ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags4j01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_466436.1| Oryza sativa (japonica cultivar-group), mRNA 178 9e-42
2dbj|AK069595.1| Oryza sativa (japonica cultivar-group) cDNA clon... 178 9e-42
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 139 8e-30
4dbj|AP005644.3| Oryza sativa (japonica cultivar-group) genomic D... 139 8e-30
5gb|BT016563.1| Zea mays clone Contig396 mRNA sequence 117 3e-23
6gb|AY108049.1| Zea mays PCO078116 mRNA sequence 117 3e-23
7emb|CT009620.9| Zebrafish DNA sequence from clone CH73-187F10 in... 40 5.4
8gb|AC147133.2| Pan troglodytes BAC clone CH251-372A19 from Y, co... 40 5.4
9emb|AL591791.1|SME591791 Sinorhizobium meliloti 1021 complete ch... 40 5.4
10emb|AL592494.4| Human DNA sequence from clone RP11-344P13 on chr... 40 5.4
11emb|AL139145.9| Human DNA sequence from clone RP4-579A20 on chro... 40 5.4
12dbj|BS000646.3| Pan troglodytes chromosome Y clone: PTB-569F12, ... 40 5.4
13dbj|BS000642.2| Pan troglodytes chromosome Y clone: PTB-307G08, ... 40 5.4
14gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 40 5.4
15dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 5.4
16gb|AC016623.6| Homo sapiens chromosome 5 clone CTD-2345N17, comp... 40 5.4
17gb|AC073536.5| Homo sapiens chromosome 5 clone CTD-2068E4, compl... 40 5.4
18gb|AC146450.5| Pan troglodytes BAC clone clone CH251-552K12 from... 40 5.4
19dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 5.4
20gb|AC006371.2|AC006371 Homo sapiens BAC clone RP11-304C24 from Y... 40 5.4
21gb|AC102839.24| Mus musculus chromosome 5, clone RP24-343D8, com... 40 5.4
22gb|AC006500.4|AC006500 Homo sapiens, clone hRPK.31_A_1, complete... 40 5.4 
>ref|XM_466436.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1375

 Score =  178 bits (90), Expect = 9e-42
 Identities = 198/234 (84%)
 Strand = Plus / Minus

                                                                        
Query: 172  gggctgcagccttgatatgtactcgtcatacaacctcgctgctccctccaaatcgccgag 231
            |||||||| |||||||||||||| |||||||||| |||| |||| ||| | ||| || ||
Sbjct: 1076 gggctgcaaccttgatatgtacttgtcatacaacttcgccgctcgctctagatccccaag 1017

                                                                        
Query: 232  atcggcgcagcagtcggctatcgcgccgtaggcctcggtgcagccagaatcctcgccggt 291
             || | | ||||||| ||||| |||||||||||||||||||| || ||||||||||| ||
Sbjct: 1016 ctccgtgtagcagtcagctatggcgccgtaggcctcggtgcacccggaatcctcgcccgt 957

                                                                        
Query: 292  ttcctttgatagcgccaggaccctgtagtaccagctcattgcttctctgtactgtcccaa 351
            |||||| || ||| |||||||  | ||||| ||| |||||||||||||||| |  |||||
Sbjct: 956  ttccttggaaagctccaggactttatagtagcagttcattgcttctctgtatttgcccaa 897

                                                                  
Query: 352  cctttgcagtgatgcgcctaatcctcgcacagctttcttctcctcaaagcgatc 405
             ||||| || ||||| |||||||| ||  |||||||||||||||||||||||||
Sbjct: 896  tctttgtagcgatgcacctaatccacgagcagctttcttctcctcaaagcgatc 843
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>dbj|AK069595.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023024G02, full
            insert sequence
          Length = 1375

 Score =  178 bits (90), Expect = 9e-42
 Identities = 198/234 (84%)
 Strand = Plus / Minus

                                                                        
Query: 172  gggctgcagccttgatatgtactcgtcatacaacctcgctgctccctccaaatcgccgag 231
            |||||||| |||||||||||||| |||||||||| |||| |||| ||| | ||| || ||
Sbjct: 1076 gggctgcaaccttgatatgtacttgtcatacaacttcgccgctcgctctagatccccaag 1017

