ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags4j09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HRPX_PLALO (P04929) Histidine-rich glycoprotein precursor 30 2.5
2MYSS_CYPCA (Q90339) Myosin heavy chain, fast skeletal muscle 29 7.3
3GLT1_YEAST (Q12680) Glutamate synthase [NADPH] precursor (EC 1.4... 28 9.6

>HRPX_PLALO (P04929) Histidine-rich glycoprotein precursor|
          Length = 351

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 26/125 (20%), Positives = 43/125 (34%), Gaps = 5/125 (4%)
 Frame = +1

Query: 52  SLTKSQPKV*SXILLSQLTTPISIRFKVAYDLPHHXHWXLLTQPHH-----H*TRTLSDP 216
           SL K  P+  S +   ++    ++  +  ++  HH H     +PHH     H      +P
Sbjct: 29  SLVKHIPQTGSNLTFDRVLVEDTVHPEHLHEEHHHHHPEEHHEPHHEEHHHHHPEEHHEP 88

Query: 217 H**AQRQFHH*KQTLSLXVGISPLDFYXAPLHCHIRLXPFQHXHISYLGLWKHLHQXGHH 396
           H     + HH                +  P H H    P  H H+ +     H     HH
Sbjct: 89  H---HEEHHH---------------HHPHPHHHHHHHPPHHHHHLGHHHHHHHAAHHHHH 130

Query: 397 EDDEY 411
           E+  +
Sbjct: 131 EEHHH 135



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>MYSS_CYPCA (Q90339) Myosin heavy chain, fast skeletal muscle|
          Length = 1935

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = -3

Query: 418 ERSTHHLHDVLXGEDASTTQDRICEXVEMEXAEYDNAMEXRRSLRVRYLHXVKEFVSND- 242
           ERS H  + ++ G      +  + E + +    YD  M  +  + V+ ++ V+EF++ D 
Sbjct: 282 ERSYHIFYQLMTGH-----KPELLEALLITTNPYDYPMISQGEITVKSINDVEEFIATDT 336

Query: 241 EIDVVPINEDQ 209
            ID++    D+
Sbjct: 337 AIDILGFTADE 347



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>GLT1_YEAST (Q12680) Glutamate synthase [NADPH] precursor (EC 1.4.1.13)|
            (NADPH-GOGAT)
          Length = 2144

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 262  KEFVSNDEIDVVPINEDQIEFESNDDGVGLEXTNXNGEE 146
            KEF+ NDE +V  I   ++E++ +  GV       N EE
Sbjct: 1998 KEFIGNDEGEVTAIRTVRVEWKKSQSGVWQMVEIPNSEE 2036


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,611,184
Number of Sequences: 219361
Number of extensions: 747726
Number of successful extensions: 1642
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1631
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3246866728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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