ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags4g23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF212298.1| Xenopus laevis septin A (XlSeptA) mRNA, complete cds 38 1.6
2gb|AC080158.4| Mus musculus strain C57BL6/J chromosome 5 clone R... 36 6.4
3gb|AC083890.4| Mus musculus strain C57BL6/J chromosome 5 clone R... 36 6.4
4gb|AC135464.13| Medicago truncatula clone mth2-17k21, complete s... 36 6.4

>gb|AF212298.1| Xenopus laevis septin A (XlSeptA) mRNA, complete cds
          Length = 2479

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                       
Query: 1    aaaaaagatacacgcttgtcataatgt 27
            ||||||||||||||||| ||| |||||
Sbjct: 2230 aaaaaagatacacgcttatcaaaatgt 2204



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>gb|AC080158.4| Mus musculus strain C57BL6/J chromosome 5 clone RP23-311J12, complete
            sequence
          Length = 163722

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 7    gatacacgcttgtcataa 24
            ||||||||||||||||||
Sbjct: 1808 gatacacgcttgtcataa 1825



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>gb|AC083890.4| Mus musculus strain C57BL6/J chromosome 5 clone RP23-284P20, complete
              sequence
          Length = 203967

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 7      gatacacgcttgtcataa 24
              ||||||||||||||||||
Sbjct: 177532 gatacacgcttgtcataa 177549



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>gb|AC135464.13| Medicago truncatula clone mth2-17k21, complete sequence
          Length = 105376

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 3     aaaagatacacgcttgtc 20
             ||||||||||||||||||
Sbjct: 85751 aaaagatacacgcttgtc 85768


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 128,056
Number of Sequences: 3902068
Number of extensions: 128056
Number of successful extensions: 36228
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36223
Number of HSP's gapped (non-prelim): 5
length of query: 49
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 29
effective length of database: 17,155,003,908
effective search space: 497495113332
effective search space used: 497495113332
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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