ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags4h02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RD22_ARATH (Q08298) Dehydration-responsive protein RD22 precursor 88 2e-17
2Y639_ARATH (O80760) Probable polygalacturonase non-catalytic sub... 70 6e-12
3GP1_LYCES (Q40161) Polygalacturonase-1 non-catalytic beta subuni... 68 2e-11
4GP3_LYCES (P93218) Polygalacturonase non-catalytic subunit AroGP... 67 4e-11
5GP2_LYCES (P93217) Polygalacturonase non-catalytic subunit AroGP... 67 5e-11
6JP650_ARATH (P92990) Probable polygalacturonase non-catalytic su... 66 9e-11
7JP630_ARATH (P92982) Probable polygalacturonase non-catalytic su... 63 6e-10
8EA92_VICFA (P21747) Embryonic abundant protein USP92 precursor 55 1e-07
9EA30_VICFA (P21745) Embryonic abundant protein VF30.1 precursor 55 1e-07
10SVF30_VICFA (P09059) Unknown seed protein 30.1 precursor (VF30.1) 52 2e-06
11EA87_VICFA (P21746) Embryonic abundant protein USP87 precursor 52 2e-06
12PTN22_MOUSE (P29352) Tyrosine-protein phosphatase non-receptor t... 32 1.1
13ZN689_RAT (Q99PJ7) Zinc finger protein 689 (Transcription factor... 32 1.4
14HKR2_HUMAN (P10073) Krueppel-related zinc finger protein 2 (HKR2... 30 5.2
15ZN671_HUMAN (Q8TAW3) Zinc finger protein 671 29 8.9

>RD22_ARATH (Q08298) Dehydration-responsive protein RD22 precursor|
          Length = 392

 Score = 87.8 bits (216), Expect = 2e-17
 Identities = 47/127 (37%), Positives = 67/127 (52%)
 Frame = -1

Query: 507 GRRNIRAFSAMDLPMDAPGTPALRGKYNVTAARKLSGSSSEVVTCHDLTYPYAVYYCHTS 328
           G+ ++RA S      +AP       KY + AA     S  + V CH   YP+AV+YCH +
Sbjct: 274 GKYHVRAVSTEVAKKNAP-----MQKYKIAAAGVKKLSDDKSVVCHKQKYPFAVFYCHKA 328

Query: 327 SPTAAYMVTLTSVEEDTSPATMEVMAVCHLDTSLWSPKNPFFELHKVGPGDVAVCHFLTK 148
             T  Y V L    E  +    + +AVCH +TS W+P +  F++ KV PG V VCHFL +
Sbjct: 329 MMTTVYAVPL----EGENGMRAKAVAVCHKNTSAWNPNHLAFKVLKVKPGTVPVCHFLPE 384

Query: 147 LSIIWVS 127
             ++W S
Sbjct: 385 THVVWFS 391



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>Y639_ARATH (O80760) Probable polygalacturonase non-catalytic subunit At1g60390|
           precursor (Aromatic-rich glycoprotein At1g60390)
          Length = 624

 Score = 69.7 bits (169), Expect = 6e-12
 Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
 Frame = -1

Query: 399 GSSSEVVTCHDLTYPYAVYYCHTSSPTAAYMVTLTSVEEDTSPATMEVM----AVCHLDT 232
           G  +  V+CH   YPY +YYCH+      Y   L        P ++E +    A+CH+DT
Sbjct: 534 GDVTRAVSCHQSLYPYLLYYCHSVPRVRVYETDLLD------PKSLEKINHGVAICHIDT 587

Query: 231 SLWSPKNPFFELHKVGPGDVAVCHFLTKLSIIWVSVD 121
           S WSP +  F     GPG + VCH++ +  + W  +D
Sbjct: 588 SAWSPSHGAFLALGSGPGQIEVCHWIFENDMTWNIID 624



