ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags3p18 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_475282.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1746 Score = 101 bits (51), Expect = 2e-18 Identities = 138/167 (82%) Strand = Plus / Minus Query: 170 aagaattcctgaacttcttcctatacaagaaaaaacctagggtgccgagcaagggccaag 229 |||||||||||||||| |||||| |||||| |||||| |||| || || || ||||||| Sbjct: 1726 aagaattcctgaactttttcctaaacaagataaaacccagggcaccaaggaaaggccaag 1667 Query: 230 atgtcaccacggcaatgtaagcaagccaccagactgacctcccctgggatttaatgagct 289 |||| || | |||||||||| |||| |||| || || |||||||| ||| |||||||| Sbjct: 1666 atgttacaaaagcaatgtaagtaagcaaccaaacagatctcccctgcgatcgaatgagct 1607 Query: 290 ggttaatggatttcttaacgggagcaatgacatctcggattttatct 336 | ||||||||| |||| || |||||||| |||| ||||||||||| Sbjct: 1606 gattaatggatatctttacaggagcaatagcatcctggattttatct 1560
>gb|AC108502.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1378_A04, complete sequence Length = 103458 Score = 101 bits (51), Expect = 2e-18 Identities = 138/167 (82%) Strand = Plus / Plus Query: 170 aagaattcctgaacttcttcctatacaagaaaaaacctagggtgccgagcaagggccaag 229 |||||||||||||||| |||||| |||||| |||||| |||| || || || ||||||| Sbjct: 79266 aagaattcctgaactttttcctaaacaagataaaacccagggcaccaaggaaaggccaag 79325 Query: 230 atgtcaccacggcaatgtaagcaagccaccagactgacctcccctgggatttaatgagct 289 |||| || | |||||||||| |||| |||| || || |||||||| ||| |||||||| Sbjct: 79326 atgttacaaaagcaatgtaagtaagcaaccaaacagatctcccctgcgatcgaatgagct 79385 Query: 290 ggttaatggatttcttaacgggagcaatgacatctcggattttatct 336 | ||||||||| |||| || |||||||| |||| ||||||||||| Sbjct: 79386 gattaatggatatctttacaggagcaatagcatcctggattttatct 79432
>gb|AC105769.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1301_G07, complete sequence Length = 106166 Score = 101 bits (51), Expect = 2e-18 Identities = 138/167 (82%) Strand = Plus / Plus Query: 170 aagaattcctgaacttcttcctatacaagaaaaaacctagggtgccgagcaagggccaag 229 |||||||||||||||| |||||| |||||| |||||| |||| || || || ||||||| Sbjct: 42753 aagaattcctgaactttttcctaaacaagataaaacccagggcaccaaggaaaggccaag 42812 Query: 230 atgtcaccacggcaatgtaagcaagccaccagactgacctcccctgggatttaatgagct 289 |||| || | |||||||||| |||| |||| || || |||||||| ||| |||||||| Sbjct: 42813 atgttacaaaagcaatgtaagtaagcaaccaaacagatctcccctgcgatcgaatgagct 42872 Query: 290 ggttaatggatttcttaacgggagcaatgacatctcggattttatct 336 | ||||||||| |||| || |||||||| |||| ||||||||||| Sbjct: 42873 gattaatggatatctttacaggagcaatagcatcctggattttatct 42919
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 101 bits (51), Expect = 2e-18 Identities = 138/167 (82%) Strand = Plus / Plus Query: 170 aagaattcctgaacttcttcctatacaagaaaaaacctagggtgccgagcaagggccaag 229 |||||||||||||||| |||||| |||||| |||||| |||| || || || ||||||| Sbjct: 21063888 aagaattcctgaactttttcctaaacaagataaaacccagggcaccaaggaaaggccaag 21063947 Query: 230 atgtcaccacggcaatgtaagcaagccaccagactgacctcccctgggatttaatgagct 289 |||| || | |||||||||| |||| |||| || || |||||||| ||| |||||||| Sbjct: 21063948 atgttacaaaagcaatgtaagtaagcaaccaaacagatctcccctgcgatcgaatgagct 21064007 Query: 290 ggttaatggatttcttaacgggagcaatgacatctcggattttatct 336 | ||||||||| |||| || |||||||| |||| ||||||||||| Sbjct: 21064008 gattaatggatatctttacaggagcaatagcatcctggattttatct 21064054
