| Clone Name | rbags3p11 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_197878.1| Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0027L23.4), mRNA Length = 653 Score = 482 bits (243), Expect = e-133 Identities = 285/299 (95%) Strand = Plus / Minus Query: 346 agctactcctcgacctcgaccaccttcttgggctcgtggaggtccgccgggcggtggtcc 405 |||||||| ||| |||| |||||||||||||| ||||| || |||| ||||||| |||| Sbjct: 384 agctactcgtcggcctcaaccaccttcttgggatcgtgcagctccggcgggcgggcgtcc 325 Query: 406 ttgccccatccgacgccgcgggtggactcgaggtactggtcgacgaggtggcggcacttc 465 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 324 ttgccccatccgacgccgcgggtggcctcgaggtactggtcgacgaggtggcggcacttc 265 Query: 466 tggtggtggttgacgccctcgatccggtagcaccagcggaggcggtcacggatgatcttg 525 ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| Sbjct: 264 tggtggtggttgacgccctcgatgcggtagcaccagcggaggcggtcgcggatgatcttg 205 Query: 526 gcggtctcgatctggatccacttctcccgcaccaggtgctccctgtactccagcatcgcc 585 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 204 gcggtctcgatctggatccacttctccctcaccaggtgctccctgtactccagcatcgcc 145 Query: 586 accgggtccccgtacgggttcttcgggtcgaagtcatccggcggcctctcgtcgaactc 644 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 144 accgggtccccgtacgggttcttcgggtcgaagtcatccggcgggctctcgtcgaactc 86
>gb|AC018929.12| Oryza sativa chromosome 10 BAC OSJNBa0027L23 genomic sequence, complete sequence Length = 143961 Score = 446 bits (225), Expect = e-122 Identities = 249/257 (96%) Strand = Plus / Minus Query: 388 tccgccgggcggtggtccttgccccatccgacgccgcgggtggactcgaggtactggtcg 447 |||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 71346 tccggcgggcgggcgtccttgccccatccgacgccgcgggtggcctcgaggtactggtcg 71287 Query: 448 acgaggtggcggcacttctggtggtggttgacgccctcgatccggtagcaccagcggagg 507 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 71286 acgaggtggcggcacttctggtggtggttgacgccctcgatgcggtagcaccagcggagg 71227 Query: 508 cggtcacggatgatcttggcggtctcgatctggatccacttctcccgcaccaggtgctcc 567 ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 71226 cggtcgcggatgatcttggcggtctcgatctggatccacttctccctcaccaggtgctcc 71167 Query: 568 ctgtactccagcatcgccaccgggtccccgtacgggttcttcgggtcgaagtcatccggc 627 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 71166 ctgtactccagcatcgccaccgggtccccgtacgggttcttcgggtcgaagtcatccggc 71107 Query: 628 ggcctctcgtcgaactc 644 || |||||||||||||| Sbjct: 71106 gggctctcgtcgaactc 71090 Score = 40.1 bits (20), Expect = 8.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 346 agctactcctcgacctcgaccaccttcttggg 377 |||||||| ||| |||| |||||||||||||| Sbjct: 71486 agctactcgtcggcctcaaccaccttcttggg 71455
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 446 bits (225), Expect = e-122 Identities = 249/257 (96%) Strand = Plus / Minus Query: 388 tccgccgggcggtggtccttgccccatccgacgccgcgggtggactcgaggtactggtcg 447 |||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 22419323 tccggcgggcgggcgtccttgccccatccgacgccgcgggtggcctcgaggtactggtcg 22419264 Query: 448 acgaggtggcggcacttctggtggtggttgacgccctcgatccggtagcaccagcggagg 507 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 22419263 acgaggtggcggcacttctggtggtggttgacgccctcgatgcggtagcaccagcggagg 22419204 Query: 508 cggtcacggatgatcttggcggtctcgatctggatccacttctcccgcaccaggtgctcc 567 ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 22419203 cggtcgcggatgatcttggcggtctcgatctggatccacttctccctcaccaggtgctcc 22419144 Query: 568 ctgtactccagcatcgccaccgggtccccgtacgggttcttcgggtcgaagtcatccggc 627 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 22419143 ctgtactccagcatcgccaccgggtccccgtacgggttcttcgggtcgaagtcatccggc 22419084 Query: 628 ggcctctcgtcgaactc 644 || |||||||||||||| Sbjct: 22419083 gggctctcgtcgaactc 22419067 Score = 40.1 bits (20), Expect = 8.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 346 agctactcctcgacctcgaccaccttcttggg 377 |||||||| ||| |||| |||||||||||||| Sbjct: 22419463 agctactcgtcggcctcaaccaccttcttggg 22419432
