggtgaactgcagaggtatcgtcctgatgcctgcagattttcgtaagccaacagaagggca 468

                                  
Query: 380 tcggcaacatcacggacatccac 402
            | || |||||||| ||||||||
Sbjct: 469 ccagcgacatcacgaacatccac 491



 Score = 50.1 bits (25), Expect = 0.011
 Identities = 79/97 (81%)
 Strand = Plus / Plus

                                                                       
Query: 116 gctcagttcaggatgccagatgctttgtaggattcgacactgtctccgagggtcttctct 175
           |||||||||||||||||    ||| ||||| ||||||  ||||||| |||||| | ||| 
Sbjct: 205 gctcagttcaggatgcccatagctctgtagcattcgatgctgtctcggagggtgtcctcc 264

                                                
Query: 176 acaggcctgaaggtccaccctagcttctgaagtttct 212
           |  |||||  ||||||||||||||||| |||| ||||
Sbjct: 265 atgggcctagaggtccaccctagcttccgaagcttct 301



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>gb|AC108762.2| Oryza sativa (japonica cultivar-group) chromosome 9 clone
             OSJNBb0052C07, complete sequence
          Length = 154528

 Score = 50.1 bits (25), Expect = 0.011
 Identities = 41/45 (91%), Gaps = 1/45 (2%)
 Strand = Plus / Minus

                                                          
Query: 358   ttcatatgccagaagaagagcatcggcaacatcacggacatccac 402
             ||||||||| ||||| |||||||| || |||||||||||||||||
Sbjct: 24150 ttcatatgc-agaagtagagcatcagcgacatcacggacatccac 24107



 Score = 44.1 bits (22), Expect = 0.66
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                   
Query: 362   tatgccagaagaagagcatcggcaacatcacggacatc 399
             ||||| ||||| | |||||| |||||||||||||||||
Sbjct: 19433 tatgctagaagtaaagcatcagcaacatcacggacatc 19396



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 50.1 bits (25), Expect = 0.011
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                        
Query: 179     ggcctgaaggtccaccctagcttctgaagtttctcagaact 219
               |||||||||||||| |||||||||| ||| ||||| |||||
Sbjct: 4891701 ggcctgaaggtccaacctagcttctcaagcttctctgaact 4891741



 Score = 48.1 bits (24), Expect = 0.042
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                           
Query: 533     tccatcccagttttcgctgcataagcaaaagcctcacgctctgc 576
               |||||||||||||| || || ||  |||||||||||||||||||
Sbjct: 4892620 tccatcccagtttttgccgcgtactcaaaagcctcacgctctgc 4892663



 Score = 42.1 bits (21), Expect = 2.6
 Identities = 63/77 (81%)
 Strand = Plus / Plus

                                                                           
Query: 325     actgcagatgtaccgtccagatgcctctggattttcatatgccagaagaagagcatcggc 384
               |||||| ||||| ||| ||||| || |||  ||||||||  | | ||||| |||||||||
Sbjct: 4891960 actgcatatgtatcgttcagatccccctgagttttcatagactaaaagaatagcatcggc 4892019

                                
Query: 385     aacatcacggacatcca 401
               |||||| || |||||||
Sbjct: 4892020 aacatcgcgaacatcca 4892036



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>dbj|AP004646.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1122_A12
          Length = 149011

 Score = 50.1 bits (25), Expect = 0.011
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                      
Query: 179   ggcctgaaggtccaccctagcttctgaagtttctcagaact 219
             |||||||||||||| |||||||||| ||| ||||| |||||
Sbjct: 50955 ggcctgaaggtccaacctagcttctcaagcttctctgaact 50995



 Score = 48.1 bits (24), Expect = 0.042
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                         
Query: 533   tccatcccagttttcgctgcataagcaaaagcctcacgctctgc 576
             |||||||||||||| || || ||  |||||||||||||||||||
Sbjct: 51874 tccatcccagtttttgccgcgtactcaaaagcctcacgctctgc 51917



 Score = 42.1 bits (21), Expect = 2.6
 Identities = 63/77 (81%)
 Strand = Plus / Plus