>dbj|AK102235.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033088B21, full insert sequence Length = 2007 Score = 101 bits (51), Expect = 2e-18 Identities = 138/167 (82%) Strand = Plus / Minus Query: 170 aagaattcctgaacttcttcctatacaagaaaaaacctagggtgccgagcaagggccaag 229 |||||||||||||||| |||||| |||||| |||||| |||| || || || ||||||| Sbjct: 1795 aagaattcctgaactttttcctaaacaagataaaacccagggcaccaaggaaaggccaag 1736 Query: 230 atgtcaccacggcaatgtaagcaagccaccagactgacctcccctgggatttaatgagct 289 |||| || | |||||||||| |||| |||| || || |||||||| ||| |||||||| Sbjct: 1735 atgttacaaaagcaatgtaagtaagcaaccaaacagatctcccctgcgatcgaatgagct 1676 Query: 290 ggttaatggatttcttaacgggagcaatgacatctcggattttatct 336 | ||||||||| |||| || |||||||| |||| ||||||||||| Sbjct: 1675 gattaatggatatctttacaggagcaatagcatcctggattttatct 1629
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 52.0 bits (26), Expect = 0.002 Identities = 65/78 (83%) Strand = Plus / Minus Query: 241 gcaatgtaagcaagccaccagactgacctcccctgggatttaatgagctggttaatggat 300 ||||| ||||||||| ||||||||||| | |||||| | | |||| ||||| |||||| Sbjct: 37763477 gcaatataagcaagcaaccagactgacttaccctggtaccgagtgagttggtttatggat 37763418 Query: 301 ttcttaacgggagcaatg 318 ||||||| ||||||||| Sbjct: 37763417 ctcttaactggagcaatg 37763400
>dbj|AP003235.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0039A07 Length = 148892 Score = 52.0 bits (26), Expect = 0.002 Identities = 65/78 (83%) Strand = Plus / Minus Query: 241 gcaatgtaagcaagccaccagactgacctcccctgggatttaatgagctggttaatggat 300 ||||| ||||||||| ||||||||||| | |||||| | | |||| ||||| |||||| Sbjct: 91778 gcaatataagcaagcaaccagactgacttaccctggtaccgagtgagttggtttatggat 91719 Query: 301 ttcttaacgggagcaatg 318 ||||||| ||||||||| Sbjct: 91718 ctcttaactggagcaatg 91701
>dbj|AK064743.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-120-E01, full insert sequence Length = 2017 Score = 52.0 bits (26), Expect = 0.002 Identities = 65/78 (83%) Strand = Plus / Minus Query: 241 gcaatgtaagcaagccaccagactgacctcccctgggatttaatgagctggttaatggat 300 ||||| ||||||||| ||||||||||| | |||||| | | |||| ||||| |||||| Sbjct: 1833 gcaatataagcaagcaaccagactgacttaccctggtaccgagtgagttggtttatggat 1774 Query: 301 ttcttaacgggagcaatg 318 ||||||| ||||||||| Sbjct: 1773 ctcttaactggagcaatg 1756
>dbj|AP003566.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBb0008G24 Length = 152736 Score = 52.0 bits (26), Expect = 0.002 Identities = 65/78 (83%) Strand = Plus / Minus Query: 241 gcaatgtaagcaagccaccagactgacctcccctgggatttaatgagctggttaatggat 300 ||||| ||||||||| ||||||||||| | |||||| | | |||| ||||| |||||| Sbjct: 22725 gcaatataagcaagcaaccagactgacttaccctggtaccgagtgagttggtttatggat 22666 Query: 301 ttcttaacgggagcaatg 318 ||||||| ||||||||| Sbjct: 22665 ctcttaactggagcaatg 22648
>gb|AY108408.1| Zea mays PCO100871 mRNA sequence Length = 1119 Score = 48.1 bits (24), Expect = 0.027 Identities = 30/32 (93%) Strand = Plus / Minus Query: 241 gcaatgtaagcaagccaccagactgacctccc 272 |||||||| |||||| |||||||||||||||| Sbjct: 750 gcaatgtaggcaagcaaccagactgacctccc 719
>gb|AC091152.18| Homo sapiens chromosome 17, clone RP11-1072C15, complete sequence Length = 181835 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 29 tcttttattatttctttcagca 50 |||||||||||||||||||||| Sbjct: 156790 tcttttattatttctttcagca 156811
>gb|AC097264.4| Pan troglodytes BAC RP43-175I2 (Roswell Park Cancer Institute Male Chimpanzee BAC Library) complete sequence Length = 173720 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 29 tcttttattatttctttcagca 50 |||||||||||||||||||||| Sbjct: 41271 tcttttattatttctttcagca 41250
