ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags4j11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_467289.1| Oryza sativa (japonica cultivar-group), mRNA 64 7e-07
2emb|AJ495787.1|OSA495787 Oryza sativa (japonica cultivar-group) ... 64 7e-07
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 64 7e-07
4dbj|AP005868.3| Oryza sativa (japonica cultivar-group) genomic D... 64 7e-07
5dbj|AP004778.3| Oryza sativa (japonica cultivar-group) genomic D... 64 7e-07
6dbj|AK066018.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 7e-07
7gb|AY104127.1| Zea mays PCO110287 mRNA sequence 64 7e-07
8gb|AY316746.1| Rhizobium sp. NGR234 megaplasmid 2 contig 2, comp... 42 2.4
9emb|AL139428.15| Human DNA sequence from clone RP5-977F20 on chr... 42 2.4
10gb|CP000249.1| Frankia sp. CcI3, complete genome 42 2.4
11gb|CP000057.1| Haemophilus influenzae strain 86-028NP, complete ... 40 9.5
12ref|XM_418180.1| PREDICTED: Gallus gallus similar to glycoprotei... 40 9.5
13emb|CR954257.1| Anopheles gambiae Pen-1 region; BAC clone 32F02 ... 40 9.5
14gb|AC116709.4| Mus musculus chromosome 1, clone RP23-91L14, comp... 40 9.5
15gb|AC145772.1| Pan troglodytes BAC clone RP43-14J20 from 7, comp... 40 9.5
16gb|AC164076.3| Mus musculus chromosome 1, clone RP24-287C18, com... 40 9.5
17gb|AC127789.4| Rattus norvegicus 1 BAC CH230-15M17 (Children's H... 40 9.5
18gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome 40 9.5
19gb|AF389113.1|AF389113 Rhizobium sp. NGR234, cosmid pXB826, comp... 40 9.5
20gb|AC093262.2| Homo sapiens chromosome 5 clone RP11-252F20, comp... 40 9.5
21dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete g... 40 9.5
22gb|L42023.1| Haemophilus influenzae Rd KW20, complete genome 40 9.5 
>ref|XM_467289.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1624

 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 86/104 (82%)
 Strand = Plus / Minus

                                                                        
Query: 429  cctcccttcttgccgaatatcatctcgtcgaggtcatcgagcacaccttcgtcttcccca 488
            |||||||||||||| ||||||||||| ||||| ||||| || | | | || ||| | || 
Sbjct: 1371 cctcccttcttgccaaatatcatctcatcgagatcatcaaggatatcatcatctccacct 1312

                                                        
Query: 489  ggctttgctcgagtaccggccggttttctgaccagggcctcttc 532
            | | ||||||||| ||| || ||||||||||||||||| |||||
Sbjct: 1311 gaccttgctcgagaaccagctggttttctgaccagggcatcttc 1268



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 363  attaggtcatctttcttcgtgtcctgctttt 393
            |||||||||||||||||||  ||||||||||
Sbjct: 1425 attaggtcatctttcttcggatcctgctttt 1395



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 47/55 (85%)
 Strand = Plus / Minus

                                                                   
Query: 620  cgggtttcttcatctcttcgtatctggatagcactttctggatctcgtcgttcac 674
            ||||||||||||||| ||| ||| |||| ||||| || |||||||| || |||||
Sbjct: 1187 cgggtttcttcatctgttcatatttggacagcaccttttggatctcatcattcac 1133
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>emb|AJ495787.1|OSA495787 Oryza sativa (japonica cultivar-group) mRNA for TOM1 protein
          Length = 1740

 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 86/104 (82%)
 Strand = Plus / Minus

                                                                        
Query: 429  cctcccttcttgccgaatatcatctcgtcgaggtcatcgagcacaccttcgtcttcccca 488
            |||||||||||||| ||||||||||| ||||| ||||| || | | | || ||| | || 
Sbjct: 1370 cctcccttcttgccaaatatcatctcatcgagatcatcaaggatatcatcatctccacct 1311

