| Clone Name | rbags4e23 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC079874.21| Oryza sativa chromosome 10 BAC OSJNBa0042H09 genomic sequence, complete sequence Length = 144191 Score = 309 bits (156), Expect = 6e-81 Identities = 314/367 (85%), Gaps = 6/367 (1%) Strand = Plus / Minus Query: 253 agttctcctacaatttgcagacattgttcttcctcattgtttctatgcttcctgctatgg 312 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7554 agttctcctacaattggcagacattgttcttcctcattgtttctatgcttcctgctatgg 7495 Query: 313 ttgatccaacagtccccacaaatccaagtgatgcacagctgcaaacagattcttcgatat 372 |||||||| |||||||||||||||| |||||||||||||| || ||||||||||| | || Sbjct: 7494 ttgatccagcagtccccacaaatcctagtgatgcacagctacagacagattcttcaacat 7435 Query: 373 ataataaaatttccggcagttgaactgaatcacaatctttgttcgtgtttcctctgatct 432 |||| |||||||| || |||||||||| ||||||||| || |||||||| || || | | Sbjct: 7434 ataacaaaatttctggtagttgaactggatcacaatccttcctcgtgtttgctatgtttt 7375 Query: 433 ttggaaggaatccagaccttatgccatgttcagcagccataagcttctcggcagtctgt- 491 | |||| |||||||| || | ||||||||||||||||||||| ||| || |||||| Sbjct: 7374 tgggaataaatccagatctcacaccatgttcagcagccataagccgctctgcggtctgtg 7315 Query: 492 -----agaacatcattttccttcagggtgtacagttgatatctcacatcttttgcaatat 546 || ||||| ||||||||||||||| || || ||||||| ||||||||||||||| Sbjct: 7314 ccaccagttcatcactttccttcagggtgtgcaatttatatctcccatcttttgcaatat 7255 Query: 547 ctgcgagataggttttcgtccagtttgctggggggagatcagtcatgaggaaaatttgaa 606 |||| |||||||| || | |||||||||||| || ||||||||||| | ||| || |||| Sbjct: 7254 ctgcaagataggtctttgaccagtttgctggtggaagatcagtcatcatgaacatgtgaa 7195 Query: 607 caggacc 613 |||||| Sbjct: 7194 taggacc 7188
>gb|AC079890.13| Oryza sativa chromosome 10 BAC OSJNBb0089A17 genomic sequence, complete sequence Length = 132927 Score = 309 bits (156), Expect = 6e-81 Identities = 314/367 (85%), Gaps = 6/367 (1%) Strand = Plus / Plus Query: 253 agttctcctacaatttgcagacattgttcttcctcattgtttctatgcttcctgctatgg 312 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 34407 agttctcctacaattggcagacattgttcttcctcattgtttctatgcttcctgctatgg 34466 Query: 313 ttgatccaacagtccccacaaatccaagtgatgcacagctgcaaacagattcttcgatat 372 |||||||| |||||||||||||||| |||||||||||||| || ||||||||||| | || Sbjct: 34467 ttgatccagcagtccccacaaatcctagtgatgcacagctacagacagattcttcaacat 34526 Query: 373 ataataaaatttccggcagttgaactgaatcacaatctttgttcgtgtttcctctgatct 432 |||| |||||||| || |||||||||| ||||||||| || |||||||| || || | | Sbjct: 34527 ataacaaaatttctggtagttgaactggatcacaatccttcctcgtgtttgctatgtttt 34586 Query: 433 ttggaaggaatccagaccttatgccatgttcagcagccataagcttctcggcagtctgt- 491 | |||| |||||||| || | ||||||||||||||||||||| ||| || |||||| Sbjct: 34587 tgggaataaatccagatctcacaccatgttcagcagccataagccgctctgcggtctgtg 34646 Query: 492 -----agaacatcattttccttcagggtgtacagttgatatctcacatcttttgcaatat 546 || ||||| ||||||||||||||| || || ||||||| ||||||||||||||| Sbjct: 34647 ccaccagttcatcactttccttcagggtgtgcaatttatatctcccatcttttgcaatat 34706 Query: 547 ctgcgagataggttttcgtccagtttgctggggggagatcagtcatgaggaaaatttgaa 606 |||| |||||||| || | |||||||||||| || ||||||||||| | ||| || |||| Sbjct: 34707 ctgcaagataggtctttgaccagtttgctggtggaagatcagtcatcatgaacatgtgaa 34766 Query: 607 caggacc 613 |||||| Sbjct: 34767 taggacc 34773