>gb|AC132625.3| Mus musculus BAC clone RP23-101M7 from 1, complete sequence Length = 183691 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Plus Query: 99 attacaagcaaaacaaatttgtgtag 124 |||||||||||| ||||||||||||| Sbjct: 89699 attacaagcaaatcaaatttgtgtag 89724
>gb|AC167815.3| Mus musculus BAC clone RP23-463H10 from chromosome 5, complete sequence Length = 198336 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 338 cagagagctcttctcgctgct 358 ||||||||||||||||||||| Sbjct: 130669 cagagagctcttctcgctgct 130649
>gb|AC161280.2| Pan troglodytes BAC clone CH251-392H4 from chromosome 7, complete sequence Length = 190939 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 136 aatttctagcttcttaacaac 156 ||||||||||||||||||||| Sbjct: 85715 aatttctagcttcttaacaac 85735
>gb|AC161123.3| Pan troglodytes BAC clone CH251-618D5 from chromosome 7, complete sequence Length = 190856 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 136 aatttctagcttcttaacaac 156 ||||||||||||||||||||| Sbjct: 150637 aatttctagcttcttaacaac 150657
>gb|AC116364.2| Homo sapiens chromosome 5 clone RP11-767I1, complete sequence Length = 188887 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 32 tttattatttctttcagcaatgatg 56 |||| |||||||||||||||||||| Sbjct: 45462 tttagtatttctttcagcaatgatg 45438
>gb|AC026442.3| Homo sapiens chromosome 5 clone CTD-2291A17, complete sequence Length = 141154 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 29 tcttttattatttctttcagcaatg 53 |||||||| |||||||||||||||| Sbjct: 49268 tcttttatgatttctttcagcaatg 49244
>gb|AC092331.2| Homo sapiens chromosome 5 clone RP11-163B12, complete sequence Length = 162153 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 32 tttattatttctttcagcaatgatg 56 |||| |||||||||||||||||||| Sbjct: 151494 tttagtatttctttcagcaatgatg 151518
>gb|AC093745.3| Homo sapiens BAC clone RP11-25B15 from 4, complete sequence Length = 166191 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 27 gatcttttattatttctttcagcaatgat 55 |||||||||| ||||||||||||||||| Sbjct: 106648 gatcttttatattttctttcagcaatgat 106676
>gb|AC092598.2| Homo sapiens BAC clone RP11-114B11 from 2, complete sequence Length = 164798 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 29 tcttttattatttctttcagcaatg 53 |||||||| |||||||||||||||| Sbjct: 115587 tcttttatgatttctttcagcaatg 115611
>emb|BX000344.15| Mouse DNA sequence from clone RP24-88L6 on chromosome 2, complete sequence Length = 118767 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 108 aaaacaaatttgtgtaggcaaacat 132 |||||||||||||||||| |||||| Sbjct: 3988 aaaacaaatttgtgtaggaaaacat 3964
>gb|AE000657.1| Aquifex aeolicus VF5, complete genome Length = 1551335 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 171 agaattcctgaacttcttcct 191 ||||||||||||||||||||| Sbjct: 226511 agaattcctgaacttcttcct 226531
>gb|AC092956.5| Homo sapiens 3 BAC RP11-648O5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 194510 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 29 tcttttattatttctttcagcaatg 53 ||||||| ||||||||||||||||| Sbjct: 184397 tcttttactatttctttcagcaatg 184373
>gb|AC134046.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0040G18, complete sequence Length = 172281 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 atcttttattatttctttca 47 |||||||||||||||||||| Sbjct: 58053 atcttttattatttctttca 58034
