ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags4e23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC079874.21| Oryza sativa chromosome 10 BAC OSJNBa0042H09 gen... 309 6e-81
2gb|AC079890.13| Oryza sativa chromosome 10 BAC OSJNBb0089A17 gen... 309 6e-81
3dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 309 6e-81
4dbj|AK066634.1| Oryza sativa (japonica cultivar-group) cDNA clon... 309 6e-81
5gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 309 6e-81
6ref|NM_197746.1| Oryza sativa (japonica cultivar-group) unknown ... 295 9e-77
7gb|AC151575.1| Mus musculus BAC clone RP24-126E1 from 19, comple... 44 0.53
8gb|AC132952.3| Mus musculus BAC clone RP24-175H8 from 19, comple... 44 0.53
9emb|Z47070.2|CET09B9 Caenorhabditis elegans Cosmid T09B9, comple... 42 2.1
10ref|NM_077239.2| Caenorhabditis elegans T09B9.4 (T09B9.4) mRNA, ... 42 2.1
11ref|NM_001007699.1| Rattus norvegicus choline/ethanolamine phosp... 40 8.3
12gb|AC113320.7| Mus musculus chromosome 6, clone RP23-445E16, com... 40 8.3
13gb|AC122012.3| Mus musculus BAC clone RP24-353N4 from 5, complet... 40 8.3
14emb|AL356414.11| Human DNA sequence from clone RP11-352D3 on chr... 40 8.3
15gb|AY289007.1|AY289003S5 Danio rerio signal transducer and activ... 40 8.3
16gb|AC158143.6| Mus musculus chromosome 5, clone RP23-409I5, comp... 40 8.3
17gb|AC126283.3| Homo sapiens BAC clone RP11-602N24 from 4, comple... 40 8.3
18gb|AC090241.9| Homo sapiens chromosome 18, clone RP11-687F6, com... 40 8.3
19gb|AC171386.3| Sorex araneus clone SA_Ba-429O4, complete sequence 40 8.3
20gb|AC007351.40|AC007351 Homo sapiens 12 BAC RP11-492N15 (Roswell... 40 8.3
21gb|AC100823.3| Homo sapiens chromosome 8, clone RP11-956J14, com... 40 8.3
22emb|BX569787.4| Zebrafish DNA sequence from clone CH211-208H1 in... 40 8.3
23gb|AC005509.1|AC005509 Homo sapiens chromosome 4 clone B200N5 ma... 40 8.3
24gb|AC129307.5| Mus musculus BAC clone RP24-200K10 from chromosom... 40 8.3
25gb|BC079471.1| Rattus norvegicus choline/ethanolamine phosphotra... 40 8.3
26gb|AC145211.3| Mus musculus BAC clone RP23-419G4 from 8, complet... 40 8.3
27emb|AL844585.11| Mouse DNA sequence from clone RP23-339I5 on chr... 40 8.3
28emb|AL672174.8| Mouse DNA sequence from clone RP23-408K4 on chro... 40 8.3

>gb|AC079874.21| Oryza sativa chromosome 10 BAC OSJNBa0042H09 genomic sequence,
            complete sequence
          Length = 144191

 Score =  309 bits (156), Expect = 6e-81
 Identities = 314/367 (85%), Gaps = 6/367 (1%)
 Strand = Plus / Minus

                                                                        
Query: 253  agttctcctacaatttgcagacattgttcttcctcattgtttctatgcttcctgctatgg 312
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7554 agttctcctacaattggcagacattgttcttcctcattgtttctatgcttcctgctatgg 7495

                                                                        
Query: 313  ttgatccaacagtccccacaaatccaagtgatgcacagctgcaaacagattcttcgatat 372
            |||||||| |||||||||||||||| |||||||||||||| || ||||||||||| | ||
Sbjct: 7494 ttgatccagcagtccccacaaatcctagtgatgcacagctacagacagattcttcaacat 7435

