| Clone Name | rbags4j09 |
|---|---|
| Clone Library Name | barley_pub |
>emb|BX663614.24| Zebrafish DNA sequence from clone DKEY-148L2 in linkage group 6, complete sequence Length = 191715 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 240 tcatcattagaaacaaactctt 261 |||||||||||||||||||||| Sbjct: 179542 tcatcattagaaacaaactctt 179563
>emb|BX927303.11| Zebrafish DNA sequence from clone CH211-67L13 in linkage group 6, complete sequence Length = 163380 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 240 tcatcattagaaacaaactctt 261 |||||||||||||||||||||| Sbjct: 140169 tcatcattagaaacaaactctt 140148
>gb|AC104864.6| Homo sapiens chromosome 8, clone RP11-324E17, complete sequence Length = 168786 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 394 catgaagatgatgagtacttc 414 ||||||||||||||||||||| Sbjct: 24845 catgaagatgatgagtacttc 24865
>gb|AC073359.12| Homo sapiens 3 BAC RP11-439C8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 178336 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 410 acttctttctcttgtctagca 430 ||||||||||||||||||||| Sbjct: 144233 acttctttctcttgtctagca 144253
>gb|AC018796.4|AC018796 Homo sapiens chromosome 8, clone RP11-51K12, complete sequence Length = 148189 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 394 catgaagatgatgagtacttc 414 ||||||||||||||||||||| Sbjct: 145156 catgaagatgatgagtacttc 145176
>dbj|BA000031.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromosome 1, complete sequence Length = 3288558 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 56 tcactaagtcacaaccaaaag 76 ||||||||||||||||||||| Sbjct: 3009654 tcactaagtcacaaccaaaag 3009674
>ref|XM_710947.1| Candida albicans SC5314 hypothetical protein (CaO19_2200), mRNA Length = 1311 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 ttcttgctctttgattctct 56 |||||||||||||||||||| Sbjct: 1119 ttcttgctctttgattctct 1100
>ref|XM_710889.1| Candida albicans SC5314 hypothetical protein (CaO19_9746), mRNA Length = 1311 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 ttcttgctctttgattctct 56 |||||||||||||||||||| Sbjct: 1119 ttcttgctctttgattctct 1100
>ref|XM_747311.1| Aspergillus fumigatus Af293 nonribosomal peptide synthase NRPS (Afu1g10380) partial mRNA Length = 18810 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 caaggttgcatatgatcttc 148 |||||||||||||||||||| Sbjct: 912 caaggttgcatatgatcttc 931
>gb|AC005084.2| Homo sapiens BAC clone CTA-298G8 from 7, complete sequence Length = 177901 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 aatttcatcattagaaacaa 255 |||||||||||||||||||| Sbjct: 89597 aatttcatcattagaaacaa 89578
>gb|AC104866.10| Mus musculus chromosome 17, clone RP23-268C14, complete sequence Length = 176240 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 415 tttctcttgtctagcattct 434 |||||||||||||||||||| Sbjct: 117380 tttctcttgtctagcattct 117399
>emb|AL607125.14| Mouse DNA sequence from clone RP23-309F11 on chromosome 11, complete sequence Length = 170708 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 386 gaggacatcatgaagatgatgagt 409 |||||||||||||| ||||||||| Sbjct: 63403 gaggacatcatgaacatgatgagt 63426
>dbj|AP008934.1| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 DNA, complete genome Length = 2516575 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 caacgtcaatttcatcatta 248 |||||||||||||||||||| Sbjct: 2245839 caacgtcaatttcatcatta 2245858
>gb|AE014299.1| Shewanella oneidensis MR-1, complete genome Length = 4969803 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 234 tcaatttcatcattagaaac 253 |||||||||||||||||||| Sbjct: 1681520 tcaatttcatcattagaaac 1681539
>emb|AL844588.17| Mouse DNA sequence from clone RP23-244N6 on chromosome 2, complete sequence Length = 142422 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 ctcacaactcacaacaccaa 115 |||||||||||||||||||| Sbjct: 33595 ctcacaactcacaacaccaa 33576
>gb|AC110186.10| Mus musculus chromosome 7, clone RP24-503J9, complete sequence Length = 168058 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 tttcatcattagaaacaaac 257 |||||||||||||||||||| Sbjct: 103566 tttcatcattagaaacaaac 103585 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,735,380 Number of Sequences: 3902068 Number of extensions: 3735380 Number of successful extensions: 70069 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 70003 Number of HSP's gapped (non-prelim): 66 length of query: 480 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 458 effective length of database: 17,147,199,772 effective search space: 7853417495576 effective search space used: 7853417495576 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)