>TIF1B_HUMAN (Q13263) Transcription intermediary factor 1-beta (TIF1-beta)|
           (Tripartite motif protein 28) (Nuclear corepressor
           KAP-1) (KRAB-associated protein 1) (KAP-1)
           (KRAB-interacting protein 1) (KRIP-1) (RING finger
           protein 96)
          Length = 835

 Score = 75.1 bits (183), Expect = 5e-14
 Identities = 38/72 (52%), Positives = 48/72 (66%)
 Frame = -2

Query: 222 IDLTLIXAKLQQXRXPSYITPEAFVRXVWVMFRNVSKLAEXKAVVQSXIELQSFFEARLN 43
           +DLTLI A+LQ+   P Y +P+ F + V  MF+  +KL E KA VQS I LQ FFE R+N
Sbjct: 738 LDLTLIRARLQEKLSPPYSSPQEFAQDVGRMFKQFNKLTEDKADVQSIIGLQRFFETRMN 797

Query: 42  HLFGDRKFSCLL 7
             FGD KFS +L
Sbjct: 798 EAFGDTKFSAVL 809

>TIF1B_MOUSE (Q62318) Transcription intermediary factor 1-beta (TIF1-beta)|
           (Tripartite motif protein 28) (KRAB-A-interacting
           protein) (KRIP-1)
          Length = 834

 Score = 74.7 bits (182), Expect = 6e-14
 Identities = 38/72 (52%), Positives = 48/72 (66%)
 Frame = -2

Query: 222 IDLTLIXAKLQQXRXPSYITPEAFVRXVWVMFRNVSKLAEXKAVVQSXIELQSFFEARLN 43
           +DLTLI A+LQ+   P Y +P+ F + V  MF+  +KL E KA VQS I LQ FFE R+N
Sbjct: 738 LDLTLIRARLQEKLSPPYSSPQEFAQDVGRMFKQFNKLTEDKADVQSIIGLQRFFETRMN 797

Query: 42  HLFGDRKFSCLL 7
             FGD KFS +L
Sbjct: 798 DAFGDTKFSAVL 809

>TIF1G_MOUSE (Q99PP7) Transcription intermediary factor 1-gamma (TIF1-gamma)|
            (Tripartite motif protein 33)
          Length = 1142

 Score = 38.5 bits (88), Expect = 0.005
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 18/89 (20%)
 Frame = -2

Query: 222  IDLTLIXAKLQQXRXPSYITPEAFVRXVWVMFRNVSKLAEXKAVVQSXIELQS------- 64
            +DL+ +  KLQ+     Y  P+ FV  V ++F+N  +  E   VVQ   + Q        
Sbjct: 1016 MDLSTVKKKLQKKHSQHYQIPDDFVADVRLIFKNCERFNEMMKVVQVYADTQEINLKGDS 1075

Query: 63   -----------FFEARLNHLFGDRKFSCL 10
                       +FE +L+ ++ DR F+ L
Sbjct: 1076 EVAKAGKAVALYFEDKLSEIYSDRTFTPL 1104

>TRI66_HUMAN (O15016) Tripartite motif protein 66|
          Length = 1214

 Score = 38.5 bits (88), Expect = 0.005
 Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
 Frame = -2

Query: 222  IDLTLIXAKLQQXRXPSYITPEAFVRXVWVMFRNVSKL-AEXKAVVQSXIELQSFFEARL 46
            +DL++I  KLQ+     Y TPE  V  V +MF N +K       V ++   L+ FFE  L
Sbjct: 1083 MDLSIIRRKLQKKDPAHYTTPEEVVSDVRLMFWNCAKFNYPDSEVAEAGRCLEVFFEGWL 1142

Query: 45   NHLFGDRKFS 16
              ++ +++F+
Sbjct: 1143 KEIYPEKRFA 1152

>TRI66_MOUSE (Q924W6) Tripartite motif protein 66|
          Length = 1209

 Score = 38.1 bits (87), Expect = 0.006
 Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
 Frame = -2

Query: 222  IDLTLIXAKLQQXRXPSYITPEAFVRXVWVMFRNVSKL-AEXKAVVQSXIELQSFFEARL 46
            +DL++I  KLQ+     Y TPE  V  V +MF N +K       V ++   L+ FFE  L
Sbjct: 1078 MDLSIIRRKLQKKDPAHYTTPEEVVSDVRLMFWNCAKFNYPDSEVAEAGRCLEVFFEGWL 1137

Query: 45   NHLFGDRKFS 16
              ++ D+ F+
Sbjct: 1138 KEIYPDKCFA 1147

>TIF1G_HUMAN (Q9UPN9) Transcription intermediary factor 1-gamma (TIF1-gamma)|
            (RET-fused gene 7 protein) (Rfg7 protein) (Tripartite
            motif protein 33)
          Length = 1127

 Score = 38.1 bits (87), Expect = 0.006
 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 18/89 (20%)
 Frame = -2

Query: 222  IDLTLIXAKLQQXRXPSYITPEAFVRXVWVMFRNVSKLAEXKAVVQSXIELQS------- 64
            +DL+ +  KLQ+     Y  P+ FV  V ++F+N  +  E   VVQ   + Q        
Sbjct: 1001 MDLSTVKKKLQKKHSQHYQIPDDFVADVRLIFKNCERFNEMMKVVQVYADTQEINLKADS 1060

Query: 63   -----------FFEARLNHLFGDRKFSCL 10
                       +FE +L  ++ DR F+ L
Sbjct: 1061 EVAQAGKAVALYFEDKLTEIYSDRTFAPL 1089

>PARN_ARATH (Q9LG26) Poly(A)-specific ribonuclease PARN (EC 3.1.13.4)|
           (Polyadenylate-specific ribonuclease) (AtPARN)
          Length = 689

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 110 LQRXKRWYSRXLSCSLSSKQDSTIFLETASS 18
           ++R KRW  R L CS SS    T+   TA+S
Sbjct: 1   MRRHKRWPLRSLVCSFSSSAAETVTTSTAAS 31

>YR096_MIMIV (Q5UPH4) Putative ankyrin repeat protein R96|
          Length = 1015

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 16   GELAVSKKMVESCFEERLQLNXRLYHR 96
            GEL  + +MV+ CFE  L  +  LYHR
Sbjct: 970  GELNTNGRMVKGCFEYFLNCHKSLYHR 996

>YR748_MIMIV (Q5UP04) Putative ankyrin repeat protein R748|
          Length = 877

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 16  GELAVSKKMVESCFEERLQLNXRLYHR 96
           GEL ++ +M+  CFE  +  N  ++HR
Sbjct: 826 GELLINGEMIRGCFEYFINSNNSVFHR 852


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,423,441
Number of Sequences: 219361
Number of extensions: 323251
Number of successful extensions: 717
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 80,573,946
effective HSP length: 49
effective length of database: 69,825,257
effective search space used: 1675806168
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)