                                                        
Query: 489  ggctttgctcgagtaccggccggttttctgaccagggcctcttc 532
            | | ||||||||| ||| || ||||||||||||||||| |||||
Sbjct: 1310 gaccttgctcgagaaccagctggttttctgaccagggcatcttc 1267



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 47/55 (85%)
 Strand = Plus / Minus

                                                                   
Query: 620  cgggtttcttcatctcttcgtatctggatagcactttctggatctcgtcgttcac 674
            ||||||||||||||| ||| ||| |||| ||||| || |||||||| || |||||
Sbjct: 1186 cgggtttcttcatctgttcatatttggacagcaccttttggatctcatcattcac 1132



 Score = 40.1 bits (20), Expect = 9.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 366  aggtcatctttcttcgtgtcctgctttt 393
            ||||||||||||||||  ||||||||||
Sbjct: 1421 aggtcatctttcttcggatcctgctttt 1394
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 86/104 (82%)
 Strand = Plus / Minus

                                                                            
Query: 429      cctcccttcttgccgaatatcatctcgtcgaggtcatcgagcacaccttcgtcttcccca 488
                |||||||||||||| ||||||||||| ||||| ||||| || | | | || ||| | || 
Sbjct: 28694997 cctcccttcttgccaaatatcatctcatcgagatcatcaaggatatcatcatctccacct 28694938

                                                            
Query: 489      ggctttgctcgagtaccggccggttttctgaccagggcctcttc 532
                | | ||||||||| ||| || ||||||||||||||||| |||||
Sbjct: 28694937 gaccttgctcgagaaccagctggttttctgaccagggcatcttc 28694894



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                               
Query: 363      attaggtcatctttcttcgtgtcctgctttt 393
                |||||||||||||||||||  ||||||||||
Sbjct: 28695051 attaggtcatctttcttcggatcctgctttt 28695021



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 47/55 (85%)
 Strand = Plus / Minus

                                                                       
Query: 620      cgggtttcttcatctcttcgtatctggatagcactttctggatctcgtcgttcac 674
                ||||||||||||||| ||| ||| |||| ||||| || |||||||| || |||||
Sbjct: 28694813 cgggtttcttcatctgttcatatttggacagcaccttttggatctcatcattcac 28694759
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>dbj|AP005868.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0666E12
          Length = 47765

 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 86/104 (82%)
 Strand = Plus / Minus

                                                                         
Query: 429   cctcccttcttgccgaatatcatctcgtcgaggtcatcgagcacaccttcgtcttcccca 488
             |||||||||||||| ||||||||||| ||||| ||||| || | | | || ||| | || 
Sbjct: 43010 cctcccttcttgccaaatatcatctcatcgagatcatcaaggatatcatcatctccacct 42951

                                                         
Query: 489   ggctttgctcgagtaccggccggttttctgaccagggcctcttc 532
             | | ||||||||| ||| || ||||||||||||||||| |||||
Sbjct: 42950 gaccttgctcgagaaccagctggttttctgaccagggcatcttc 42907



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                            
Query: 363   attaggtcatctttcttcgtgtcctgctttt 393
             |||||||||||||||||||  ||||||||||
Sbjct: 43064 attaggtcatctttcttcggatcctgctttt 43034



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 47/55 (85%)
 Strand = Plus / Minus

                                                                    
Query: 620   cgggtttcttcatctcttcgtatctggatagcactttctggatctcgtcgttcac 674
             ||||||||||||||| ||| ||| |||| ||||| || |||||||| || |||||
Sbjct: 42826 cgggtttcttcatctgttcatatttggacagcaccttttggatctcatcattcac 42772
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>dbj|AP004778.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0459B01
          Length = 163087

 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 86/104 (82%)
 Strand = Plus / Minus

