| Clone Name | rbags4h14 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | SFMA_ECOLI (P0ABW5) Sfm fimbrial protein, A chain precursor (Typ... | 31 | 0.78 | 2 | SFMA_ECO57 (P0ABW6) Sfm fimbrial protein, A chain precursor (Typ... | 31 | 0.78 |
|---|
>SFMA_ECOLI (P0ABW5) Sfm fimbrial protein, A chain precursor (Type-1A pilin)| Length = 180 Score = 31.2 bits (69), Expect = 0.78 Identities = 16/40 (40%), Positives = 20/40 (50%) Frame = +2 Query: 59 KTDGNSXPTNMNQAXSDTIHIYSHRQRGTCDQAPXGKQNA 178 K DGNS TN N + +S R +GT A G+ NA Sbjct: 132 KPDGNSFSTNQNLIPGTNVLHFSARYKGTGTSASAGQANA 171
>SFMA_ECO57 (P0ABW6) Sfm fimbrial protein, A chain precursor (Type-1A pilin)| Length = 180 Score = 31.2 bits (69), Expect = 0.78 Identities = 16/40 (40%), Positives = 20/40 (50%) Frame = +2 Query: 59 KTDGNSXPTNMNQAXSDTIHIYSHRQRGTCDQAPXGKQNA 178 K DGNS TN N + +S R +GT A G+ NA Sbjct: 132 KPDGNSFSTNQNLIPGTNVLHFSARYKGTGTSASAGQANA 171 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 29,467,235 Number of Sequences: 219361 Number of extensions: 460795 Number of successful extensions: 896 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 883 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 896 length of database: 80,573,946 effective HSP length: 43 effective length of database: 71,141,423 effective search space used: 1707394152 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)