                                                                        
Query: 373  ataataaaatttccggcagttgaactgaatcacaatctttgttcgtgtttcctctgatct 432
            |||| |||||||| || |||||||||| ||||||||| ||  |||||||| || || | |
Sbjct: 7434 ataacaaaatttctggtagttgaactggatcacaatccttcctcgtgtttgctatgtttt 7375

                                                                        
Query: 433  ttggaaggaatccagaccttatgccatgttcagcagccataagcttctcggcagtctgt- 491
            | ||||  |||||||| || |  |||||||||||||||||||||  ||| || |||||| 
Sbjct: 7374 tgggaataaatccagatctcacaccatgttcagcagccataagccgctctgcggtctgtg 7315

                                                                        
Query: 492  -----agaacatcattttccttcagggtgtacagttgatatctcacatcttttgcaatat 546
                 ||  ||||| ||||||||||||||| || || ||||||| |||||||||||||||
Sbjct: 7314 ccaccagttcatcactttccttcagggtgtgcaatttatatctcccatcttttgcaatat 7255

                                                                        
Query: 547  ctgcgagataggttttcgtccagtttgctggggggagatcagtcatgaggaaaatttgaa 606
            |||| |||||||| || | |||||||||||| || ||||||||||| | ||| || ||||
Sbjct: 7254 ctgcaagataggtctttgaccagtttgctggtggaagatcagtcatcatgaacatgtgaa 7195

                   
Query: 607  caggacc 613
             ||||||
Sbjct: 7194 taggacc 7188



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>gb|AC079890.13| Oryza sativa chromosome 10 BAC OSJNBb0089A17 genomic sequence, complete
             sequence
          Length = 132927

 Score =  309 bits (156), Expect = 6e-81
 Identities = 314/367 (85%), Gaps = 6/367 (1%)
 Strand = Plus / Plus

                                                                         
Query: 253   agttctcctacaatttgcagacattgttcttcctcattgtttctatgcttcctgctatgg 312
             ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34407 agttctcctacaattggcagacattgttcttcctcattgtttctatgcttcctgctatgg 34466

                                                                         
Query: 313   ttgatccaacagtccccacaaatccaagtgatgcacagctgcaaacagattcttcgatat 372
             |||||||| |||||||||||||||| |||||||||||||| || ||||||||||| | ||
Sbjct: 34467 ttgatccagcagtccccacaaatcctagtgatgcacagctacagacagattcttcaacat 34526

                                                                         
Query: 373   ataataaaatttccggcagttgaactgaatcacaatctttgttcgtgtttcctctgatct 432
             |||| |||||||| || |||||||||| ||||||||| ||  |||||||| || || | |
Sbjct: 34527 ataacaaaatttctggtagttgaactggatcacaatccttcctcgtgtttgctatgtttt 34586

                                                                         
Query: 433   ttggaaggaatccagaccttatgccatgttcagcagccataagcttctcggcagtctgt- 491
             | ||||  |||||||| || |  |||||||||||||||||||||  ||| || |||||| 
Sbjct: 34587 tgggaataaatccagatctcacaccatgttcagcagccataagccgctctgcggtctgtg 34646

                                                                         
Query: 492   -----agaacatcattttccttcagggtgtacagttgatatctcacatcttttgcaatat 546
                  ||  ||||| ||||||||||||||| || || ||||||| |||||||||||||||
Sbjct: 34647 ccaccagttcatcactttccttcagggtgtgcaatttatatctcccatcttttgcaatat 34706

                                                                         
Query: 547   ctgcgagataggttttcgtccagtttgctggggggagatcagtcatgaggaaaatttgaa 606
             |||| |||||||| || | |||||||||||| || ||||||||||| | ||| || ||||
Sbjct: 34707 ctgcaagataggtctttgaccagtttgctggtggaagatcagtcatcatgaacatgtgaa 34766

                    
Query: 607   caggacc 613
              ||||||
Sbjct: 34767 taggacc 34773



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  309 bits (156), Expect = 6e-81
 Identities = 314/367 (85%), Gaps = 6/367 (1%)
 Strand = Plus / Plus

