ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags4j01 |
|---|---|
| Clone Library Name | barley_pub |
>K1043_MOUSE (Q80XJ3) TPR repeat-containing protein KIAA1043| Length = 1691 Score = 38.9 bits (89), Expect = 0.003 Identities = 20/62 (32%), Positives = 34/62 (54%) Frame = -1 Query: 396 EEKKAVRGLGASLQRLGQYREAMSWYYRVLALSKETGEDSGCTEAYGAIADCCADLGDLE 217 ++ KA RGLG + G ++A+ + + L ++ E GE S +AYG + + LG+ E Sbjct: 150 DQAKAYRGLGNGHRATGSLQQALVCFEKRLVVAHELGEASNKAQAYGELGSLHSQLGNYE 209 Query: 216 GA 211 A Sbjct: 210 QA 211 Score = 38.5 bits (88), Expect = 0.004 Identities = 22/74 (29%), Positives = 37/74 (50%) Frame = -1 Query: 405 DRFEEKKAVRGLGASLQRLGQYREAMSWYYRVLALSKETGEDSGCTEAYGAIADCCADLG 226 DR E A GLG Q++G+Y A+ ++ L +++ET + AYG + LG Sbjct: 227 DRALESDAACGLGGVYQQMGEYDTALQYHQLDLQIAEETDNPTCQGRAYGNLGLTYESLG 286 Query: 225 DLEGAARLYDEYIS 184 E A ++++S Sbjct: 287 TFERAVVYQEQHLS 300 Score = 37.4 bits (85), Expect = 0.009 Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 3/76 (3%) Frame = -1 Query: 393 EKKAVRGLGASLQRLGQYREAMSWYYRVLALSKETGEDSGCTE---AYGAIADCCADLGD 223 E + +G + + +A+ ++ + LA+ ++ + + AYG + DC LGD Sbjct: 68 EAQVYGNMGITKMNMNVMEDAIGYFEQQLAMLQQLSGNESVLDRGRAYGNLGDCYEALGD 127 Query: 222 LEGAARLYDEYISRLQ 175 E A + Y++Y+S Q Sbjct: 128 YEEAIKYYEQYLSVAQ 143 Score = 28.5 bits (62), Expect = 4.0 Identities = 15/65 (23%), Positives = 31/65 (47%) Frame = -1 Query: 387 KAVRGLGASLQRLGQYREAMSWYYRVLALSKETGEDSGCTEAYGAIADCCADLGDLEGAA 208 +A LG + LG Y EA+ +Y + L++++ +AY + + G L+ A Sbjct: 113 RAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLNRMQDQAKAYRGLGNGHRATGSLQQAL 172 Query: 207 RLYDE 193 +++ Sbjct: 173 VCFEK 177 Score = 28.5 bits (62), Expect = 4.0 Identities = 19/73 (26%), Positives = 33/73 (45%) Frame = -1 Query: 393 EKKAVRGLGASLQRLGQYREAMSWYYRVLALSKETGEDSGCTEAYGAIADCCADLGDLEG 214 E +A L A LG+Y A Y L L ++ E S + YG + ++ +E Sbjct: 28 ECRAHGHLAAVYMALGKYTMAFKCYQEQLELGRKLKEPSLEAQVYGNMGITKMNMNVMED 87 Query: 213 AARLYDEYISRLQ 175 A +++ ++ LQ Sbjct: 88 AIGYFEQQLAMLQ 100
>K1043_HUMAN (Q96AY4) TPR repeat-containing protein KIAA1043| Length = 1716 Score = 38.9 bits (89), Expect = 0.003 Identities = 22/74 (29%), Positives = 37/74 (50%) Frame = -1 Query: 405 DRFEEKKAVRGLGASLQRLGQYREAMSWYYRVLALSKETGEDSGCTEAYGAIADCCADLG 226 DR E A GLG Q++G+Y A+ ++ L +++ET + AYG + LG Sbjct: 227 DRALESDAACGLGGVYQQMGEYDTALQYHQLDLQIAEETNNPTCQGRAYGNLGLTYESLG 286 Query: 225 DLEGAARLYDEYIS 184 E A ++++S Sbjct: 287 TFERAVVYQEQHLS 300 Score = 38.5 bits (88), Expect = 0.004 Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 3/76 (3%) Frame = -1 Query: 393 EKKAVRGLGASLQRLGQYREAMSWYYRVLALSKETGEDSGCTE---AYGAIADCCADLGD 223 E + +G + + EA+ ++ + LA+ ++ + + AYG + DC LGD Sbjct: 68 EAQVYGNMGITKMNMNVMEEAIGYFEQQLAMLQQLSGNESVLDRGRAYGNLGDCYEALGD 127 Query: 222 LEGAARLYDEYISRLQ 175 E A + Y++Y+S Q Sbjct: 128 YEEAIKYYEQYLSVAQ 143 Score = 37.7 bits (86), Expect = 0.007 Identities = 19/62 (30%), Positives = 34/62 (54%) Frame = -1 Query: 396 EEKKAVRGLGASLQRLGQYREAMSWYYRVLALSKETGEDSGCTEAYGAIADCCADLGDLE 217 ++ KA RGLG + +G ++A+ + + L ++ E GE +AYG + + LG+ E Sbjct: 150 DQAKAYRGLGNGHRAMGSLQQALVCFEKRLVVAHELGEAFNKAQAYGELGSLHSQLGNYE 209 Query: 216 GA 211 A Sbjct: 210 QA 211 Score = 29.6 bits (65), Expect = 1.8 Identities = 15/65 (23%), Positives = 32/65 (49%) Frame = -1 Query: 387 KAVRGLGASLQRLGQYREAMSWYYRVLALSKETGEDSGCTEAYGAIADCCADLGDLEGAA 208 +A LG + LG Y EA+ +Y + L++++ +AY + + +G L+ A Sbjct: 113 RAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLNRMQDQAKAYRGLGNGHRAMGSLQQAL 172 Query: 207 RLYDE 193 +++ Sbjct: 173 VCFEK 177