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 309 bits (156), Expect = 6e-81 Identities = 314/367 (85%), Gaps = 6/367 (1%) Strand = Plus / Plus Query: 253 agttctcctacaatttgcagacattgttcttcctcattgtttctatgcttcctgctatgg 312 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 21602503 agttctcctacaattggcagacattgttcttcctcattgtttctatgcttcctgctatgg 21602562 Query: 313 ttgatccaacagtccccacaaatccaagtgatgcacagctgcaaacagattcttcgatat 372 |||||||| |||||||||||||||| |||||||||||||| || ||||||||||| | || Sbjct: 21602563 ttgatccagcagtccccacaaatcctagtgatgcacagctacagacagattcttcaacat 21602622 Query: 373 ataataaaatttccggcagttgaactgaatcacaatctttgttcgtgtttcctctgatct 432 |||| |||||||| || |||||||||| ||||||||| || |||||||| || || | | Sbjct: 21602623 ataacaaaatttctggtagttgaactggatcacaatccttcctcgtgtttgctatgtttt 21602682 Query: 433 ttggaaggaatccagaccttatgccatgttcagcagccataagcttctcggcagtctgt- 491 | |||| |||||||| || | ||||||||||||||||||||| ||| || |||||| Sbjct: 21602683 tgggaataaatccagatctcacaccatgttcagcagccataagccgctctgcggtctgtg 21602742 Query: 492 -----agaacatcattttccttcagggtgtacagttgatatctcacatcttttgcaatat 546 || ||||| ||||||||||||||| || || ||||||| ||||||||||||||| Sbjct: 21602743 ccaccagttcatcactttccttcagggtgtgcaatttatatctcccatcttttgcaatat 21602802 Query: 547 ctgcgagataggttttcgtccagtttgctggggggagatcagtcatgaggaaaatttgaa 606 |||| |||||||| || | |||||||||||| || ||||||||||| | ||| || |||| Sbjct: 21602803 ctgcaagataggtctttgaccagtttgctggtggaagatcagtcatcatgaacatgtgaa 21602862 Query: 607 caggacc 613 |||||| Sbjct: 21602863 taggacc 21602869
>dbj|AK066634.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013073E24, full insert sequence Length = 1858 Score = 309 bits (156), Expect = 6e-81 Identities = 314/367 (85%), Gaps = 6/367 (1%) Strand = Plus / Minus Query: 253 agttctcctacaatttgcagacattgttcttcctcattgtttctatgcttcctgctatgg 312 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1575 agttctcctacaattggcagacattgttcttcctcattgtttctatgcttcctgctatgg 1516 Query: 313 ttgatccaacagtccccacaaatccaagtgatgcacagctgcaaacagattcttcgatat 372 |||||||| |||||||||||||||| |||||||||||||| || ||||||||||| | || Sbjct: 1515 ttgatccagcagtccccacaaatcctagtgatgcacagctacagacagattcttcaacat 1456 Query: 373 ataataaaatttccggcagttgaactgaatcacaatctttgttcgtgtttcctctgatct 432 |||| |||||||| || |||||||||| ||||||||| || |||||||| || || | | Sbjct: 1455 ataacaaaatttctggtagttgaactggatcacaatccttcctcgtgtttgctatgtttt 1396 Query: 433 ttggaaggaatccagaccttatgccatgttcagcagccataagcttctcggcagtctgt- 491 | |||| |||||||| || | ||||||||||||||||||||| ||| || |||||| Sbjct: 1395 tgggaataaatccagatctcacaccatgttcagcagccataagccgctctgcggtctgtg 1336 Query: 492 -----agaacatcattttccttcagggtgtacagttgatatctcacatcttttgcaatat 546 || ||||| ||||||||||||||| || || ||||||| ||||||||||||||| Sbjct: 1335 ccaccagttcatcactttccttcagggtgtgcaatttatatctcccatcttttgcaatat 1276 Query: 547 ctgcgagataggttttcgtccagtttgctggggggagatcagtcatgaggaaaatttgaa 606 |||| |||||||| || | |||||||||||| || ||||||||||| | ||| || |||| Sbjct: 1275 ctgcaagataggtctttgaccagtttgctggtggaagatcagtcatcatgaacatgtgaa 1216 Query: 607 caggacc 613 |||||| Sbjct: 1215 taggacc 1209