                                                                            
Query: 253      agttctcctacaatttgcagacattgttcttcctcattgtttctatgcttcctgctatgg 312
                ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21602503 agttctcctacaattggcagacattgttcttcctcattgtttctatgcttcctgctatgg 21602562

                                                                            
Query: 313      ttgatccaacagtccccacaaatccaagtgatgcacagctgcaaacagattcttcgatat 372
                |||||||| |||||||||||||||| |||||||||||||| || ||||||||||| | ||
Sbjct: 21602563 ttgatccagcagtccccacaaatcctagtgatgcacagctacagacagattcttcaacat 21602622

                                                                            
Query: 373      ataataaaatttccggcagttgaactgaatcacaatctttgttcgtgtttcctctgatct 432
                |||| |||||||| || |||||||||| ||||||||| ||  |||||||| || || | |
Sbjct: 21602623 ataacaaaatttctggtagttgaactggatcacaatccttcctcgtgtttgctatgtttt 21602682

                                                                            
Query: 433      ttggaaggaatccagaccttatgccatgttcagcagccataagcttctcggcagtctgt- 491
                | ||||  |||||||| || |  |||||||||||||||||||||  ||| || |||||| 
Sbjct: 21602683 tgggaataaatccagatctcacaccatgttcagcagccataagccgctctgcggtctgtg 21602742

                                                                            
Query: 492      -----agaacatcattttccttcagggtgtacagttgatatctcacatcttttgcaatat 546
                     ||  ||||| ||||||||||||||| || || ||||||| |||||||||||||||
Sbjct: 21602743 ccaccagttcatcactttccttcagggtgtgcaatttatatctcccatcttttgcaatat 21602802

                                                                            
Query: 547      ctgcgagataggttttcgtccagtttgctggggggagatcagtcatgaggaaaatttgaa 606
                |||| |||||||| || | |||||||||||| || ||||||||||| | ||| || ||||
Sbjct: 21602803 ctgcaagataggtctttgaccagtttgctggtggaagatcagtcatcatgaacatgtgaa 21602862

                       
Query: 607      caggacc 613
                 ||||||
Sbjct: 21602863 taggacc 21602869



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>dbj|AK066634.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013073E24, full
            insert sequence
          Length = 1858

 Score =  309 bits (156), Expect = 6e-81
 Identities = 314/367 (85%), Gaps = 6/367 (1%)
 Strand = Plus / Minus

                                                                        
Query: 253  agttctcctacaatttgcagacattgttcttcctcattgtttctatgcttcctgctatgg 312
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1575 agttctcctacaattggcagacattgttcttcctcattgtttctatgcttcctgctatgg 1516

                                                                        
Query: 313  ttgatccaacagtccccacaaatccaagtgatgcacagctgcaaacagattcttcgatat 372
            |||||||| |||||||||||||||| |||||||||||||| || ||||||||||| | ||
Sbjct: 1515 ttgatccagcagtccccacaaatcctagtgatgcacagctacagacagattcttcaacat 1456

                                                                        
Query: 373  ataataaaatttccggcagttgaactgaatcacaatctttgttcgtgtttcctctgatct 432
            |||| |||||||| || |||||||||| ||||||||| ||  |||||||| || || | |
Sbjct: 1455 ataacaaaatttctggtagttgaactggatcacaatccttcctcgtgtttgctatgtttt 1396

                                                                        
Query: 433  ttggaaggaatccagaccttatgccatgttcagcagccataagcttctcggcagtctgt- 491
            | ||||  |||||||| || |  |||||||||||||||||||||  ||| || |||||| 
Sbjct: 1395 tgggaataaatccagatctcacaccatgttcagcagccataagccgctctgcggtctgtg 1336

                                                                        
Query: 492  -----agaacatcattttccttcagggtgtacagttgatatctcacatcttttgcaatat 546
                 ||  ||||| ||||||||||||||| || || ||||||| |||||||||||||||
Sbjct: 1335 ccaccagttcatcactttccttcagggtgtgcaatttatatctcccatcttttgcaatat 1276