                                                                        
Query: 232  atcggcgcagcagtcggctatcgcgccgtaggcctcggtgcagccagaatcctcgccggt 291
             || | | ||||||| ||||| |||||||||||||||||||| || ||||||||||| ||
Sbjct: 1016 ctccgtgtagcagtcagctatggcgccgtaggcctcggtgcacccggaatcctcgcccgt 957

                                                                        
Query: 292  ttcctttgatagcgccaggaccctgtagtaccagctcattgcttctctgtactgtcccaa 351
            |||||| || ||| |||||||  | ||||| ||| |||||||||||||||| |  |||||
Sbjct: 956  ttccttggaaagctccaggactttatagtagcagttcattgcttctctgtatttgcccaa 897

                                                                  
Query: 352  cctttgcagtgatgcgcctaatcctcgcacagctttcttctcctcaaagcgatc 405
             ||||| || ||||| |||||||| ||  |||||||||||||||||||||||||
Sbjct: 896  tctttgtagcgatgcacctaatccacgagcagctttcttctcctcaaagcgatc 843
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  139 bits (70), Expect = 8e-30
 Identities = 169/202 (83%)
 Strand = Plus / Minus

                                                                            
Query: 172      gggctgcagccttgatatgtactcgtcatacaacctcgctgctccctccaaatcgccgag 231
                |||||||| |||||||||||||| |||||||||| |||| |||| ||| | ||| || ||
Sbjct: 22639102 gggctgcaaccttgatatgtacttgtcatacaacttcgccgctcgctctagatccccaag 22639043

                                                                            
Query: 232      atcggcgcagcagtcggctatcgcgccgtaggcctcggtgcagccagaatcctcgccggt 291
                 || | | ||||||| ||||| |||||||||||||||||||| || ||||||||||| ||
Sbjct: 22639042 ctccgtgtagcagtcagctatggcgccgtaggcctcggtgcacccggaatcctcgcccgt 22638983

                                                                            
Query: 292      ttcctttgatagcgccaggaccctgtagtaccagctcattgcttctctgtactgtcccaa 351
                |||||| || ||| |||||||  | ||||| ||| |||||||||||||||| |  |||||
Sbjct: 22638982 ttccttggaaagctccaggactttatagtagcagttcattgcttctctgtatttgcccaa 22638923

                                      
Query: 352      cctttgcagtgatgcgcctaat 373
                 ||||| || ||||| ||||||
Sbjct: 22638922 tctttgtagcgatgcacctaat 22638901



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                      
Query: 368      cctaatcctcgcacagctttcttctcctcaaagcgatc 405
                |||||||| ||  |||||||||||||||||||||||||
Sbjct: 22638518 cctaatccacgagcagctttcttctcctcaaagcgatc 22638481
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>dbj|AP005644.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0056I22
          Length = 147728

 Score =  139 bits (70), Expect = 8e-30
 Identities = 169/202 (83%)
 Strand = Plus / Minus

                                                                         
Query: 172   gggctgcagccttgatatgtactcgtcatacaacctcgctgctccctccaaatcgccgag 231
             |||||||| |||||||||||||| |||||||||| |||| |||| ||| | ||| || ||
Sbjct: 86913 gggctgcaaccttgatatgtacttgtcatacaacttcgccgctcgctctagatccccaag 86854

                                                                         
Query: 232   atcggcgcagcagtcggctatcgcgccgtaggcctcggtgcagccagaatcctcgccggt 291
              || | | ||||||| ||||| |||||||||||||||||||| || ||||||||||| ||
Sbjct: 86853 ctccgtgtagcagtcagctatggcgccgtaggcctcggtgcacccggaatcctcgcccgt 86794

                                                                         
Query: 292   ttcctttgatagcgccaggaccctgtagtaccagctcattgcttctctgtactgtcccaa 351
             |||||| || ||| |||||||  | ||||| ||| |||||||||||||||| |  |||||
Sbjct: 86793 ttccttggaaagctccaggactttatagtagcagttcattgcttctctgtatttgcccaa 86734

                                   
Query: 352   cctttgcagtgatgcgcctaat 373
              ||||| || ||||| ||||||
Sbjct: 86733 tctttgtagcgatgcacctaat 86712