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 309 bits (156), Expect = 6e-81 Identities = 314/367 (85%), Gaps = 6/367 (1%) Strand = Plus / Plus Query: 253 agttctcctacaatttgcagacattgttcttcctcattgtttctatgcttcctgctatgg 312 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 21614166 agttctcctacaattggcagacattgttcttcctcattgtttctatgcttcctgctatgg 21614225 Query: 313 ttgatccaacagtccccacaaatccaagtgatgcacagctgcaaacagattcttcgatat 372 |||||||| |||||||||||||||| |||||||||||||| || ||||||||||| | || Sbjct: 21614226 ttgatccagcagtccccacaaatcctagtgatgcacagctacagacagattcttcaacat 21614285 Query: 373 ataataaaatttccggcagttgaactgaatcacaatctttgttcgtgtttcctctgatct 432 |||| |||||||| || |||||||||| ||||||||| || |||||||| || || | | Sbjct: 21614286 ataacaaaatttctggtagttgaactggatcacaatccttcctcgtgtttgctatgtttt 21614345 Query: 433 ttggaaggaatccagaccttatgccatgttcagcagccataagcttctcggcagtctgt- 491 | |||| |||||||| || | ||||||||||||||||||||| ||| || |||||| Sbjct: 21614346 tgggaataaatccagatctcacaccatgttcagcagccataagccgctctgcggtctgtg 21614405 Query: 492 -----agaacatcattttccttcagggtgtacagttgatatctcacatcttttgcaatat 546 || ||||| ||||||||||||||| || || ||||||| ||||||||||||||| Sbjct: 21614406 ccaccagttcatcactttccttcagggtgtgcaatttatatctcccatcttttgcaatat 21614465 Query: 547 ctgcgagataggttttcgtccagtttgctggggggagatcagtcatgaggaaaatttgaa 606 |||| |||||||| || | |||||||||||| || ||||||||||| | ||| || |||| Sbjct: 21614466 ctgcaagataggtctttgaccagtttgctggtggaagatcagtcatcatgaacatgtgaa 21614525 Query: 607 caggacc 613 |||||| Sbjct: 21614526 taggacc 21614532
>ref|NM_197746.1| Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0042H09.2), mRNA Length = 1617 Score = 295 bits (149), Expect = 9e-77 Identities = 307/360 (85%), Gaps = 6/360 (1%) Strand = Plus / Minus Query: 260 ctacaatttgcagacattgttcttcctcattgtttctatgcttcctgctatggttgatcc 319 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1617 ctacaattggcagacattgttcttcctcattgtttctatgcttcctgctatggttgatcc 1558 Query: 320 aacagtccccacaaatccaagtgatgcacagctgcaaacagattcttcgatatataataa 379 | |||||||||||||||| |||||||||||||| || ||||||||||| | |||||| || Sbjct: 1557 agcagtccccacaaatcctagtgatgcacagctacagacagattcttcaacatataacaa 1498 Query: 380 aatttccggcagttgaactgaatcacaatctttgttcgtgtttcctctgatctttggaag 439 |||||| || |||||||||| ||||||||| || |||||||| || || | || |||| Sbjct: 1497 aatttctggtagttgaactggatcacaatccttcctcgtgtttgctatgtttttgggaat 1438 Query: 440 gaatccagaccttatgccatgttcagcagccataagcttctcggcagtctgt------ag 493 |||||||| || | ||||||||||||||||||||| ||| || |||||| || Sbjct: 1437 aaatccagatctcacaccatgttcagcagccataagccgctctgcggtctgtgccaccag 1378 Query: 494 aacatcattttccttcagggtgtacagttgatatctcacatcttttgcaatatctgcgag 553 ||||| ||||||||||||||| || || ||||||| ||||||||||||||||||| || Sbjct: 1377 ttcatcactttccttcagggtgtgcaatttatatctcccatcttttgcaatatctgcaag 1318 Query: 554 ataggttttcgtccagtttgctggggggagatcagtcatgaggaaaatttgaacaggacc 613 |||||| || | |||||||||||| || ||||||||||| | ||| || |||| |||||| Sbjct: 1317 ataggtctttgaccagtttgctggtggaagatcagtcatcatgaacatgtgaataggacc 1258