                                                                        
Query: 547  ctgcgagataggttttcgtccagtttgctggggggagatcagtcatgaggaaaatttgaa 606
            |||| |||||||| || | |||||||||||| || ||||||||||| | ||| || ||||
Sbjct: 1275 ctgcaagataggtctttgaccagtttgctggtggaagatcagtcatcatgaacatgtgaa 1216

                   
Query: 607  caggacc 613
             ||||||
Sbjct: 1215 taggacc 1209



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  309 bits (156), Expect = 6e-81
 Identities = 314/367 (85%), Gaps = 6/367 (1%)
 Strand = Plus / Plus

                                                                            
Query: 253      agttctcctacaatttgcagacattgttcttcctcattgtttctatgcttcctgctatgg 312
                ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21614166 agttctcctacaattggcagacattgttcttcctcattgtttctatgcttcctgctatgg 21614225

                                                                            
Query: 313      ttgatccaacagtccccacaaatccaagtgatgcacagctgcaaacagattcttcgatat 372
                |||||||| |||||||||||||||| |||||||||||||| || ||||||||||| | ||
Sbjct: 21614226 ttgatccagcagtccccacaaatcctagtgatgcacagctacagacagattcttcaacat 21614285

                                                                            
Query: 373      ataataaaatttccggcagttgaactgaatcacaatctttgttcgtgtttcctctgatct 432
                |||| |||||||| || |||||||||| ||||||||| ||  |||||||| || || | |
Sbjct: 21614286 ataacaaaatttctggtagttgaactggatcacaatccttcctcgtgtttgctatgtttt 21614345

                                                                            
Query: 433      ttggaaggaatccagaccttatgccatgttcagcagccataagcttctcggcagtctgt- 491
                | ||||  |||||||| || |  |||||||||||||||||||||  ||| || |||||| 
Sbjct: 21614346 tgggaataaatccagatctcacaccatgttcagcagccataagccgctctgcggtctgtg 21614405

                                                                            
Query: 492      -----agaacatcattttccttcagggtgtacagttgatatctcacatcttttgcaatat 546
                     ||  ||||| ||||||||||||||| || || ||||||| |||||||||||||||
Sbjct: 21614406 ccaccagttcatcactttccttcagggtgtgcaatttatatctcccatcttttgcaatat 21614465

                                                                            
Query: 547      ctgcgagataggttttcgtccagtttgctggggggagatcagtcatgaggaaaatttgaa 606
                |||| |||||||| || | |||||||||||| || ||||||||||| | ||| || ||||
Sbjct: 21614466 ctgcaagataggtctttgaccagtttgctggtggaagatcagtcatcatgaacatgtgaa 21614525

                       
Query: 607      caggacc 613
                 ||||||
Sbjct: 21614526 taggacc 21614532



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>ref|NM_197746.1| Oryza sativa (japonica cultivar-group) unknown protein
            (OSJNBa0042H09.2), mRNA
          Length = 1617

 Score =  295 bits (149), Expect = 9e-77
 Identities = 307/360 (85%), Gaps = 6/360 (1%)
 Strand = Plus / Minus

                                                                        
Query: 260  ctacaatttgcagacattgttcttcctcattgtttctatgcttcctgctatggttgatcc 319
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1617 ctacaattggcagacattgttcttcctcattgtttctatgcttcctgctatggttgatcc 1558

                                                                        
Query: 320  aacagtccccacaaatccaagtgatgcacagctgcaaacagattcttcgatatataataa 379
            | |||||||||||||||| |||||||||||||| || ||||||||||| | |||||| ||
Sbjct: 1557 agcagtccccacaaatcctagtgatgcacagctacagacagattcttcaacatataacaa 1498

                                                                        
Query: 380  aatttccggcagttgaactgaatcacaatctttgttcgtgtttcctctgatctttggaag 439
            |||||| || |||||||||| ||||||||| ||  |||||||| || || | || |||| 
Sbjct: 1497 aatttctggtagttgaactggatcacaatccttcctcgtgtttgctatgtttttgggaat 1438