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>GP1_LYCES (Q40161) Polygalacturonase-1 non-catalytic beta subunit precursor|
           (AroGP1) (Polygalacturonase converter) (PG converter)
          Length = 630

 Score = 68.2 bits (165), Expect = 2e-11
 Identities = 29/93 (31%), Positives = 48/93 (51%)
 Frame = -1

Query: 399 GSSSEVVTCHDLTYPYAVYYCHTSSPTAAYMVTLTSVEEDTSPATMEVMAVCHLDTSLWS 220
           G  ++ V+CH   YPY +YYCH+      Y   +  ++ ++       +A+CH+DTS W 
Sbjct: 540 GKVTKSVSCHQTLYPYLLYYCHSVPKVRVYEADI--LDPNSKVKINHGVAICHVDTSSWG 597

Query: 219 PKNPFFELHKVGPGDVAVCHFLTKLSIIWVSVD 121
           P +  F     GPG + VCH++ +  + W   D
Sbjct: 598 PSHGAFVALGSGPGKIEVCHWIFENDMTWAIAD 630



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>GP3_LYCES (P93218) Polygalacturonase non-catalytic subunit AroGP3 precursor|
          Length = 632

 Score = 67.0 bits (162), Expect = 4e-11
 Identities = 28/93 (30%), Positives = 49/93 (52%)
 Frame = -1

Query: 399 GSSSEVVTCHDLTYPYAVYYCHTSSPTAAYMVTLTSVEEDTSPATMEVMAVCHLDTSLWS 220
           G  ++ V+CH   YP  +YYCH+      Y   +  ++ ++       +A+CH+DTS W 
Sbjct: 542 GKVTKSVSCHQTLYPSLLYYCHSVPKVRVYEADI--LDPNSKAKINHGVAICHVDTSSWG 599

Query: 219 PKNPFFELHKVGPGDVAVCHFLTKLSIIWVSVD 121
           P++  F     GPG + VCH++ +  + W + D
Sbjct: 600 PRHGAFVALGSGPGKIEVCHWIFENDMTWATAD 632



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>GP2_LYCES (P93217) Polygalacturonase non-catalytic subunit AroGP2 precursor|
          Length = 629

 Score = 66.6 bits (161), Expect = 5e-11
 Identities = 28/93 (30%), Positives = 49/93 (52%)
 Frame = -1

Query: 399 GSSSEVVTCHDLTYPYAVYYCHTSSPTAAYMVTLTSVEEDTSPATMEVMAVCHLDTSLWS 220
           G  ++ V+CH   YP  +YYCH+      Y   +  ++ ++       +A+CH+DTS W 
Sbjct: 539 GKVTKSVSCHQTLYPSLLYYCHSVPKVRVYEADI--LDPNSKAKINHGVAICHVDTSSWG 596

Query: 219 PKNPFFELHKVGPGDVAVCHFLTKLSIIWVSVD 121
           P++  F     GPG + VCH++ +  + W + D
Sbjct: 597 PRHGAFIALGSGPGKIEVCHWIFENDMTWATAD 629



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>JP650_ARATH (P92990) Probable polygalacturonase non-catalytic subunit JP650|
           precursor (Aromatic-rich glycoprotein JP650)
          Length = 626

 Score = 65.9 bits (159), Expect = 9e-11
 Identities = 30/93 (32%), Positives = 47/93 (50%)
 Frame = -1

Query: 399 GSSSEVVTCHDLTYPYAVYYCHTSSPTAAYMVTLTSVEEDTSPATMEVMAVCHLDTSLWS 220
           G  ++ V+CH   YPY +YYCH+      Y   L  +E ++       +A+CH+DTS W 
Sbjct: 536 GKLTKAVSCHQSLYPYLLYYCHSVPKVRVYEADL--LELNSKKKINHGIAICHMDTSSWG 593