>gb|AC151575.1| Mus musculus BAC clone RP24-126E1 from 19, complete sequence Length = 200563 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 491 tagaacatcattttccttcagg 512 |||||||||||||||||||||| Sbjct: 124044 tagaacatcattttccttcagg 124023
>gb|AC132952.3| Mus musculus BAC clone RP24-175H8 from 19, complete sequence Length = 177345 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 491 tagaacatcattttccttcagg 512 |||||||||||||||||||||| Sbjct: 150610 tagaacatcattttccttcagg 150631
>emb|Z47070.2|CET09B9 Caenorhabditis elegans Cosmid T09B9, complete sequence Length = 35347 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 466 cagccataagcttctcggcag 486 ||||||||||||||||||||| Sbjct: 27956 cagccataagcttctcggcag 27976
>ref|NM_077239.2| Caenorhabditis elegans T09B9.4 (T09B9.4) mRNA, complete cds Length = 2048 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 466 cagccataagcttctcggcag 486 ||||||||||||||||||||| Sbjct: 756 cagccataagcttctcggcag 736
>ref|NM_001007699.1| Rattus norvegicus choline/ethanolamine phosphotransferase 1 (Cept1), mRNA Length = 2186 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 301 ttcctgctatggttgatcca 320 |||||||||||||||||||| Sbjct: 1080 ttcctgctatggttgatcca 1061
>gb|AC113320.7| Mus musculus chromosome 6, clone RP23-445E16, complete sequence Length = 267708 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 85 aaatagttagaatttttcattcat 108 |||||||||||||||||| ||||| Sbjct: 167500 aaatagttagaatttttctttcat 167523
>gb|AC122012.3| Mus musculus BAC clone RP24-353N4 from 5, complete sequence Length = 188867 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 ttcttcctcattgtttctat 298 |||||||||||||||||||| Sbjct: 40064 ttcttcctcattgtttctat 40045
>emb|AL356414.11| Human DNA sequence from clone RP11-352D3 on chromosome 20 Contains the RPL21P2 gene for ribosomal protein L21 pseudogene 2 and a novel gene, complete sequence Length = 72540 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 571 ttgctggggggagatcagtc 590 |||||||||||||||||||| Sbjct: 22393 ttgctggggggagatcagtc 22412
>gb|AY289007.1|AY289003S5 Danio rerio signal transducer and activator of transcription 5 (stat5) gene, exons 17 through 20 and complete cds Length = 32855 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 361 attcttcgatatataataaaattt 384 |||||||||||| ||||||||||| Sbjct: 12020 attcttcgatatgtaataaaattt 11997
>gb|AC158143.6| Mus musculus chromosome 5, clone RP23-409I5, complete sequence Length = 191873 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 265 atttgcagacattgttcttc 284 |||||||||||||||||||| Sbjct: 117086 atttgcagacattgttcttc 117067
>gb|AC126283.3| Homo sapiens BAC clone RP11-602N24 from 4, complete sequence Length = 118642 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 aatagttagaatttttcatt 105 |||||||||||||||||||| Sbjct: 116991 aatagttagaatttttcatt 117010
>gb|AC090241.9| Homo sapiens chromosome 18, clone RP11-687F6, complete sequence Length = 166194 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 270 cagacattgttcttcctcattgtt 293 ||||||||||||||| |||||||| Sbjct: 106792 cagacattgttcttcttcattgtt 106815