                                                                        
Query: 440  gaatccagaccttatgccatgttcagcagccataagcttctcggcagtctgt------ag 493
             |||||||| || |  |||||||||||||||||||||  ||| || ||||||      ||
Sbjct: 1437 aaatccagatctcacaccatgttcagcagccataagccgctctgcggtctgtgccaccag 1378

                                                                        
Query: 494  aacatcattttccttcagggtgtacagttgatatctcacatcttttgcaatatctgcgag 553
              ||||| ||||||||||||||| || || ||||||| ||||||||||||||||||| ||
Sbjct: 1377 ttcatcactttccttcagggtgtgcaatttatatctcccatcttttgcaatatctgcaag 1318

                                                                        
Query: 554  ataggttttcgtccagtttgctggggggagatcagtcatgaggaaaatttgaacaggacc 613
            |||||| || | |||||||||||| || ||||||||||| | ||| || |||| ||||||
Sbjct: 1317 ataggtctttgaccagtttgctggtggaagatcagtcatcatgaacatgtgaataggacc 1258



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>gb|AC151575.1| Mus musculus BAC clone RP24-126E1 from 19, complete sequence
          Length = 200563

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 491    tagaacatcattttccttcagg 512
              ||||||||||||||||||||||
Sbjct: 124044 tagaacatcattttccttcagg 124023



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>gb|AC132952.3| Mus musculus BAC clone RP24-175H8 from 19, complete sequence
          Length = 177345

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 491    tagaacatcattttccttcagg 512
              ||||||||||||||||||||||
Sbjct: 150610 tagaacatcattttccttcagg 150631



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>emb|Z47070.2|CET09B9 Caenorhabditis elegans Cosmid T09B9, complete sequence
          Length = 35347

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 466   cagccataagcttctcggcag 486
             |||||||||||||||||||||
Sbjct: 27956 cagccataagcttctcggcag 27976



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>ref|NM_077239.2| Caenorhabditis elegans T09B9.4 (T09B9.4) mRNA, complete cds
          Length = 2048

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 466 cagccataagcttctcggcag 486
           |||||||||||||||||||||
Sbjct: 756 cagccataagcttctcggcag 736



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>ref|NM_001007699.1| Rattus norvegicus choline/ethanolamine phosphotransferase 1 (Cept1),
            mRNA
          Length = 2186

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 301  ttcctgctatggttgatcca 320
            ||||||||||||||||||||
Sbjct: 1080 ttcctgctatggttgatcca 1061



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>gb|AC113320.7| Mus musculus chromosome 6, clone RP23-445E16, complete sequence
          Length = 267708

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 85     aaatagttagaatttttcattcat 108
              |||||||||||||||||| |||||
Sbjct: 167500 aaatagttagaatttttctttcat 167523



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>gb|AC122012.3| Mus musculus BAC clone RP24-353N4 from 5, complete sequence
          Length = 188867

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 279   ttcttcctcattgtttctat 298
             ||||||||||||||||||||
Sbjct: 40064 ttcttcctcattgtttctat 40045



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>emb|AL356414.11| Human DNA sequence from clone RP11-352D3 on chromosome 20 Contains the
             RPL21P2 gene for ribosomal protein L21 pseudogene 2 and a
             novel gene, complete sequence
          Length = 72540

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 571   ttgctggggggagatcagtc 590
             ||||||||||||||||||||
Sbjct: 22393 ttgctggggggagatcagtc 22412



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>gb|AY289007.1|AY289003S5 Danio rerio signal transducer and activator of transcription 5 (stat5)
             gene, exons 17 through 20 and complete cds
          Length = 32855

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 361   attcttcgatatataataaaattt 384
             |||||||||||| |||||||||||
Sbjct: 12020 attcttcgatatgtaataaaattt 11997



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>gb|AC158143.6| Mus musculus chromosome 5, clone RP23-409I5, complete sequence
          Length = 191873