>gb|AC125012.12| Mus musculus chromosome 7, clone RP24-143K11, complete sequence Length = 141809 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 445 aaccctcttgtgatcccagt 464 |||||||||||||||||||| Sbjct: 12023 aaccctcttgtgatcccagt 12004
>gb|AC079277.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-65N7, complete sequence Length = 190328 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 220 aagggccaagatgtcaccacggcaatgt 247 ||||||||||||||||||| || ||||| Sbjct: 43885 aagggccaagatgtcaccaagggaatgt 43912
>gb|AC146436.4| Pan troglodytes BAC clone RP43-16B7 from 7, complete sequence Length = 154982 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 tattatttctttcagcaatg 53 |||||||||||||||||||| Sbjct: 48598 tattatttctttcagcaatg 48579
>gb|AC163222.4| Mus musculus chromosome 7, clone RP24-157O12, complete sequence Length = 180557 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 445 aaccctcttgtgatcccagt 464 |||||||||||||||||||| Sbjct: 94255 aaccctcttgtgatcccagt 94236
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 aagaattttacacattacaa 105 |||||||||||||||||||| Sbjct: 18284740 aagaattttacacattacaa 18284759
>gb|AC167711.1| Medicago truncatula chromosome 7 BAC clone mth2-167p21, complete sequence Length = 132340 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 aatgatgcacaaatatgtgg 69 |||||||||||||||||||| Sbjct: 45299 aatgatgcacaaatatgtgg 45318
>gb|AC106887.3| Oryza sativa chromosome 3 BAC OSJNBa0054H04 genomic sequence, complete sequence Length = 159579 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 aagaattttacacattacaa 105 |||||||||||||||||||| Sbjct: 51171 aagaattttacacattacaa 51190
>emb|AJ496734.1|TNI496734 Tetraodon nigroviridis DNA and transposon Zebulon Length = 12339 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 agcaaaacaaatttgtgtag 124 |||||||||||||||||||| Sbjct: 7942 agcaaaacaaatttgtgtag 7923
>emb|AL157395.17| Human DNA sequence from clone RP11-414H17 on chromosome 10 Contains the 5' end of the IL2RA gene for interleukin 2 receptor, alpha (CD25,IL2R,TCGFR), a ribosomal protein L32 (RPL32) pseudogene, the gene for splicing factor (45kD) (SPF45)(MGC14439), the 5' end of the PFKFB3 gene for 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3, four novel genes and five CpG islands, complete sequence Length = 174839 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 474 atcaaccttgccatcactgc 493 |||||||||||||||||||| Sbjct: 161183 atcaaccttgccatcactgc 161164
>gb|AC145982.2| Pan troglodytes BAC clone RP43-13J3 from 7, complete sequence Length = 141213 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 aagaattttacacattacaa 105 |||||||||||||||||||| Sbjct: 1256 aagaattttacacattacaa 1237
>gb|AC091650.4| Homo sapiens BAC clone RP13-496E15 from 7, complete sequence Length = 45819 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 tattatttctttcagcaatg 53 |||||||||||||||||||| Sbjct: 37645 tattatttctttcagcaatg 37664
>gb|AC145768.1| Pan troglodytes BAC clone RP43-5G4 from 7, complete sequence Length = 154325 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 tattatttctttcagcaatg 53 |||||||||||||||||||| Sbjct: 122554 tattatttctttcagcaatg 122573
>emb|AL590731.12| Human DNA sequence from clone RP11-149M6 on chromosome 6, complete sequence Length = 149389 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 tattatttctttcagcaatg 53 |||||||||||||||||||| Sbjct: 4398 tattatttctttcagcaatg 4379