>gb|AC171386.3| Sorex araneus clone SA_Ba-429O4, complete sequence Length = 144034 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 gtccccacaaatccaagtga 343 |||||||||||||||||||| Sbjct: 111054 gtccccacaaatccaagtga 111035
>gb|AC007351.40|AC007351 Homo sapiens 12 BAC RP11-492N15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 195501 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 571 ttgctggggggagatcagtc 590 |||||||||||||||||||| Sbjct: 142692 ttgctggggggagatcagtc 142673
>gb|AC100823.3| Homo sapiens chromosome 8, clone RP11-956J14, complete sequence Length = 191937 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 362 ttcttcgatatataataaaatttc 385 ||||| |||||||||||||||||| Sbjct: 78144 ttcttagatatataataaaatttc 78167
>emb|BX569787.4| Zebrafish DNA sequence from clone CH211-208H1 in linkage group 6, complete sequence Length = 214158 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 atttatcactgtaagttgtg 59 |||||||||||||||||||| Sbjct: 121167 atttatcactgtaagttgtg 121148
>gb|AC005509.1|AC005509 Homo sapiens chromosome 4 clone B200N5 map 4q25, complete sequence Length = 143391 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 aatagttagaatttttcatt 105 |||||||||||||||||||| Sbjct: 349 aatagttagaatttttcatt 368
>gb|AC129307.5| Mus musculus BAC clone RP24-200K10 from chromosome 8, complete sequence Length = 200660 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 gtttctcagtctaaagtctg 158 |||||||||||||||||||| Sbjct: 188412 gtttctcagtctaaagtctg 188393
>gb|BC079471.1| Rattus norvegicus choline/ethanolamine phosphotransferase 1, mRNA (cDNA clone MGC:95031 IMAGE:7122765), complete cds Length = 2186 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 301 ttcctgctatggttgatcca 320 |||||||||||||||||||| Sbjct: 1080 ttcctgctatggttgatcca 1061
>gb|AC145211.3| Mus musculus BAC clone RP23-419G4 from 8, complete sequence Length = 191166 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 gtttctcagtctaaagtctg 158 |||||||||||||||||||| Sbjct: 55371 gtttctcagtctaaagtctg 55352
>emb|AL844585.11| Mouse DNA sequence from clone RP23-339I5 on chromosome 4, complete sequence Length = 141401 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 89 agttagaatttttcattcatctcc 112 ||||||||||||||||||| |||| Sbjct: 138373 agttagaatttttcattcacctcc 138396
>emb|AL672174.8| Mouse DNA sequence from clone RP23-408K4 on chromosome X, complete sequence Length = 201642 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 actgaatcacaatctttgtt 415 |||||||||||||||||||| Sbjct: 86746 actgaatcacaatctttgtt 86727 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,181,633 Number of Sequences: 3902068 Number of extensions: 6181633 Number of successful extensions: 118579 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 118486 Number of HSP's gapped (non-prelim): 93 length of query: 613 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 590 effective length of database: 17,143,297,704 effective search space: 10114545645360 effective search space used: 10114545645360 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)