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 265    atttgcagacattgttcttc 284
              ||||||||||||||||||||
Sbjct: 117086 atttgcagacattgttcttc 117067



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>gb|AC126283.3| Homo sapiens BAC clone RP11-602N24 from 4, complete sequence
          Length = 118642

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 86     aatagttagaatttttcatt 105
              ||||||||||||||||||||
Sbjct: 116991 aatagttagaatttttcatt 117010



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>gb|AC090241.9| Homo sapiens chromosome 18, clone RP11-687F6, complete sequence
          Length = 166194

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 270    cagacattgttcttcctcattgtt 293
              ||||||||||||||| ||||||||
Sbjct: 106792 cagacattgttcttcttcattgtt 106815



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>gb|AC171386.3| Sorex araneus clone SA_Ba-429O4, complete sequence
          Length = 144034

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 324    gtccccacaaatccaagtga 343
              ||||||||||||||||||||
Sbjct: 111054 gtccccacaaatccaagtga 111035



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>gb|AC007351.40|AC007351 Homo sapiens 12 BAC RP11-492N15 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 195501

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 571    ttgctggggggagatcagtc 590
              ||||||||||||||||||||
Sbjct: 142692 ttgctggggggagatcagtc 142673



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>gb|AC100823.3| Homo sapiens chromosome 8, clone RP11-956J14, complete sequence
          Length = 191937

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 362   ttcttcgatatataataaaatttc 385
             ||||| ||||||||||||||||||
Sbjct: 78144 ttcttagatatataataaaatttc 78167



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>emb|BX569787.4| Zebrafish DNA sequence from clone CH211-208H1 in linkage group 6,
              complete sequence
          Length = 214158

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 40     atttatcactgtaagttgtg 59
              ||||||||||||||||||||
Sbjct: 121167 atttatcactgtaagttgtg 121148



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>gb|AC005509.1|AC005509 Homo sapiens chromosome 4 clone B200N5 map 4q25, complete sequence
          Length = 143391

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 86  aatagttagaatttttcatt 105
           ||||||||||||||||||||
Sbjct: 349 aatagttagaatttttcatt 368



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>gb|AC129307.5| Mus musculus BAC clone RP24-200K10 from chromosome 8, complete sequence
          Length = 200660

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 139    gtttctcagtctaaagtctg 158
              ||||||||||||||||||||
Sbjct: 188412 gtttctcagtctaaagtctg 188393



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>gb|BC079471.1| Rattus norvegicus choline/ethanolamine phosphotransferase 1, mRNA
            (cDNA clone MGC:95031 IMAGE:7122765), complete cds
          Length = 2186

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 301  ttcctgctatggttgatcca 320
            ||||||||||||||||||||
Sbjct: 1080 ttcctgctatggttgatcca 1061



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>gb|AC145211.3| Mus musculus BAC clone RP23-419G4 from 8, complete sequence
          Length = 191166

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 139   gtttctcagtctaaagtctg 158
             ||||||||||||||||||||
Sbjct: 55371 gtttctcagtctaaagtctg 55352



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>emb|AL844585.11| Mouse DNA sequence from clone RP23-339I5 on chromosome 4, complete
              sequence
          Length = 141401

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 89     agttagaatttttcattcatctcc 112
              ||||||||||||||||||| ||||
Sbjct: 138373 agttagaatttttcattcacctcc 138396



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>emb|AL672174.8| Mouse DNA sequence from clone RP23-408K4 on chromosome X, complete
             sequence
          Length = 201642

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 396   actgaatcacaatctttgtt 415
             ||||||||||||||||||||
Sbjct: 86746 actgaatcacaatctttgtt 86727


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,181,633
Number of Sequences: 3902068
Number of extensions: 6181633
Number of successful extensions: 118579
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 118486
Number of HSP's gapped (non-prelim): 93
length of query: 613
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 590
effective length of database: 17,143,297,704
effective search space: 10114545645360
effective search space used: 10114545645360
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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