                                                                         
Query: 325   actgcagatgtaccgtccagatgcctctggattttcatatgccagaagaagagcatcggc 384
             |||||| ||||| ||| ||||| || |||  ||||||||  | | ||||| |||||||||
Sbjct: 51214 actgcatatgtatcgttcagatccccctgagttttcatagactaaaagaatagcatcggc 51273

                              
Query: 385   aacatcacggacatcca 401
             |||||| || |||||||
Sbjct: 51274 aacatcgcgaacatcca 51290



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>dbj|AP005440.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0056D04
          Length = 158118

 Score = 50.1 bits (25), Expect = 0.011
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                      
Query: 179   ggcctgaaggtccaccctagcttctgaagtttctcagaact 219
             |||||||||||||| |||||||||| ||| ||||| |||||
Sbjct: 96495 ggcctgaaggtccaacctagcttctcaagcttctctgaact 96535



 Score = 48.1 bits (24), Expect = 0.042
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                         
Query: 533   tccatcccagttttcgctgcataagcaaaagcctcacgctctgc 576
             |||||||||||||| || || ||  |||||||||||||||||||
Sbjct: 97414 tccatcccagtttttgccgcgtactcaaaagcctcacgctctgc 97457



 Score = 42.1 bits (21), Expect = 2.6
 Identities = 63/77 (81%)
 Strand = Plus / Plus

                                                                         
Query: 325   actgcagatgtaccgtccagatgcctctggattttcatatgccagaagaagagcatcggc 384
             |||||| ||||| ||| ||||| || |||  ||||||||  | | ||||| |||||||||
Sbjct: 96754 actgcatatgtatcgttcagatccccctgagttttcatagactaaaagaatagcatcggc 96813

                              
Query: 385   aacatcacggacatcca 401
             |||||| || |||||||
Sbjct: 96814 aacatcgcgaacatcca 96830



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>dbj|AK073641.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033052J24, full
           insert sequence
          Length = 1232

 Score = 50.1 bits (25), Expect = 0.011
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                            
Query: 370 aagaagagcatcggcaacatcacggacatccac 402
           ||||||||||||||||||||| | |||||||||
Sbjct: 738 aagaagagcatcggcaacatccctgacatccac 706



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>dbj|AK063958.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-G03, full
            insert sequence
          Length = 1737

 Score = 50.1 bits (25), Expect = 0.011
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 370  aagaagagcatcggcaacatcacggacatccac 402
            ||||||||||||||||||||| | |||||||||
Sbjct: 1185 aagaagagcatcggcaacatccctgacatccac 1153



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>ref|XM_480400.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 690

 Score = 48.1 bits (24), Expect = 0.042
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                       
Query: 533 tccatcccagttttcgctgcataagcaaaagcctcacgctctgc 576
           |||||||||||||| || || ||  |||||||||||||||||||
Sbjct: 590 tccatcccagtttttgccgcgtactcaaaagcctcacgctctgc 547



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>emb|BX883042.1| Rattus norvegicus chromosome 20, major histocompatibility complex,
             assembled from 40 BACs, strain Brown Norway (BN/ssNHsd),
             RT1n haplotype; segment 1/11
          Length = 348780

 Score = 46.1 bits (23), Expect = 0.17
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 338   cgtccagatgcctctggattttc 360
             |||||||||||||||||||||||
Sbjct: 73547 cgtccagatgcctctggattttc 73525



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>dbj|AK062287.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-E03, full
           insert sequence
          Length = 1272

 Score = 44.1 bits (22), Expect = 0.66
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 362 tatgccagaagaagagcatcggcaacatcacggacatc 399
           ||||| ||||| | |||||| |||||||||||||||||
Sbjct: 808 tatgctagaagtaaagcatcagcaacatcacggacatc 771



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>ref|NM_000436.2| Homo sapiens 3-oxoacid CoA transferase 1 (OXCT1), nuclear gene
            encoding mitochondrial protein, mRNA
          Length = 3385

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 95   cattattttccctagttggat 115
            |||||||||||||||||||||
Sbjct: 2700 cattattttccctagttggat 2680



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>gb|AC136221.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0077J17,
              complete sequence
          Length = 141598