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 446 bits (225), Expect = e-122 Identities = 249/257 (96%) Strand = Plus / Minus Query: 388 tccgccgggcggtggtccttgccccatccgacgccgcgggtggactcgaggtactggtcg 447 |||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 22431391 tccggcgggcgggcgtccttgccccatccgacgccgcgggtggcctcgaggtactggtcg 22431332 Query: 448 acgaggtggcggcacttctggtggtggttgacgccctcgatccggtagcaccagcggagg 507 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 22431331 acgaggtggcggcacttctggtggtggttgacgccctcgatgcggtagcaccagcggagg 22431272 Query: 508 cggtcacggatgatcttggcggtctcgatctggatccacttctcccgcaccaggtgctcc 567 ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 22431271 cggtcgcggatgatcttggcggtctcgatctggatccacttctccctcaccaggtgctcc 22431212 Query: 568 ctgtactccagcatcgccaccgggtccccgtacgggttcttcgggtcgaagtcatccggc 627 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 22431211 ctgtactccagcatcgccaccgggtccccgtacgggttcttcgggtcgaagtcatccggc 22431152 Query: 628 ggcctctcgtcgaactc 644 || |||||||||||||| Sbjct: 22431151 gggctctcgtcgaactc 22431135 Score = 40.1 bits (20), Expect = 8.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 346 agctactcctcgacctcgaccaccttcttggg 377 |||||||| ||| |||| |||||||||||||| Sbjct: 22431531 agctactcgtcggcctcaaccaccttcttggg 22431500
>gb|AY105336.1| Zea mays PCO107093 mRNA sequence Length = 805 Score = 333 bits (168), Expect = 4e-88 Identities = 249/276 (90%) Strand = Plus / Minus Query: 369 cttcttgggctcgtggaggtccgccgggcggtggtccttgccccatccgacgccgcgggt 428 |||||||||||||||||| || | ||||||| ||||||||||| || ||||||||||| Sbjct: 432 cttcttgggctcgtggagttcaggcgggcgggcatccttgccccaacccacgccgcgggt 373 Query: 429 ggactcgaggtactggtcgacgaggtggcggcacttctggtggtggttgacgccctcgat 488 | ||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 372 agcctctaggtattggtcgacgaggtggcggcacttctggtggtggttgatgccctcgat 313 Query: 489 ccggtagcaccagcggaggcggtcacggatgatcttggcggtctcgatctggatccactt 548 |||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||| Sbjct: 312 gcggtagcaccagcggaggcgctcccggatgatcttggcggtctcgatatggatccactt 253 Query: 549 ctcccgcaccaggtgctccctgtactccagcatcgccaccgggtccccgtacgggttctt 608 ||| ||||||||||| |||| |||||| ||||||||||||||||| | ||||||||||| Sbjct: 252 ctctcgcaccaggtgttcccggtactcgagcatcgccaccgggtcggcatacgggttctt 193 Query: 609 cgggtcgaagtcatccggcggcctctcgtcgaactc 644 ||||||||||| |||||||||| |||||||||||| Sbjct: 192 cgggtcgaagttatccggcggctgctcgtcgaactc 157
>gb|BT017001.1| Zea mays clone EK07D2309F06.c mRNA sequence Length = 706 Score = 303 bits (153), Expect = 4e-79 Identities = 225/249 (90%) Strand = Plus / Minus Query: 369 cttcttgggctcgtggaggtccgccgggcggtggtccttgccccatccgacgccgcgggt 428 |||||||||||||||||| || | ||||||| ||||||||||| || ||||||||||| Sbjct: 292 cttcttgggctcgtggagttcaggcgggcgggcatccttgccccaacccacgccgcgggt 233 Query: 429 ggactcgaggtactggtcgacgaggtggcggcacttctggtggtggttgacgccctcgat 488 | ||| ||||| ||||| ||||||||||||||||||||||||||||||| ||||||||| Sbjct: 232 agcctctaggtattggtccacgaggtggcggcacttctggtggtggttgatgccctcgat 173 Query: 489 ccggtagcaccagcggaggcggtcacggatgatcttggcggtctcgatctggatccactt 548 |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct: 172 gcggtagcaccagcggaggcgctcccggatgatcttggcggtctcgatctggatccactt 113 Query: 549 ctcccgcaccaggtgctccctgtactccagcatcgccaccgggtccccgtacgggttctt 608 ||| ||||||||||| |||| |||||| ||||||||||||||||| | ||||||||||| Sbjct: 112 ctctcgcaccaggtgttcccggtactcgagcatcgccaccgggtcggcatacgggttctt 53 Query: 609 cgggtcgaa 617 ||||||||| Sbjct: 52 cgggtcgaa 44
