ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags4i20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y114_CHLMU (Q9PLI5) Hypothetical protein TC0114 37 0.032
2ARODE_CHLMU (P56961) Shikimate biosynthesis protein aroDE [Inclu... 29 8.6

>Y114_CHLMU (Q9PLI5) Hypothetical protein TC0114|
          Length = 122

 Score = 37.4 bits (85), Expect = 0.032
 Identities = 15/19 (78%), Positives = 18/19 (94%)
 Frame = +2

Query: 512 PASRTALMGEQPNPWNHLQ 568
           P+SRTAL+GEQPNPW+ LQ
Sbjct: 58  PSSRTALIGEQPNPWDLLQ 76



 Score = 29.6 bits (65), Expect = 6.6
 Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = +1

Query: 469 PTPDMDRTVSRRSEPSFTYRINGRTAQP---LEPPTA 570
           PT D D+TVSRR EPS    + G    P   L+P  A
Sbjct: 44  PTKDRDQTVSRRFEPSSRTALIGEQPNPWDLLQPQDA 80



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>ARODE_CHLMU (P56961) Shikimate biosynthesis protein aroDE [Includes:|
           3-dehydroquinate dehydratase (EC 4.2.1.10)
           (3-dehydroquinase) (Type I DHQase); Shikimate
           dehydrogenase (EC 1.1.1.25)]
          Length = 478

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +1

Query: 145 LHTSLHFHLTPI*TARLAATLSYFHTSVAPS 237
           LHTS H  +T + T  LA+++ Y+  +V+P+
Sbjct: 109 LHTSEHTDITQLYTQMLASSIDYYKLAVSPA 139


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,175,880
Number of Sequences: 219361
Number of extensions: 1839375
Number of successful extensions: 4491
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4491
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4986986160
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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