ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags4i19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HSP7S_PEA (Q02028) Stromal 70 kDa heat shock-related protein, ch... 55 5e-08
2HSP7S_SPIOL (Q08080) Stromal 70 kDa heat shock-related protein, ... 41 6e-04
3C3AR_CAVPO (O88680) C3a anaphylatoxin chemotactic receptor (C3a-... 28 4.0
4VG18_ICHV1 (Q00120) Hypothetical gene 18 protein 28 6.8
5PHLPL_MOUSE (Q8BXA7) PH domain leucine-rich repeat protein phosp... 27 8.9
6HMDH1_DICDI (P34135) 3-hydroxy-3-methylglutaryl-coenzyme A reduc... 27 8.9

>HSP7S_PEA (Q02028) Stromal 70 kDa heat shock-related protein, chloroplast|
           precursor
          Length = 706

 Score = 54.7 bits (130), Expect = 5e-08
 Identities = 35/77 (45%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
 Frame = -3

Query: 407 KLKXLQDAVAGGSTETIKDALXALNQEVMXXXXXXXXX-XXXXXXXXXXXXXXXXXXXXS 231
           KL  L++A+ GGST+TIKDAL ALNQEVM                              S
Sbjct: 629 KLGELKEAITGGSTQTIKDALAALNQEVMQLGQSLYNQPGAAGQAGPTPPGSESGPSESS 688

Query: 230 EKTGDGGDVIDADFTDS 180
            K G  GDVIDADFTDS
Sbjct: 689 GKEGPEGDVIDADFTDS 705



to top

>HSP7S_SPIOL (Q08080) Stromal 70 kDa heat shock-related protein, chloroplast|
           (Fragment)
          Length = 599

 Score = 41.2 bits (95), Expect = 6e-04
 Identities = 19/29 (65%), Positives = 23/29 (79%)
 Frame = -3

Query: 407 KLKXLQDAVAGGSTETIKDALXALNQEVM 321
           KL  L+DA+ GG T+ IKDA+ ALNQEVM
Sbjct: 509 KLGELKDAINGGETQAIKDAMAALNQEVM 537



to top

>C3AR_CAVPO (O88680) C3a anaphylatoxin chemotactic receptor (C3a-R) (C3AR)|
          Length = 475

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = +1

Query: 94  VPIRILGNPVEQNHTHLLHHVLTYSS---IQLLSVKSASITSPPSPVFSD 234
           +P  + G P+E+N T+ LH+    SS   +   + K  S   PP   + D
Sbjct: 261 LPTNLCGLPMEENRTNTLHNAAFLSSDLDVSNATQKCLSTPEPPQDFWDD 310



to top

>VG18_ICHV1 (Q00120) Hypothetical gene 18 protein|
          Length = 318

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 97  PIRILGNPVEQNHTHLLHH 153
           P+ +L NP+  +HT LLHH
Sbjct: 103 PVSVLENPLAVSHTLLLHH 121



to top

>PHLPL_MOUSE (Q8BXA7) PH domain leucine-rich repeat protein phosphatase-like (EC|
           3.1.3.16)
          Length = 1320

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
 Frame = +1

Query: 91  KVPIRILGN------PVEQNHTHLLHHVLTYSSIQLLSVKSASITSPPSPVFS 231
           +VP+RIL +       V  NH H+L  ++ +  +++L ++  +++  P  +FS
Sbjct: 536 EVPMRILSSLSLRKLMVGHNHIHVLPALVEHIPLEVLDIQHNTLSRLPDTLFS 588



to top

>HMDH1_DICDI (P34135) 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 (EC|
           1.1.1.34) (HMG-CoA reductase 1)
          Length = 552

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 49  QTSNITNSDTLTGDKVPIRILGN 117
           QT +ITN  T T  K+PI+ L N
Sbjct: 122 QTPDITNQPTKTNKKIPIKELSN 144


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,245,810
Number of Sequences: 219361
Number of extensions: 776906
Number of successful extensions: 1921
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1920
length of database: 80,573,946
effective HSP length: 111
effective length of database: 56,224,875
effective search space used: 1349397000
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top