>ATM_SCHPO (O74630) Serine/threonine-protein kinase tel1 (EC 2.7.11.1)|
           (DNA-damage checkpoint kinase tel1) (Telomere length
           regulation protein 1) (ATM homolog)
          Length = 2812

 Score = 33.1 bits (74), Expect = 0.41
 Identities = 26/80 (32%), Positives = 38/80 (47%)
 Frame = -2

Query: 431 QSAEMNTVSSEDNVAPAEGPAESQEQREELSADKIRDVIAPVKKSINQLIKSQGRSVWWL 252
           Q+ E  +++ E  V+ +E    SQ+  +E+S  K  DVI  VK+ + +LI      V W 
Sbjct: 159 QAIEKLSIAEETYVSDSEEEPISQKNYQEISIWKSHDVIR-VKQEVVELIYVMRSLVQWY 217

Query: 251 AYIAVVTSWPLLGTLGFFLY 192
           A      S  LL    FF Y
Sbjct: 218 AAPINFVSEQLLKFFEFFFY 237

>PNP_BACSU (P50849) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)|
           (Polynucleotide phosphorylase) (PNPase) (Vegetative
           protein 15) (VEG15)
          Length = 704

 Score = 32.0 bits (71), Expect = 0.92
 Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 13/84 (15%)
 Frame = -2

Query: 482 KVDVQQTGITRGLHDES-QSAEMNTVSSEDNVAPAEGPAESQEQREELSA---------- 336
           ++D++  G++R + +E+ Q A+   +   +++      A   E R+ELS           
Sbjct: 506 QMDIKIEGLSREILEEALQQAKKGRMEILNSML-----ATLSESRKELSRYAPKILTMTI 560

Query: 335 --DKIRDVIAPVKKSINQLIKSQG 270
             DKIRDVI P  K IN++I+  G
Sbjct: 561 NPDKIRDVIGPSGKQINKIIEETG 584

>MEU15_SCHPO (Q96WS6) Meiotic expression up-regulated protein 15|
          Length = 150

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -2

Query: 317 IAPVKKSINQLIKSQGRSVWWLAYIAVV-TSWPLLGTLGFFLYRKKFRNSSPAKWL 153
           + P    + ++ K    S WWL  IA++ T W LLG L  F   + +    P KW+
Sbjct: 20  VKPQVLPLEEIKKIYKISYWWLCSIALIQTWWVLLGLLPIFFALEHY--EVPYKWI 73

>DAB_DROME (P98081) Protein disabled|
          Length = 2224

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = -2

Query: 464  TGITRGLHDESQSAEMNTVSSEDNVAPAEGPAESQEQREELSADKIR-DVIAPVKKSINQ 288
            + +T G +DE + A+    SS D+      P   Q+Q E+LS    + D  AP  + + Q
Sbjct: 1234 SALTVGDYDEDEDADAGGESSLDSNEKDAEPVSGQDQYEKLSTSTQQLDAAAPALEDVQQ 1293

Query: 287  L 285
            L
Sbjct: 1294 L 1294

>HDAC7_MOUSE (Q8C2B3) Histone deacetylase 7a (HD7a)|
          Length = 938

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
 Frame = -2

Query: 449 GLHDESQSAEMNTVSSEDNVAPAEGPAESQEQREELSADKI-RDVIAP--VKKSINQLI 282
           GLH + +SAE   +S +  +   +G  + QE R+ L+ DK  R  +A   VK+ + ++I
Sbjct: 58  GLHQQQRSAEPMRLSMDPPMPELQGGQQEQELRQLLNKDKSKRSAVASSVVKQKLAEVI 116

>GBRA3_RAT (P20236) Gamma-aminobutyric-acid receptor alpha-3 subunit precursor|
           (GABA(A) receptor)
          Length = 493

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 19/79 (24%), Positives = 34/79 (43%)
 Frame = -2

Query: 479 VDVQQTGITRGLHDESQSAEMNTVSSEDNVAPAEGPAESQEQREELSADKIRDVIAPVKK 300
           +D + + I++     S S+    ++S       + PAE++        DKI  +I PV  
Sbjct: 409 LDTEFSTISKAAAAPSASSTPTVIASPKTTYVQDSPAETKTYNSVSKVDKISRIIFPVLF 468

Query: 299 SINQLIKSQGRSVWWLAYI 243
           +I  L       V+W  Y+
Sbjct: 469 AIFNL-------VYWATYV 480

>DPO3B_BUCBP (Q89B36) DNA polymerase III beta subunit (EC 2.7.7.7)|
          Length = 371

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 267 PPLGFNELVNGFLNGSNDISDFICRELFSLLLRLCRAF 380
           P L  +E  N F+   ND+ D +C   FS+ ++  R F
Sbjct: 117 PNLKISENQNNFVISQNDLKDVLCATYFSMAIQDLRNF 154


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,636,392
Number of Sequences: 219361
Number of extensions: 1075860
Number of successful extensions: 2988
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2986
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3465624120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)