ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags3p16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1JAK3_MOUSE (Q62137) Tyrosine-protein kinase JAK3 (EC 2.7.10.2) (... 31 2.4
2MRP3_HUMAN (O15438) Canalicular multispecific organic anion tran... 30 4.1
3ECM30_YEAST (Q06673) Extracellular matrix protein 30 29 7.1
4LARGE_BRARE (Q66PG2) Glycosyltransferase-like protein LARGE1 (EC... 29 9.2

>JAK3_MOUSE (Q62137) Tyrosine-protein kinase JAK3 (EC 2.7.10.2) (Janus kinase|
           3) (JAK-3)
          Length = 1299

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -2

Query: 432 TMYRLELSSMKVPWIVGECLR*RKTMYA*CTLVCISAGLWG 310
           T+  LE+ + ++PW+  ECL+  +T+       C+ A  WG
Sbjct: 888 TVLSLEMLTDRIPWVAPECLQEAQTL-------CLEADKWG 921



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>MRP3_HUMAN (O15438) Canalicular multispecific organic anion transporter 2|
           (Multidrug resistance-associated protein 3)
           (Multi-specific organic anion transporter-D) (MOAT-D)
          Length = 1527

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
 Frame = -2

Query: 177 IYFVLPLTRNIRAIPSLIFLY----QGSTMDSLACLFWFLCVAGCYIYVLLPFQNSCL 16
           ++FV PL   +  + + + +     QG     +  +FWFLCV    +  ++PF++  L
Sbjct: 104 VFFVTPLVVGVTMLLATLLIQYERLQGVQSSGVLIIFWFLCV----VCAIVPFRSKIL 157



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>ECM30_YEAST (Q06673) Extracellular matrix protein 30|
          Length = 1274

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 1   YIDKSKTRILEWKEYINITSSHAKKPEKACKTVHSTPLVK 120
           +ID S+ R +    + N +SSHA  P  +    H+ P  K
Sbjct: 399 HIDASRRRAVSTSSHDNSSSSHASLPSSSSAAYHTKPQTK 438



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>LARGE_BRARE (Q66PG2) Glycosyltransferase-like protein LARGE1 (EC 2.4.-.-)|
           (Acetylglucosaminyltransferase-like 1A)
          Length = 757

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +2

Query: 248 TLHKLENVRRILSGRQDKSAHPHSPAEIQTKVHHAYIVFLHLKHSPTIQGT 400
           T H  EN+++ LS   D+    +     +  VH  ++ FLH ++ PT+  T
Sbjct: 424 TDHNSENLQKTLS-ELDEDDPCYEFRRERFTVHRTHVYFLHYEYEPTVDNT 473


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,570,498
Number of Sequences: 219361
Number of extensions: 1607870
Number of successful extensions: 3849
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3849
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4085413911
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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