ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags4i01 |
|---|---|
| Clone Library Name | barley_pub |
>Y1A7_ORYSA (Q9FRA7) Hypothetical protein P0001A07.13| Length = 253 Score = 114 bits (285), Expect(2) = 7e-27 Identities = 60/92 (65%), Positives = 67/92 (72%) Frame = -2 Query: 551 RYEPVXXXXXXXXXXALNRLPLVPSVTRAVLPTAAQLSAKYNSAVLDGAKRGNSVATYLP 372 RYEPV ALNRLPLVPSVTRAVLP AA LSA+YN+AV DGAKRG++VATYLP Sbjct: 162 RYEPVAERKAAEAWAALNRLPLVPSVTRAVLPAAASLSARYNTAVADGAKRGSAVATYLP 221 Query: 371 LVPTERIARVFXXXXXXXXXXXXPEMQPIPTQ 276 LVPTER++RVF PEMQPIP+Q Sbjct: 222 LVPTERLSRVFGYPLADAATSPAPEMQPIPSQ 253 Score = 25.8 bits (55), Expect(2) = 7e-27 Identities = 10/12 (83%), Positives = 12/12 (100%) Frame = -1 Query: 588 SRAEPKARDLYT 553 +RAEP+ARDLYT Sbjct: 150 ARAEPRARDLYT 161
>SRP_VITRI (Q9SW70) Stress-related protein| Length = 248 Score = 77.4 bits (189), Expect = 3e-14 Identities = 39/71 (54%), Positives = 48/71 (67%) Frame = -2 Query: 551 RYEPVXXXXXXXXXXALNRLPLVPSVTRAVLPTAAQLSAKYNSAVLDGAKRGNSVATYLP 372 +YEPV +LNRLPL P V + V+PTAA S KYN +V A+RG +VA YLP Sbjct: 158 KYEPVAEQYAVSAWRSLNRLPLFPQVAQVVVPTAAYWSEKYNQSVSYTAERGYTVALYLP 217 Query: 371 LVPTERIARVF 339 L+PTERIA+VF Sbjct: 218 LIPTERIAKVF 228
>SRP_PHAVU (Q41112) Stress-related protein (PvSRP)| Length = 167 Score = 72.0 bits (175), Expect = 1e-12 Identities = 35/75 (46%), Positives = 45/75 (60%) Frame = -2 Query: 563 TCTPRYEPVXXXXXXXXXXALNRLPLVPSVTRAVLPTAAQLSAKYNSAVLDGAKRGNSVA 384 T +YEP LN+LPL P V AVLP AA + KYN ++ A++G V+ Sbjct: 90 TVYSKYEPTAEQCAVSAWRKLNQLPLFPQVANAVLPKAAYCTEKYNEVIVSSAEKGYRVS 149 Query: 383 TYLPLVPTERIARVF 339 YLPLVPTE+IA+VF Sbjct: 150 AYLPLVPTEKIAKVF 164
>Y3550_ARATH (Q9MA63) Protein At3g05500| Length = 246 Score = 66.2 bits (160), Expect = 7e-11 Identities = 31/70 (44%), Positives = 43/70 (61%) Frame = -2 Query: 548 YEPVXXXXXXXXXXALNRLPLVPSVTRAVLPTAAQLSAKYNSAVLDGAKRGNSVATYLPL 369 YEP LN+LPL P + + +PTAA S KYN V+ A++G V +Y+PL Sbjct: 161 YEPKAEQCAVSAWKKLNQLPLFPRLAQVAVPTAAFCSEKYNDTVVKAAEKGYRVTSYMPL 220 Query: 368 VPTERIARVF 339 VPTERI+++F Sbjct: 221 VPTERISKIF 230
>SRPP_HEVBR (O82803) Small rubber particle protein (SRPP) (22 kDa rubber| particle protein) (22 kDa RPP) (Latex allergen Hev b 3) (27 kDa natural rubber allergen) Length = 204 Score = 63.5 bits (153), Expect = 4e-10 Identities = 32/69 (46%), Positives = 41/69 (59%) Frame = -2 Query: 545 EPVXXXXXXXXXXALNRLPLVPSVTRAVLPTAAQLSAKYNSAVLDGAKRGNSVATYLPLV 366 EP ALN+LPLVP V V+PTA S KYN V ++G V++YLPL+ Sbjct: 131 EPKAEQYAVITWRALNKLPLVPQVANVVVPTAVYFSEKYNDVVRGTTEQGYRVSSYLPLL 190 Query: 365 PTERIARVF 339 PTE+I +VF Sbjct: 191 PTEKITKVF 199