Query: 219 PKNPFFELHKVGPGDVAVCHFLTKLSIIWVSVD 121
           P +  F      PG + VCH++ +  + W   D
Sbjct: 594 PSHGAFLALGSKPGRIEVCHWIFENDMNWAIAD 626



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>JP630_ARATH (P92982) Probable polygalacturonase non-catalytic subunit JP630|
           precursor (Aromatic-rich glycoprotein JP630)
          Length = 622

 Score = 63.2 bits (152), Expect = 6e-10
 Identities = 29/93 (31%), Positives = 46/93 (49%)
 Frame = -1

Query: 399 GSSSEVVTCHDLTYPYAVYYCHTSSPTAAYMVTLTSVEEDTSPATMEVMAVCHLDTSLWS 220
           G  ++ V+CH   YPY +YYCH+      Y   L  ++  +       +A+CH+DTS W 
Sbjct: 532 GRVTKSVSCHQSLYPYLLYYCHSVPKVRVYESDL--LDPKSKAKINHGIAICHMDTSAWG 589

Query: 219 PKNPFFELHKVGPGDVAVCHFLTKLSIIWVSVD 121
             +  F L    PG + VCH++ +  + W   D
Sbjct: 590 ANHGAFMLLGSRPGQIEVCHWIFENDMNWAIAD 622



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>EA92_VICFA (P21747) Embryonic abundant protein USP92 precursor|
          Length = 268

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 33/101 (32%), Positives = 52/101 (51%)
 Frame = -1

Query: 432 KYNVTAARKLSGSSSEVVTCHDLTYPYAVYYCHTSSPTAAYMVTLTSVEEDTSPATMEVM 253
           +Y V   +K+  ++   V CH L +   V+ CH    T AY+V+L + +   + A    +
Sbjct: 165 QYVVEDVKKVGDNA---VMCHRLNFEKVVFNCHQVRETTAYVVSLVASDGTKTKA----L 217

Query: 252 AVCHLDTSLWSPKNPFFELHKVGPGDVAVCHFLTKLSIIWV 130
            VCH DT   +P+   +E  +V PG V VCHF+   +  WV
Sbjct: 218 TVCHHDTRGMNPE-LLYEALEVTPGTVPVCHFIGNKAAAWV 257



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>EA30_VICFA (P21745) Embryonic abundant protein VF30.1 precursor|
          Length = 268

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 33/101 (32%), Positives = 52/101 (51%)
 Frame = -1

Query: 432 KYNVTAARKLSGSSSEVVTCHDLTYPYAVYYCHTSSPTAAYMVTLTSVEEDTSPATMEVM 253
           +Y V   +K+  ++   V CH L +   V+ CH    T AY+V+L + +   + A    +
Sbjct: 165 QYVVEDVKKVGDNA---VMCHRLNFEKVVFNCHQVRDTTAYVVSLVASDGTKTKA----L 217

Query: 252 AVCHLDTSLWSPKNPFFELHKVGPGDVAVCHFLTKLSIIWV 130
            VCH DT   +P+   +E  +V PG V VCHF+   +  WV
Sbjct: 218 TVCHHDTRGMNPE-LLYEALEVTPGTVPVCHFIGNKAAAWV 257



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>SVF30_VICFA (P09059) Unknown seed protein 30.1 precursor (VF30.1)|
          Length = 268

 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 32/101 (31%), Positives = 51/101 (50%)
 Frame = -1

Query: 432 KYNVTAARKLSGSSSEVVTCHDLTYPYAVYYCHTSSPTAAYMVTLTSVEEDTSPATMEVM 253
           +Y V   +K+  ++   V CH L +   V+ CH    T AY+V+L + +   + A    +
Sbjct: 165 QYVVEDVKKVGDNA---VMCHRLNFEKVVFNCHQVRDTTAYVVSLVASDGTKTKA----L 217