>emb|AL590611.7| Human DNA sequence from clone RP11-138K10 on chromosome 6 Contains part of a novel gene, complete sequence Length = 77888 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 tgatcttttattatttcttt 45 |||||||||||||||||||| Sbjct: 63531 tgatcttttattatttcttt 63512
>emb|AL445240.8| Human DNA sequence from clone RP11-242A15 on chromosome 10 Contains the 5' end of a novel gene, complete sequence Length = 152898 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 tattatttctttcagcaatg 53 |||||||||||||||||||| Sbjct: 151994 tattatttctttcagcaatg 152013
>emb|AL160255.14| Human DNA sequence from clone RP11-60N6 on chromosome 13 Contains the 5' end of a novel gene (KIAA0774), complete sequence Length = 172923 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 tattatttctttcagcaatg 53 |||||||||||||||||||| Sbjct: 70455 tattatttctttcagcaatg 70474
>gb|AC079061.8| Homo sapiens chromosome 8, clone RP11-422N16, complete sequence Length = 202392 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 ttcttcctatacaagaaaaa 203 |||||||||||||||||||| Sbjct: 90768 ttcttcctatacaagaaaaa 90749
>gb|AC104828.4| Homo sapiens BAC clone RP11-804N11 from 4, complete sequence Length = 181489 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 tattatttctttcagcaatg 53 |||||||||||||||||||| Sbjct: 146205 tattatttctttcagcaatg 146224
>gb|AC023926.6| Homo sapiens chromosome 8, clone RP11-9P20, complete sequence Length = 151353 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 ttatttctttcagcaatgat 55 |||||||||||||||||||| Sbjct: 84084 ttatttctttcagcaatgat 84103
>gb|AC073342.3| Homo sapiens BAC clone RP11-556I13 from 7, complete sequence Length = 167869 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 aagaattttacacattacaa 105 |||||||||||||||||||| Sbjct: 57355 aagaattttacacattacaa 57336
>gb|AC008782.6|AC008782 Homo sapiens chromosome 5 clone CTD-2026D23, complete sequence Length = 167275 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 tgatcttttattatttcttt 45 |||||||||||||||||||| Sbjct: 81892 tgatcttttattatttcttt 81911
>gb|AF041825.1|HSBPF2K03 Homo sapiens 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase (PF2K) gene, exons 3-6 Length = 3180 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 474 atcaaccttgccatcactgc 493 |||||||||||||||||||| Sbjct: 2235 atcaaccttgccatcactgc 2216
>gb|DQ079964.1| Eothinia elongata cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial Length = 660 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 29 tcttttattatttctttcagcaat 52 |||||||||| ||||||||||||| Sbjct: 279 tcttttattacttctttcagcaat 302
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 atcttttattatttctttca 47 |||||||||||||||||||| Sbjct: 4592489 atcttttattatttctttca 4592508
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 aagaattttacacattacaa 105 |||||||||||||||||||| Sbjct: 18278281 aagaattttacacattacaa 18278300
>gb|AC153909.5| Mus musculus 6 BAC RP23-190O15 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 226538 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 220 aagggccaagatgtcaccacggcaatgt 247 ||||||||||||||||||| || ||||| Sbjct: 72121 aagggccaagatgtcaccaagggaatgt 72094
>gb|AC002528.1|AC002528 Human BAC clone GS1-542D18 from 7q31-q32, complete sequence Length = 141120 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 tattatttctttcagcaatg 53 |||||||||||||||||||| Sbjct: 95333 tattatttctttcagcaatg 95314