>Y2778_ARATH (O82246) Protein At2g47780| Length = 235 Score = 53.5 bits (127), Expect = 4e-07 Identities = 28/70 (40%), Positives = 36/70 (51%) Frame = -2 Query: 551 RYEPVXXXXXXXXXXALNRLPLVPSVTRAVLPTAAQLSAKYNSAVLDGAKRGNSVATYLP 372 +YEP LN+LPL P V V+PTA S KYN AV R A YLP Sbjct: 157 KYEPAAEYYAATLWRLLNQLPLFPEVAHLVIPTAFYWSEKYNDAVRYVGDRDYFGAEYLP 216 Query: 371 LVPTERIARV 342 ++P E+I+ + Sbjct: 217 MIPIEKISDI 226
>Y1736_ARATH (Q9FYF7) Protein At1g67360| Length = 240 Score = 41.6 bits (96), Expect = 0.002 Identities = 20/55 (36%), Positives = 30/55 (54%) Frame = -2 Query: 503 LNRLPLVPSVTRAVLPTAAQLSAKYNSAVLDGAKRGNSVATYLPLVPTERIARVF 339 LN+ + ++ LP AA S++YN V D G S+ YLPLVP + I + + Sbjct: 152 LNQYKPIHAMGDKALPVAAHFSSRYNDLVTDMTNMGYSLVGYLPLVPVDDIVKAY 206
>GA2L1_HUMAN (Q99501) GAS2-like protein 1 (Growth arrest-specific 2-like 1)| (GAS2-related protein on chromosome 22) (GAR22 protein) Length = 681 Score = 35.4 bits (80), Expect = 0.12 Identities = 32/81 (39%), Positives = 37/81 (45%), Gaps = 11/81 (13%) Frame = +2 Query: 323 RQPGRQKPLRCAPWGRVGGRWRQ-SCPA*HHQARQSCTWLRAVQLW----GGRHG-SPRG 484 R R + R P G GGR Q S P+ +AR +AV L G+H PRG Sbjct: 402 RSQSRDRLDRGRPRGAPGGRGAQLSVPSPARRARSQSREEQAVLLVRRDRDGQHSWVPRG 461 Query: 485 RAEGGSGR-----PRLRQPCA 532 R GGSGR PR R P A Sbjct: 462 RGSGGSGRSTPQTPRARSPAA 482
>IE63_HHV1E (P36295) Transcriptional regulator IE63 (VMW63) (ICP27)| Length = 511 Score = 34.3 bits (77), Expect = 0.27 Identities = 27/75 (36%), Positives = 31/75 (41%), Gaps = 9/75 (12%) Frame = +2 Query: 329 PGRQKPLRCAPWGRVGGRWRQSCPA*HHQ---ARQSCTWLRAVQLWGGRHGSPRGRAEGG 499 P +P + W R+G R R SC H AR +A GGR G RGR GG Sbjct: 94 PNDPQPAPHSVWSRLGAR-RPSCSPEQHGGKVARLQPPPTKAQPARGGRRGRRRGRGRGG 152 Query: 500 SGR------PRLRQP 526 G PR R P Sbjct: 153 PGAADGLSDPRRRAP 167
>IE63_HHV11 (P10238) Transcriptional regulator IE63 (VMW63) (ICP27)| Length = 512 Score = 34.3 bits (77), Expect = 0.27 Identities = 27/75 (36%), Positives = 31/75 (41%), Gaps = 9/75 (12%) Frame = +2 Query: 329 PGRQKPLRCAPWGRVGGRWRQSCPA*HHQ---ARQSCTWLRAVQLWGGRHGSPRGRAEGG 499 P +P + W R+G R R SC H AR +A GGR G RGR GG Sbjct: 94 PNDPQPAPHSVWSRLGAR-RPSCSPEQHGGKVARLQPPPTKAQPARGGRRGRRRGRGRGG 152 Query: 500 SGR------PRLRQP 526 G PR R P Sbjct: 153 PGAADGLSDPRRRAP 167