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                   
Query: 368   cctaatcctcgcacagctttcttctcctcaaagcgatc 405
             |||||||| ||  |||||||||||||||||||||||||
Sbjct: 86329 cctaatccacgagcagctttcttctcctcaaagcgatc 86292
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>gb|BT016563.1| Zea mays clone Contig396 mRNA sequence
          Length = 1182

 Score =  117 bits (59), Expect = 3e-23
 Identities = 194/239 (81%)
 Strand = Plus / Minus

                                                                        
Query: 167  tcgcggggctgcagccttgatatgtactcgtcatacaacctcgctgctccctccaaatcg 226
            |||| |||||||||||| |||||||||| |||||||| | |||| |||| |||||  |||
Sbjct: 1018 tcgccgggctgcagcctcgatatgtacttgtcatacaccttcgccgctcgctccaggtcg 959

                                                                        
Query: 227  ccgagatcggcgcagcagtcggctatcgcgccgtaggcctcggtgcagccagaatcctcg 286
            || || |||| | ||||||| ||||| || ||||||||||||||||| || ||||| || 
Sbjct: 958  cccagctcggtgtagcagtccgctatggcaccgtaggcctcggtgcaaccggaatcttca 899

                                                                        
Query: 287  ccggtttcctttgatagcgccaggaccctgtagtaccagctcattgcttctctgtactgt 346
            || || ||||| || ||| |||| ||| ||  ||||   ||||||||||||| |||||  
Sbjct: 898  cctgtctccttggacagctccagaaccttgctgtactgtctcattgcttctcggtacttc 839

                                                                       
Query: 347  cccaacctttgcagtgatgcgcctaatcctcgcacagctttcttctcctcaaagcgatc 405
            || | ||| ||||| |||||||||| ||||||  |||||||||| || ||||| |||||
Sbjct: 838  ccgagcctctgcagcgatgcgcctagtcctcgggcagctttcttttcttcaaaacgatc 780
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>gb|AY108049.1| Zea mays PCO078116 mRNA sequence
          Length = 1188

 Score =  117 bits (59), Expect = 3e-23
 Identities = 194/239 (81%)
 Strand = Plus / Minus

                                                                        
Query: 167  tcgcggggctgcagccttgatatgtactcgtcatacaacctcgctgctccctccaaatcg 226
            |||| |||||||||||| |||||||||| |||||||| | |||| |||| |||||  |||
Sbjct: 1054 tcgccgggctgcagcctcgatatgtacttgtcatacaccttcgccgctcgctccaggtcg 995

                                                                        
Query: 227  ccgagatcggcgcagcagtcggctatcgcgccgtaggcctcggtgcagccagaatcctcg 286
            || || |||| | ||||||| ||||| || ||||||||||||||||| || ||||| || 
Sbjct: 994  cccagctcggtgtagcagtccgctatggcaccgtaggcctcggtgcaaccggaatcttca 935

                                                                        
Query: 287  ccggtttcctttgatagcgccaggaccctgtagtaccagctcattgcttctctgtactgt 346
            || || ||||| || ||| |||| ||| ||  ||||   ||||||||||||| |||||  
Sbjct: 934  cctgtctccttggacagctccagaaccttgctgtactgtctcattgcttctcggtacttc 875

                                                                       
Query: 347  cccaacctttgcagtgatgcgcctaatcctcgcacagctttcttctcctcaaagcgatc 405
            || | ||| ||||| |||||||||| ||||||  |||||||||| || ||||| |||||
Sbjct: 874  ccgagcctctgcagcgatgcgcctagtcctcgggcagctttcttttcttcaaaacgatc 816
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>emb|CT009620.9| Zebrafish DNA sequence from clone CH73-187F10 in linkage group 6,
             complete sequence
          Length = 95528

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 337   tctgtactgtcccaaccttt 356
             ||||||||||||||||||||
Sbjct: 39786 tctgtactgtcccaaccttt 39805
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>gb|AC147133.2| Pan troglodytes BAC clone CH251-372A19 from Y, complete sequence
          Length = 192074

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 313    cctgtagtaccagctcattg 332
              ||||||||||||||||||||
Sbjct: 141909 cctgtagtaccagctcattg 141890
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>emb|AL591791.1|SME591791 Sinorhizobium meliloti 1021 complete chromosome; segment 10/12
          Length = 340900