>emb|CT737354.2| Human DNA sequence from clone XX-HCC1954_39C20, complete sequence Length = 148559 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 tgatcttttattatttcttt 45 |||||||||||||||||||| Sbjct: 122342 tgatcttttattatttcttt 122323
>gb|AC005562.1|AC005562 Homo sapiens chromosome 17, clone hRPK.271_K_11, complete sequence Length = 199182 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 tttaatgagctggttaatgg 298 |||||||||||||||||||| Sbjct: 115217 tttaatgagctggttaatgg 115198
>emb|BX629359.1|CNS09SBT Tetraodon nigroviridis BAC sequence Length = 139693 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 agcaaaacaaatttgtgtag 124 |||||||||||||||||||| Sbjct: 43421 agcaaaacaaatttgtgtag 43402
>dbj|AP001708.1| Homo sapiens genomic DNA, chromosome 21q, section 52/105 Length = 340000 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 ttattatttctttcagcaat 52 |||||||||||||||||||| Sbjct: 254838 ttattatttctttcagcaat 254857
>dbj|AP001681.1| Homo sapiens genomic DNA, chromosome 21q, section 25/105 Length = 340000 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 aagaattcctgaacttcttc 189 |||||||||||||||||||| Sbjct: 10837 aagaattcctgaacttcttc 10856
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 atcttttattatttctttca 47 |||||||||||||||||||| Sbjct: 4613740 atcttttattatttctttca 4613759
>emb|AL845539.12| Mouse DNA sequence from clone RP23-263O6 on chromosome 2, complete sequence Length = 177800 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 225 ccaagatgtcaccacggcaatgta 248 |||||||||||||| ||||||||| Sbjct: 11376 ccaagatgtcaccagggcaatgta 11399
>emb|AL731732.15| Mouse DNA sequence from clone RP23-100F3 on chromosome X, complete sequence Length = 230674 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 agaattcctgaacttcttcc 190 |||||||||||||||||||| Sbjct: 179897 agaattcctgaacttcttcc 179878
>dbj|AP004292.1| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1590E11 Length = 158466 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 ttcttcctatacaagaaaaa 203 |||||||||||||||||||| Sbjct: 94732 ttcttcctatacaagaaaaa 94751
>dbj|AP001136.1| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:B738P18, LL56-APP region, complete sequence Length = 88499 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 aagaattcctgaacttcttc 189 |||||||||||||||||||| Sbjct: 52220 aagaattcctgaacttcttc 52239
>dbj|AP001069.1| Homo sapiens genomic DNA, chromosome 21q22.1, clone:B382J1, SOD-AML region, complete sequence Length = 105567 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 ttattatttctttcagcaat 52 |||||||||||||||||||| Sbjct: 46783 ttattatttctttcagcaat 46802
>dbj|AB012229.1| Homo sapiens gene for fructose-6-phosphate,2-kinase/fructose-2, 6-bisphosphatase, partial cds Length = 9456 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 474 atcaaccttgccatcactgc 493 |||||||||||||||||||| Sbjct: 8507 atcaaccttgccatcactgc 8488 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,405,096 Number of Sequences: 3902068 Number of extensions: 5405096 Number of successful extensions: 115616 Number of sequences better than 10.0: 64 Number of HSP's better than 10.0 without gapping: 64 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 115252 Number of HSP's gapped (non-prelim): 364 length of query: 495 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 473 effective length of database: 17,147,199,772 effective search space: 8110625492156 effective search space used: 8110625492156 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