                                                                         
Query: 429   cctcccttcttgccgaatatcatctcgtcgaggtcatcgagcacaccttcgtcttcccca 488
             |||||||||||||| ||||||||||| ||||| ||||| || | | | || ||| | || 
Sbjct: 11570 cctcccttcttgccaaatatcatctcatcgagatcatcaaggatatcatcatctccacct 11511

                                                         
Query: 489   ggctttgctcgagtaccggccggttttctgaccagggcctcttc 532
             | | ||||||||| ||| || ||||||||||||||||| |||||
Sbjct: 11510 gaccttgctcgagaaccagctggttttctgaccagggcatcttc 11467



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                            
Query: 363   attaggtcatctttcttcgtgtcctgctttt 393
             |||||||||||||||||||  ||||||||||
Sbjct: 11624 attaggtcatctttcttcggatcctgctttt 11594



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 47/55 (85%)
 Strand = Plus / Minus

                                                                    
Query: 620   cgggtttcttcatctcttcgtatctggatagcactttctggatctcgtcgttcac 674
             ||||||||||||||| ||| ||| |||| ||||| || |||||||| || |||||
Sbjct: 11386 cgggtttcttcatctgttcatatttggacagcaccttttggatctcatcattcac 11332
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>dbj|AK066018.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013047D24, full
            insert sequence
          Length = 1624

 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 86/104 (82%)
 Strand = Plus / Minus

                                                                        
Query: 429  cctcccttcttgccgaatatcatctcgtcgaggtcatcgagcacaccttcgtcttcccca 488
            |||||||||||||| ||||||||||| ||||| ||||| || | | | || ||| | || 
Sbjct: 1371 cctcccttcttgccaaatatcatctcatcgagatcatcaaggatatcatcatctccacct 1312

                                                        
Query: 489  ggctttgctcgagtaccggccggttttctgaccagggcctcttc 532
            | | ||||||||| ||| || ||||||||||||||||| |||||
Sbjct: 1311 gaccttgctcgagaaccagctggttttctgaccagggcatcttc 1268



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 363  attaggtcatctttcttcgtgtcctgctttt 393
            |||||||||||||||||||  ||||||||||
Sbjct: 1425 attaggtcatctttcttcggatcctgctttt 1395



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 47/55 (85%)
 Strand = Plus / Minus

                                                                   
Query: 620  cgggtttcttcatctcttcgtatctggatagcactttctggatctcgtcgttcac 674
            ||||||||||||||| ||| ||| |||| ||||| || |||||||| || |||||
Sbjct: 1187 cgggtttcttcatctgttcatatttggacagcaccttttggatctcatcattcac 1133
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>gb|AY104127.1| Zea mays PCO110287 mRNA sequence
          Length = 1870

 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                            
Query: 419  ggagctgccccctcccttcttgccgaatatcatctcgtcgaggtcatc 466
            ||||||||  |||||||||||||| ||||||||||||||||| |||||
Sbjct: 1459 ggagctgctacctcccttcttgccaaatatcatctcgtcgagatcatc 1412



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 55/65 (84%)
 Strand = Plus / Minus

                                                                        
Query: 627  cttcatctcttcgtatctggatagcactttctggatctcgtcgttcacggtcagggcctc 686
            ||||||||| |||||  | ||||  |||||||||||||| ||||||||| ||| ||||||
Sbjct: 1258 cttcatctcctcgtacttcgataatactttctggatctcatcgttcacgctcaaggcctc 1199

                 
Query: 687  gaaga 691
             ||||
Sbjct: 1198 aaaga 1194
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>gb|AY316746.1| Rhizobium sp. NGR234 megaplasmid 2 contig 2, complete sequence
          Length = 236455

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 448   tcatctcgtcgaggtcatcgagcac 472
             ||||||| |||||||||||||||||
Sbjct: 58946 tcatctcatcgaggtcatcgagcac 58922
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>emb|AL139428.15| Human DNA sequence from clone RP5-977F20 on chromosome 1, complete
             sequence
          Length = 43679