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 250    gtttttgggataagtgtatgttgga 274
              ||||||||||||||||||| |||||
Sbjct: 103824 gtttttgggataagtgtattttgga 103800



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>gb|AY591712.1| Mus musculus clone IgKVk33-84 immunoglobulin kappa-like gene, partial
            sequence
          Length = 3001

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 1    atgtttcttttatttncatgattc 24
            ||||||||||||||| ||||||||
Sbjct: 1081 atgtttcttttatttccatgattc 1058



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>gb|AC118710.7| Mus musculus chromosome 15, clone RP24-121C9, complete sequence
          Length = 175437

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 420   tttctacagtctcatgttctc 440
             |||||||||||||||||||||
Sbjct: 53599 tttctacagtctcatgttctc 53619



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>gb|BC009001.1| Homo sapiens 3-oxoacid CoA transferase 1, mRNA (cDNA clone MGC:17088
            IMAGE:4148643), complete cds
          Length = 3296

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 95   cattattttccctagttggat 115
            |||||||||||||||||||||
Sbjct: 2612 cattattttccctagttggat 2592



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>emb|CR860738.1| Pongo pygmaeus mRNA; cDNA DKFZp459B1627 (from clone DKFZp459B1627)
          Length = 3419

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 95   cattattttccctagttggat 115
            |||||||||||||||||||||
Sbjct: 2735 cattattttccctagttggat 2715



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>dbj|AB029576.2| Homo sapiens OXCT gene for succinyl-CoA:3-ketoacid CoA transferase,
            complete cds
          Length = 7694

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 95   cattattttccctagttggat 115
            |||||||||||||||||||||
Sbjct: 7029 cattattttccctagttggat 7009



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>dbj|AK125115.1| Homo sapiens cDNA FLJ43125 fis, clone CTONG3004397
          Length = 4133

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 95   cattattttccctagttggat 115
            |||||||||||||||||||||
Sbjct: 3464 cattattttccctagttggat 3444



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>emb|CR611841.1| full-length cDNA clone CS0DL007YO17 of B cells (Ramos cell line)
           Cot 25-normalized of Homo sapiens (human)
          Length = 1583

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 95  cattattttccctagttggat 115
           |||||||||||||||||||||
Sbjct: 948 cattattttccctagttggat 928



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>gb|AC008817.8| Homo sapiens chromosome 5 clone CTD-2122P11, complete sequence
          Length = 186185

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 95     cattattttccctagttggat 115
              |||||||||||||||||||||
Sbjct: 170725 cattattttccctagttggat 170745



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 250      gtttttgggataagtgtatgttgga 274
                ||||||||||||||||||| |||||
Sbjct: 16463387 gtttttgggataagtgtattttgga 16463363



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>gb|AC087902.43| Mus musculus strain C57BL/6J chromosome 15 clone rp23-343o3, complete
             sequence
          Length = 220173

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 420   tttctacagtctcatgttctc 440
             |||||||||||||||||||||
Sbjct: 32357 tttctacagtctcatgttctc 32337



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>gb|AC011235.4| Homo sapiens BAC clone RP11-295A19 from 2, complete sequence
          Length = 184042

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 200    ttctgaagtttctcagaactc 220
              |||||||||||||||||||||
Sbjct: 162359 ttctgaagtttctcagaactc 162379



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>gb|AC153614.5| Mus musculus 6 BAC RP23-344N8 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 205813

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 1      atgtttcttttatttncatgattc 24
              ||||||||||||||| ||||||||
Sbjct: 164738 atgtttcttttatttccatgattc 164761



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>gb|U62961.1|HSU62961 Human succinyl CoA:3-oxoacid CoA transferase precursor (OXCT) mRNA,
            complete cds
          Length = 3337

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 95   cattattttccctagttggat 115
            |||||||||||||||||||||
Sbjct: 2655 cattattttccctagttggat 2635


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,052,851
Number of Sequences: 3902068
Number of extensions: 7052851
Number of successful extensions: 134863
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 134631
Number of HSP's gapped (non-prelim): 221
length of query: 751
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 728
effective length of database: 17,143,297,704
effective search space: 12480320728512
effective search space used: 12480320728512
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
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