>SRPK1_HUMAN (Q96SB4) Serine/threonine-protein kinase SRPK1 (EC 2.7.11.1)| (Serine/arginine-rich protein-specific kinase 1) (SR-protein-specific kinase 1) (SFRS protein kinase 1) Length = 826 Score = 33.1 bits (74), Expect = 0.61 Identities = 20/39 (51%), Positives = 20/39 (51%), Gaps = 1/39 (2%) Frame = -1 Query: 552 PLRACGRAQGCRSLGRPEPPSARPLGDPCRPP-HSCTAL 439 P RA G QG GR PP ARPL P PP H AL Sbjct: 81 PARALGPLQGPALGGRRRPPPARPLTRPETPPAHPARAL 119
>RPOM_HUMAN (O00411) DNA-directed RNA polymerase, mitochondrial precursor (EC| 2.7.7.6) (MtRPOL) Length = 1230 Score = 32.0 bits (71), Expect = 1.4 Identities = 15/39 (38%), Positives = 19/39 (48%) Frame = -1 Query: 534 RAQGCRSLGRPEPPSARPLGDPCRPPHSCTALSQVQLCR 418 +A+GC LG P PPS P PHS + +L R Sbjct: 722 QAKGCPQLGVPAPPSEAPQPPEAHLPHSAAPARKAELRR 760
>KRA3_SHEEP (P02441) Keratin, high-sulfur matrix protein, IIIA3| Length = 131 Score = 31.2 bits (69), Expect = 2.3 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 4/49 (8%) Frame = -1 Query: 540 CGRAQGCRSLGRPE---PPSARPLGDPCRPPHSCTALS-QVQLCRA*WC 406 C R C+++ RP P RP+ +PCR P C S Q CR C Sbjct: 29 CCRPVSCQTVSRPVTFVPRCTRPICEPCRRPVCCDPCSLQEGCCRPITC 77
>ABCBA_HUMAN (Q9NRK6) ATP-binding cassette sub-family B member 10, mitochondrial| precursor (ATP-binding cassette transporter 10) (ABC transporter 10 protein) (Mitochondrial ATP-binding cassette 2) (M-ABC2) Length = 738 Score = 30.4 bits (67), Expect = 4.0 Identities = 31/85 (36%), Positives = 34/85 (40%), Gaps = 14/85 (16%) Frame = +2 Query: 305 LWQAQGRQPGRQKP---LRCAP-WGR-------VGG--RWRQSCPA*HHQARQSCTWL-R 442 +W A R PG P LR A WG VG RWR C A + L R Sbjct: 29 VWAAASRVPGSLSPFTGLRPARLWGAGPALLWGVGAARRWRSGCRGGGPGASRGVLGLAR 88 Query: 443 AVQLWGGRHGSPRGRAEGGSGRPRL 517 + LW GS R A G G PRL Sbjct: 89 LLGLWARGPGSCRCGAFAGPGAPRL 113
>SWI2_SCHPO (Q10668) Mating-type switching protein swi2| Length = 722 Score = 30.4 bits (67), Expect = 4.0 Identities = 17/51 (33%), Positives = 23/51 (45%) Frame = +3 Query: 81 QNKLKRKAGVAAQQQHSESPLYTGGYHSDHPHIIPLSTTSQTRHYNEILTP 233 +N K + V + S L G HS+H +II +T T NE TP Sbjct: 466 ENNSKNRTNVTKPNSYKNSVLSIGNNHSNHSNIIKPNTYKNTILSNENNTP 516