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 249    ctatcgcgccgtaggcctcg 268
              ||||||||||||||||||||
Sbjct: 143350 ctatcgcgccgtaggcctcg 143331
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>emb|AL592494.4| Human DNA sequence from clone RP11-344P13 on chromosome 1 Contains a
              novel gene, a embigin (Emb) (MGC71745) pseudogene, a
              mitochondrial translational initiation factor 2 (MTIF2)
              pseudogene, a novel gene,  the 3' end of a novel gene and
              two CpG islands, complete sequence
          Length = 165908

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 172    gggctgcagccttgatatgt 191
              ||||||||||||||||||||
Sbjct: 139311 gggctgcagccttgatatgt 139292
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>emb|AL139145.9| Human DNA sequence from clone RP4-579A20 on chromosome 1p32.1-32.3,
             complete sequence
          Length = 38892

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 329   attgcttctctgtactgtcc 348
             ||||||||||||||||||||
Sbjct: 30801 attgcttctctgtactgtcc 30820
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>dbj|BS000646.3| Pan troglodytes chromosome Y clone: PTB-569F12, complete sequence
          Length = 225175

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 313    cctgtagtaccagctcattg 332
              ||||||||||||||||||||
Sbjct: 219796 cctgtagtaccagctcattg 219777
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>dbj|BS000642.2| Pan troglodytes chromosome Y clone: PTB-307G08, complete sequence
          Length = 162472

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 313   cctgtagtaccagctcattg 332
             ||||||||||||||||||||
Sbjct: 11296 cctgtagtaccagctcattg 11277
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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 313      cctgtagtaccagctcattg 332
                ||||||||||||||||||||
Sbjct: 18896110 cctgtagtaccagctcattg 18896129
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 262     ggcctcggtgcagccagaatcctcgccg 289
               ||||||||||||||| |||| |||||||
Sbjct: 4783643 ggcctcggtgcagccggaatgctcgccg 4783670
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>gb|AC016623.6| Homo sapiens chromosome 5 clone CTD-2345N17, complete sequence
          Length = 153823

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 13    agttaaaagacaagcaaaat 32
             ||||||||||||||||||||
Sbjct: 40432 agttaaaagacaagcaaaat 40451
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>gb|AC073536.5| Homo sapiens chromosome 5 clone CTD-2068E4, complete sequence
          Length = 116993

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 13    agttaaaagacaagcaaaat 32
             ||||||||||||||||||||
Sbjct: 37487 agttaaaagacaagcaaaat 37506
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>gb|AC146450.5| Pan troglodytes BAC clone clone CH251-552K12 from y, complete sequence
          Length = 172072

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 313   cctgtagtaccagctcattg 332
             ||||||||||||||||||||
Sbjct: 57390 cctgtagtaccagctcattg 57371
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 228     cgagatcggcgcagcagtcggcta 251
               |||||||||||||||| |||||||
Sbjct: 4056748 cgagatcggcgcagcactcggcta 4056725
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>gb|AC006371.2|AC006371 Homo sapiens BAC clone RP11-304C24 from Y, complete sequence
          Length = 202354

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 313   cctgtagtaccagctcattg 332
             ||||||||||||||||||||
Sbjct: 91195 cctgtagtaccagctcattg 91214
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>gb|AC102839.24| Mus musculus chromosome 5, clone RP24-343D8, complete sequence
          Length = 196090

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 46    gccagatagcaagcaagcaa 65
             ||||||||||||||||||||
Sbjct: 75301 gccagatagcaagcaagcaa 75282
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>gb|AC006500.4|AC006500 Homo sapiens, clone hRPK.31_A_1, complete sequence
          Length = 147699

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 329    attgcttctctgtactgtcc 348
              ||||||||||||||||||||
Sbjct: 112237 attgcttctctgtactgtcc 112218


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,934,011
Number of Sequences: 3902068
Number of extensions: 2934011
Number of successful extensions: 53225
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53054
Number of HSP's gapped (non-prelim): 165
length of query: 405
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 383
effective length of database: 17,147,199,772
effective search space: 6567377512676
effective search space used: 6567377512676
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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