>Y095_TREPA (O83133) Hypothetical protein TP0095| Length = 648 Score = 28.9 bits (63), Expect = 3.1 Identities = 23/64 (35%), Positives = 29/64 (45%) Frame = -1 Query: 372 LGASLQRLGQYREAMSWYYRVLALSKETGEDSGCTEAYGAIADCCADLGDLEGAARLYDE 193 LG + RLG A+ WY + L L E ++ C G IA C L D A Y Sbjct: 434 LGVTYVRLGMADLALRWYEKTLLLDAE--DEEACV---GLIA-CYEALCDDARAYTQYGA 487 Query: 192 YISR 181 Y+SR Sbjct: 488 YLSR 491
>CDC27_YEAST (P38042) Anaphase-promoting complex subunit CDC27 (Cell division| control protein 27) (Anaphase-promoting complex subunit 3) Length = 758 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/29 (37%), Positives = 19/29 (65%) Frame = -1 Query: 384 AVRGLGASLQRLGQYREAMSWYYRVLALS 298 A GLG S +LGQY EA+ ++ + +++ Sbjct: 610 AYYGLGTSAMKLGQYEEALLYFEKARSIN 638
>CWLL_BACLI (P36550) N-acetylmuramoyl-L-alanine amidase cwlL precursor (EC| 3.5.1.28) (Cell wall hydrolase) (Autolysin) Length = 360 Score = 27.3 bits (59), Expect = 8.9 Identities = 17/59 (28%), Positives = 30/59 (50%) Frame = +2 Query: 14 VKRQAKSAHFPPDSKQAIFDIRSRATDGLWHDDQ*VGRSRVFAHQERPSAQSRGCSLDM 190 +KR+A SAH+ D K+A I HD ++R + +P+A ++ S++M Sbjct: 53 IKRKASSAHYFVDRKEAQHIIPENEVAYHAHD-----KNRCYVSFLKPNANTKSISVEM 106
>GPX2_RAT (P83645) Glutathione peroxidase 2 (EC 1.11.1.9) (GSHPx-2) (GPx-2)| (Glutathione peroxidase-gastrointestinal) (GSHPx-GI) Length = 190 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/46 (30%), Positives = 24/46 (52%) Frame = -3 Query: 142 SKHSASSYLLIIMPEPVSRPASDVKDCLLAIWRKMSRFCLSFNWRR 5 ++H +YL +P P P S + D L IW + R +S+N+ + Sbjct: 111 NQHPVFAYLKDKLPYPYDDPFSLMTDPKLIIWSPVRRSDVSWNFEK 156
>GPX2_MOUSE (Q9JHC0) Glutathione peroxidase 2 (EC 1.11.1.9) (GSHPx-2) (GPx-2)| (Glutathione peroxidase-gastrointestinal) (GSHPx-GI) Length = 190 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/46 (30%), Positives = 24/46 (52%) Frame = -3 Query: 142 SKHSASSYLLIIMPEPVSRPASDVKDCLLAIWRKMSRFCLSFNWRR 5 ++H +YL +P P P S + D L IW + R +S+N+ + Sbjct: 111 NEHPVFAYLKDKLPYPYDDPFSLMTDPKLIIWSPVRRSDVSWNFEK 156
>GLMM_THEFY (Q47LM7) Phosphoglucosamine mutase (EC 5.4.2.10)| Length = 449 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/43 (32%), Positives = 20/43 (46%) Frame = +1 Query: 154 PERSIAGLQP*YVLVIQPRCSLQIAEIGAAVGYRAVGLGAARI 282 PER I G +P V+ PR S + E G + G+ R+ Sbjct: 35 PERGIPGKRPRAVVGRDPRASGEFLEAAVVAGLASAGVDVIRL 77
>Y108_MYCPN (P75561) Hypothetical adenine-specific methylase MPN108 (EC| 2.1.1.72) (C09_orf404) Length = 404 Score = 27.3 bits (59), Expect = 8.9 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 3/54 (5%) Frame = -1 Query: 405 DRFEEKKAVRG---LGASLQRLGQYREAMSWYYRVLALSKETGEDSGCTEAYGA 253 D +E KK + L + + YY + A ++T ED GC A GA Sbjct: 125 DEYERKKHIMTKMLFSIDLTKFTSLMVRRTLYYCIKANKRKTSEDEGCAIANGA 178
>YQJY_BACSU (P54562) Hypothetical protein yqjY| Length = 156 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/30 (43%), Positives = 16/30 (53%) Frame = +3 Query: 9 RQLKDKQNRLIFRQIASKQSLTSEAGRLTG 98 RQLK+K RL F +TSE +TG Sbjct: 25 RQLKEKLPRLFFEHFQDTSFITSEHNSMTG 54 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,178,766 Number of Sequences: 219361 Number of extensions: 887737 Number of successful extensions: 2356 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 2306 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2356 length of database: 80,573,946 effective HSP length: 110 effective length of database: 56,444,236 effective search space used: 1354661664 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