>PGBM_HUMAN (P98160) Basement membrane-specific heparan sulfate proteoglycan core| protein precursor (HSPG) (Perlecan) (PLC) Length = 4391 Score = 29.6 bits (65), Expect = 6.7 Identities = 23/62 (37%), Positives = 25/62 (40%), Gaps = 4/62 (6%) Frame = -1 Query: 483 PLGDPCRPPHS----CTALSQVQLCRA*WC*AGQLCRHLPPTRPHGAHRKGFCLPGCRPC 316 P+G C P S C A Q Q C+A G C H RPH H GC PC Sbjct: 1272 PIGCNCDPQGSVSSQCDAAGQCQ-CKAQV--EGLTCSHC---RPHHFHLSASNPDGCLPC 1325 Query: 315 AC 310 C Sbjct: 1326 FC 1327
>NPAS2_HUMAN (Q99743) Neuronal PAS domain protein 2 (Neuronal PAS2) (Member of| PAS protein 4) (MOP4) Length = 824 Score = 29.6 bits (65), Expect = 6.7 Identities = 13/28 (46%), Positives = 19/28 (67%) Frame = -1 Query: 516 SLGRPEPPSARPLGDPCRPPHSCTALSQ 433 +LG P+PP A+P P RPP ++LS+ Sbjct: 790 TLGYPQPPPAQP--QPLRPPRRVSSLSE 815
>CCMF_RHOCA (Q00500) Cytochrome c-type biogenesis protein ccl1| Length = 653 Score = 29.6 bits (65), Expect = 6.7 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = +2 Query: 287 WAASLELWQAQGRQPGRQKPLRCAPWGR 370 + A E+WQ GR PGR L A WG+ Sbjct: 462 FGALAEIWQRAGRTPGRILRLPRADWGK 489
>PRND_BOVIN (Q9GK16) Prion-like protein doppel precursor (PrPLP)| Length = 178 Score = 29.6 bits (65), Expect = 6.7 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Frame = -1 Query: 198 LWWIV-VLCVDGHCDIRLCRAATLNAAAVQQHLLCVLV 88 LW ++ LC HCD L R A L Q +LC+LV Sbjct: 134 LWQLIRELCSTKHCDFWLERGAGLRVTLDQPMMLCLLV 171
>LAMC1_DROME (P15215) Laminin gamma-1 chain precursor (Laminin B2 chain)| Length = 1639 Score = 29.3 bits (64), Expect = 8.8 Identities = 14/35 (40%), Positives = 15/35 (42%) Frame = -1 Query: 399 GQLCRHLPPTRPHGAHRKGFCLPGCRPCACHSSRD 295 GQ C P H R G +P C PC CH D Sbjct: 718 GQFCESCAPGYRHSPARGGPFMP-CIPCDCHGHAD 751
>LAMA5_HUMAN (O15230) Laminin alpha-5 chain precursor| Length = 3695 Score = 29.3 bits (64), Expect = 8.8 Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 2/54 (3%) Frame = -1 Query: 438 SQVQLCRA*WC*AGQLCRHLPPTRPHGAHR--KGFCLPGCRPCACHSSRDAAHP 283 S V+LC G C+ P G +R KG L C PC CH D P Sbjct: 1826 SNVELCLCPASYRGDSCQECAP----GFYRDVKGLFLGRCVPCQCHGHSDRCLP 1875 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 88,237,003 Number of Sequences: 219361 Number of extensions: 1863348 Number of successful extensions: 5909 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 5411 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5897 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5101629520 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
