ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags4g24 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BC045275.1| Xenopus laevis hypothetical protein MGC64474, mRNA (cDNA clone IMAGE:4684066), partial cds Length = 1811 Score = 432 bits (218), Expect = e-118 Identities = 249/264 (94%) Strand = Plus / Minus Query: 1 ctctacaggtggattttagtcaccaattgttnnnnnnnnncctatggcaactgttntcag 60 ||||||||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct: 1583 ctctacaggtggattttagtcaccaattgttaaaaaaaaacctatggcaactgttatcag 1524 Query: 61 ntttctggcattgngaaggaatctacctctttctgtctcccatagaattcaggtgcctga 120 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1523 atttctggcattgtgaaggaatctacctctttctgtctcccatagaattcaggtgcctga 1464 Query: 121 aatgcccantgctacttctacatgaaaatgctttagtgtacttttcaggccacaatcatc 180 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1463 aatgcccagggctacttctacatgaaaatgctttagtgtacttttcaggccacaatcatc 1404 Query: 181 tgccattactggtactttcaagcgaatgccattaaagtctatgagaagcantaaaacaca 240 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 1403 tgccattactggtactttcaagcgaatgccattaaagtctatgagaagcagtaaaacaca 1344 Query: 241 agatatccccaaaatgttttttct 264 |||||||||||||||||||||||| Sbjct: 1343 agatatccccaaaatgttttttct 1320
>gb|BC054975.1| Xenopus laevis hypothetical protein MGC64474, mRNA (cDNA clone MGC:64474 IMAGE:6881346), complete cds Length = 2110 Score = 420 bits (212), Expect = e-115 Identities = 240/254 (94%) Strand = Plus / Minus Query: 1 ctctacaggtggattttagtcaccaattgttnnnnnnnnncctatggcaactgttntcag 60 ||||||||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct: 1891 ctctacaggtggattttagtcaccaattgttaaaaaaaaacctatggcaactgttatcag 1832 Query: 61 ntttctggcattgngaaggaatctacctctttctgtctcccatagaattcaggtgcctga 120 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1831 atttctggcattgtgaaggaatctacctctttctgtctcccatagaattcaggtgcctga 1772 Query: 121 aatgcccantgctacttctacatgaaaatgctttagtgtacttttcaggccacaatcatc 180 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1771 aatgcccagtgctacttctacatgaaaatgctttagtgtacttttcaggccacaatcatc 1712 Query: 181 tgccattactggtactttcaagcgaatgccattaaagtctatgagaagcantaaaacaca 240 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 1711 tgccattactggtactttcaagcgaatgccattaaagtctatgagaagcagtaaaacaca 1652 Query: 241 agatatccccaaaa 254 |||||||||||||| Sbjct: 1651 agatatccccaaaa 1638
>gb|AC111718.10| Rattus norvegicus x BAC CH230-60P10 (Children's Hospital Oakland Research Institute) complete sequence Length = 157071 Score = 44.1 bits (22), Expect = 0.22 Identities = 25/26 (96%) Strand = Plus / Plus Query: 76 aaggaatctacctctttctgtctccc 101 ||||||||||||||| |||||||||| Sbjct: 126035 aaggaatctacctctctctgtctccc 126060
>gb|AC010057.7| Drosophila melanogaster 3L BAC RP98-26C18 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 192588 Score = 42.1 bits (21), Expect = 0.87 Identities = 21/21 (100%) Strand = Plus / Plus Query: 108 ttcaggtgcctgaaatgccca 128 ||||||||||||||||||||| Sbjct: 101989 ttcaggtgcctgaaatgccca 102009
>gb|AC091219.2| Drosophila melanogaster 3L BAC RP98-4C3 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 168047 Score = 42.1 bits (21), Expect = 0.87 Identities = 21/21 (100%) Strand = Plus / Plus Query: 108 ttcaggtgcctgaaatgccca 128 ||||||||||||||||||||| Sbjct: 141339 ttcaggtgcctgaaatgccca 141359
>emb|Z49207.1|CER07E3 Caenorhabditis elegans Cosmid R07E3, complete sequence Length = 39736 Score = 42.1 bits (21), Expect = 0.87 Identities = 21/21 (100%) Strand = Plus / Plus Query: 241 agatatccccaaaatgttttt 261 ||||||||||||||||||||| Sbjct: 24459 agatatccccaaaatgttttt 24479
>gb|AE003469.3| Drosophila melanogaster chromosome 3L, section 3 of 83 of the complete sequence Length = 286515 Score = 42.1 bits (21), Expect = 0.87 Identities = 21/21 (100%) Strand = Plus / Plus Query: 108 ttcaggtgcctgaaatgccca 128 ||||||||||||||||||||| Sbjct: 128018 ttcaggtgcctgaaatgccca 128038
>gb|AC126459.3| Mus musculus BAC clone RP23-181A8 from chromosome 9, complete sequence Length = 217068 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 atctacctctttctgtctcc 100 |||||||||||||||||||| Sbjct: 17643 atctacctctttctgtctcc 17624
>emb|AL161800.10| Human DNA sequence from clone RP11-318C17 on chromosome 20 Contains the 3' end fo the C20orf133 gene and the 3' end of a novel gene, complete sequence Length = 43741 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 gaatgccattaaagtctatg 223 |||||||||||||||||||| Sbjct: 40589 gaatgccattaaagtctatg 40570
>emb|BX294175.5| Zebrafish DNA sequence from clone DKEY-281I8 in linkage group 1, complete sequence Length = 165355 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 acttttcaggccacaatcat 179 |||||||||||||||||||| Sbjct: 131676 acttttcaggccacaatcat 131695
>gb|AY106098.1| Zea mays PCO073295 mRNA sequence Length = 523 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 233 aaaacacaagatatccccaa 252 |||||||||||||||||||| Sbjct: 293 aaaacacaagatatccccaa 312
>gb|AC148328.3| Mus musculus BAC clone RP24-329C11 from 9, complete sequence Length = 167164 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 atctacctctttctgtctcc 100 |||||||||||||||||||| Sbjct: 27550 atctacctctttctgtctcc 27569
>dbj|AP006130.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT36O13, TM0226, complete sequence Length = 140838 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 104 agaattcaggtgcctgaaat 123 |||||||||||||||||||| Sbjct: 91214 agaattcaggtgcctgaaat 91195 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,153,311 Number of Sequences: 3902068 Number of extensions: 2153311 Number of successful extensions: 40365 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 40345 Number of HSP's gapped (non-prelim): 20 length of query: 264 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 242 effective length of database: 17,147,199,772 effective search space: 4149622344824 effective search space used: 4149622344824 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