Query: 252 AVCHLDTSLWSPKNPFFELHKVGPGDVAVCHFLTKLSIIWV 130
            VCH DT   +P+   +E  +V  G V VCHF+   +  WV
Sbjct: 218 TVCHHDTRGMNPE-LLYEALEVTLGTVPVCHFIGNKAAAWV 257



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>EA87_VICFA (P21746) Embryonic abundant protein USP87 precursor|
          Length = 268

 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 32/101 (31%), Positives = 51/101 (50%)
 Frame = -1

Query: 432 KYNVTAARKLSGSSSEVVTCHDLTYPYAVYYCHTSSPTAAYMVTLTSVEEDTSPATMEVM 253
           +Y V   +K+  ++   V CH L +   V+ CH    T AY+V+L + +   + A    +
Sbjct: 165 QYVVEDVKKVGDNA---VMCHRLNFEKVVFNCHQVRDTTAYVVSLVASDGTKTKA----L 217

Query: 252 AVCHLDTSLWSPKNPFFELHKVGPGDVAVCHFLTKLSIIWV 130
            VCH DT   +P+   +E  +V  G V VCHF+   +  WV
Sbjct: 218 TVCHHDTRGMNPE-LLYEALEVTLGTVPVCHFIGNKAAAWV 257



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>PTN22_MOUSE (P29352) Tyrosine-protein phosphatase non-receptor type 22 (EC|
           3.1.3.48) (Hematopoietic cell protein-tyrosine
           phosphatase 70Z-PEP)
          Length = 802

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +2

Query: 65  HKKTHLGQNLPFYSASTCPSTDTQMMLSLVRKWHTATSPGPTL-CSSKNGFF 217
           H  T L ++ P++S+S   S D++M   L  K   ATSPG  L  SS   FF
Sbjct: 525 HLYTSLAED-PYFSSSPPNSADSKMSFDLPEKQDGATSPGALLPASSTTSFF 575



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>ZN689_RAT (Q99PJ7) Zinc finger protein 689 (Transcription factor HIT-39)|
          Length = 500

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
 Frame = +3

Query: 348 PRKGRSGHGRSRPQMMTRRASVQP----SRCTYP*APVSLGHPWVDPWRRTHGC 497
           PRKG+ G   S+P+++ R+ S  P      CT+P  P    H      ++ + C
Sbjct: 126 PRKGKRGRKPSKPRLIARQTSGGPICPDCGCTFPDLPALESHKCAQNLKKPYPC 179



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>HKR2_HUMAN (P10073) Krueppel-related zinc finger protein 2 (HKR2 protein)|
           (Zinc finger protein 50) (Zinc finger and SCAN
           domain-containing protein 22) (Fragment)
          Length = 106

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
 Frame = +2

Query: 32  PIYLDTCMSSSHKKTHLGQNLP--FYSASTCPSTDTQMMLSLVRKWHTATSPGPTLCSSK 205
           P   + C  +  +++HL Q+     Y+   C  T +    SLV+ WH  T   P +C   
Sbjct: 6   PCTCEECGKAFGQRSHLVQHTSEKLYACQECGCTFSNNS-SLVKHWHVHTGEKPYMCGHC 64

Query: 206 NGFFGLHNDVS---RWHTAMTSIVAGE 277
              F   + ++   R HT     V GE
Sbjct: 65  GKCFRESSSLAKHQRVHTGEKPYVCGE 91



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>ZN671_HUMAN (Q8TAW3) Zinc finger protein 671|
          Length = 556

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +2

Query: 47  TCMSS--SHKKTHLGQNLPFYSASTCPSTDTQMMLSLVRKWHTATSPGPTLCS 199
           +C+S    H+K H G+    Y  S C    TQ   +L+R W   T   P +CS
Sbjct: 461 SCISKLIQHQKVHSGEKP--YECSKCGKAFTQRP-NLIRHWKVHTGERPYVCS 510


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,945,900
Number of Sequences: 219361
Number of extensions: 1605799
Number of successful extensions: 4546
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 4390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4533
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5158951200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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