| Clone Name | rbags4i07 |
|---|---|
| Clone Library Name | barley_pub |
>emb|Y14200.1|HVY14200 Hordeum vulgare mRNA for 14-3-3 protein (Hv1433c) Length = 1155 Score = 85.7 bits (43), Expect = 2e-14 Identities = 71/80 (88%), Gaps = 2/80 (2%) Strand = Plus / Minus Query: 1 acgaacggccacgaaccaccagcagtgcatgtggctnnnnnnnaagccaggaccaggagg 60 |||||||||||||| ||||||||||||||||||||| ||||||| ||||||||| Sbjct: 1102 acgaacggccacga-ccaccagcagtgcatgtggctcccccccaagccag-accaggagg 1045 Query: 61 cagccgcctacaggcagcga 80 |||||||||||||||||||| Sbjct: 1044 cagccgcctacaggcagcga 1025
>ref|NM_206094.1| Drosophila melanogaster Syntaxin 6 CG7736-RE, transcript variant E (Syx6), mRNA Length = 2087 Score = 40.1 bits (20), Expect = 0.84 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 ccaccagcagtgcatgtggc 35 |||||||||||||||||||| Sbjct: 468 ccaccagcagtgcatgtggc 449
>gb|AY089525.1| Drosophila melanogaster HL02043 full insert cDNA Length = 1916 Score = 40.1 bits (20), Expect = 0.84 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 ccaccagcagtgcatgtggc 35 |||||||||||||||||||| Sbjct: 422 ccaccagcagtgcatgtggc 403
>gb|AC013423.6|AC013423 Drosophila melanogaster, chromosome 2R, region 47D-47E, BAC clone BACR09B12, complete sequence Length = 170341 Score = 40.1 bits (20), Expect = 0.84 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 ccaccagcagtgcatgtggc 35 |||||||||||||||||||| Sbjct: 90852 ccaccagcagtgcatgtggc 90833
>gb|AE003826.4| Drosophila melanogaster chromosome 2R, section 24 of 73 of the complete sequence Length = 310108 Score = 40.1 bits (20), Expect = 0.84 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 ccaccagcagtgcatgtggc 35 |||||||||||||||||||| Sbjct: 65146 ccaccagcagtgcatgtggc 65127
>gb|AC006066.1|AC006066 Drosophila melanogaster, chromosome 2R, region 47D6-47E6, P1 clones DS00724 and DS00284, complete sequence Length = 110338 Score = 40.1 bits (20), Expect = 0.84 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 ccaccagcagtgcatgtggc 35 |||||||||||||||||||| Sbjct: 33378 ccaccagcagtgcatgtggc 33359
>ref|XM_429121.1| PREDICTED: Gallus gallus similar to PDZ domain containing RING finger 3; semaphorin cytoplasmic domain-associated protein 3A (LOC431567), mRNA Length = 915 Score = 38.2 bits (19), Expect = 3.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 48 caggaccaggaggcagccg 66 ||||||||||||||||||| Sbjct: 883 caggaccaggaggcagccg 901
>ref|XM_415947.1| PREDICTED: Gallus gallus similar to B-cell receptor-associated protein 29 (BCR-associated protein Bap29) (LOC417702), mRNA Length = 1938 Score = 38.2 bits (19), Expect = 3.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 18 accagcagtgcatgtggct 36 ||||||||||||||||||| Sbjct: 1116 accagcagtgcatgtggct 1098
>gb|AC122355.4| Mus musculus BAC clone RP23-401L7 from chromosome 14, complete sequence Length = 198831 Score = 38.2 bits (19), Expect = 3.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 46 gccaggaccaggaggcagc 64 ||||||||||||||||||| Sbjct: 16414 gccaggaccaggaggcagc 16432
>gb|AC182361.3| Spermophilus tridecemlineatus clone VMRC20-433G18, complete sequence Length = 140138 Score = 38.2 bits (19), Expect = 3.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 16 ccaccagcagtgcatgtgg 34 ||||||||||||||||||| Sbjct: 118151 ccaccagcagtgcatgtgg 118169
>gb|AC151831.3| Mus musculus BAC clone RP24-81D24 from chromosome 14, complete sequence Length = 212749 Score = 38.2 bits (19), Expect = 3.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 46 gccaggaccaggaggcagc 64 ||||||||||||||||||| Sbjct: 190060 gccaggaccaggaggcagc 190078
>emb|BX931564.1| Gallus gallus finished cDNA, clone ChEST390k12 Length = 1171 Score = 38.2 bits (19), Expect = 3.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 18 accagcagtgcatgtggct 36 ||||||||||||||||||| Sbjct: 1091 accagcagtgcatgtggct 1073
>gb|AC147596.5| Gallus gallus BAC clone CH261-29A2 from chromosome unknown, complete sequence Length = 190789 Score = 38.2 bits (19), Expect = 3.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 18 accagcagtgcatgtggct 36 ||||||||||||||||||| Sbjct: 151160 accagcagtgcatgtggct 151142 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 542,636 Number of Sequences: 3902068 Number of extensions: 542636 Number of successful extensions: 32406 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 32390 Number of HSP's gapped (non-prelim): 14 length of query: 80 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 59 effective length of database: 17,151,101,840 effective search space: 1011915008560 effective search space used: 1011915008560 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)