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 321   cttctcatcccaggaactggc 341
             |||||||||||||||||||||
Sbjct: 19097 cttctcatcccaggaactggc 19077
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 538     cggcgccggtggggtcctcat 558
               |||||||||||||||||||||
Sbjct: 1140727 cggcgccggtggggtcctcat 1140747
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>gb|CP000057.1| Haemophilus influenzae strain 86-028NP, complete genome
          Length = 1913428

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 564    gcttctgcggggatcggtat 583
              ||||||||||||||||||||
Sbjct: 721398 gcttctgcggggatcggtat 721379
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>ref|XM_418180.1| PREDICTED: Gallus gallus similar to glycoprotein Ib (LOC420059),
           mRNA
          Length = 2088

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 472 caccttcgtcttccccaggc 491
           ||||||||||||||||||||
Sbjct: 825 caccttcgtcttccccaggc 806
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>emb|CR954257.1| Anopheles gambiae Pen-1 region; BAC clone 32F02 from library NotreDame1
             of Anopheles gambiae (African malaria mosquito) strain
             PEST
          Length = 137277

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 402   tccacatcctcctgggagga 421
             ||||||||||||||||||||
Sbjct: 18820 tccacatcctcctgggagga 18839
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>gb|AC116709.4| Mus musculus chromosome 1, clone RP23-91L14, complete sequence
          Length = 188848

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 395    agccccatccacatcctcct 414
              ||||||||||||||||||||
Sbjct: 145891 agccccatccacatcctcct 145910
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>gb|AC145772.1| Pan troglodytes BAC clone RP43-14J20 from 7, complete sequence
          Length = 165087

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 53     tgagtgttcttcacaacttt 72
              ||||||||||||||||||||
Sbjct: 149397 tgagtgttcttcacaacttt 149378
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>gb|AC164076.3| Mus musculus chromosome 1, clone RP24-287C18, complete sequence
          Length = 185185

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 395   agccccatccacatcctcct 414
             ||||||||||||||||||||
Sbjct: 29755 agccccatccacatcctcct 29774
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>gb|AC127789.4| Rattus norvegicus 1 BAC CH230-15M17 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 240825

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 130    agaacatgatgacaagtgaa 149
              ||||||||||||||||||||
Sbjct: 182637 agaacatgatgacaagtgaa 182656
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>gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome
          Length = 5373180

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 58      gttcttcacaactttctaaa 77
               ||||||||||||||||||||
Sbjct: 1359320 gttcttcacaactttctaaa 1359339
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>gb|AF389113.1|AF389113 Rhizobium sp. NGR234, cosmid pXB826, complete sequence
          Length = 35523

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 450   atctcgtcgaggtcatcgag 469
             ||||||||||||||||||||
Sbjct: 11850 atctcgtcgaggtcatcgag 11869
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>gb|AC093262.2| Homo sapiens chromosome 5 clone RP11-252F20, complete sequence
          Length = 164513

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 74     taaaaagatgcatgtattgg 93
              ||||||||||||||||||||
Sbjct: 103871 taaaaagatgcatgtattgg 103852
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>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome
          Length = 3147090

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 401  atccacatcctcctgggagg 420
            ||||||||||||||||||||
Sbjct: 9685 atccacatcctcctgggagg 9666
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>gb|L42023.1| Haemophilus influenzae Rd KW20, complete genome
          Length = 1830138

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 564    gcttctgcggggatcggtat 583
              ||||||||||||||||||||
Sbjct: 691863 gcttctgcggggatcggtat 691844


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,243,251
Number of Sequences: 3902068
Number of extensions: 5243251
Number of successful extensions: 93574
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 93361
Number of HSP's gapped (non-prelim): 213
length of query: 691
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 668
effective length of database: 17,143,297,704
effective search space: 11451722866272
effective search space used: 11451722866272
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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