>dbj|AK058777.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-002-B06, full insert sequence Length = 456 Score = 272 bits (137), Expect = 1e-69 Identities = 173/185 (93%) Strand = Plus / Minus Query: 346 agctactcctcgacctcgaccaccttcttgggctcgtggaggtccgccgggcggtggtcc 405 |||||||| ||| |||| |||||||||||||| ||||| || |||| ||||||| |||| Sbjct: 185 agctactcgtcggcctcaaccaccttcttgggatcgtgcagctccggcgggcgggcgtcc 126 Query: 406 ttgccccatccgacgccgcgggtggactcgaggtactggtcgacgaggtggcggcacttc 465 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 125 ttgccccatccgacgccgcgggtggcctcgaggtactggtcgacgaggtggcggcacttc 66 Query: 466 tggtggtggttgacgccctcgatccggtagcaccagcggaggcggtcacggatgatcttg 525 ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| Sbjct: 65 tggtggtggttgacgccctcgatgcggtagcaccagcggaggcggtcgcggatgatcttg 6 Query: 526 gcggt 530 ||||| Sbjct: 5 gcggt 1
>gb|DQ226676.1| Boechera divaricarpa isolate SLW-348-443-D07 mRNA sequence Length = 335 Score = 54.0 bits (27), Expect = 6e-04 Identities = 87/107 (81%) Strand = Plus / Minus Query: 394 gggcggtggtccttgccccatccgacgccgcgggtggactcgaggtactggtcgacgagg 453 |||||||||||||| ||||| |||||||| || ||||| ||||| ||||| | || || Sbjct: 261 gggcggtggtcctttccccaaccgacgccacgagtggaatcgagatactgttgaacaaga 202 Query: 454 tggcggcacttctggtggtggttgacgccctcgatccggtagcacca 500 || ||||| ||||||| ||| ||||| || |||| ||||| ||||| Sbjct: 201 tgacggcatttctggtagtgattgactccttcgacacggtaacacca 155
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 354 ctcgacctcgaccaccttcttgg 376 ||||||||||||||||||||||| Sbjct: 4952459 ctcgacctcgaccaccttcttgg 4952481
>emb|AL133284.13| Human DNA sequence from clone RP11-67K19 on chromosome 9q33.1-34.11 Contains part of the ASTN2 gene for astrotactin 2 (KIAA0634), the TRIM32 gene for tripartite motif-containing 32, and a novel gene, complete sequence Length = 155466 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Plus Query: 257 agagaagagctgcagcagttca 278 |||||||||||||||||||||| Sbjct: 24838 agagaagagctgcagcagttca 24859
>ref|NM_112726.2| Arabidopsis thaliana unknown protein AT3G18410 mRNA, complete cds Length = 587 Score = 42.1 bits (21), Expect = 2.2 Identities = 36/41 (87%) Strand = Plus / Minus Query: 403 tccttgccccatccgacgccgcgggtggactcgaggtactg 443 ||||| ||||| ||||||||||| ||||| ||||| ||||| Sbjct: 303 tcctttccccaaccgacgccgcgagtggaatcgagatactg 263
>gb|BC072729.1| Xenopus laevis hypothetical protein LOC398535, mRNA (cDNA clone MGC:79071 IMAGE:4960316), complete cds Length = 1612 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 450 gaggtggcggcacttctggtg 470 ||||||||||||||||||||| Sbjct: 621 gaggtggcggcacttctggtg 601
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 518 tgatcttggcggtctcgatctggat 542 ||||| ||||||||||||||||||| Sbjct: 3172938 tgatcctggcggtctcgatctggat 3172914
>gb|BC043752.1| Xenopus laevis hypothetical protein LOC398535, mRNA (cDNA clone IMAGE:4889053), partial cds Length = 1168 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 450 gaggtggcggcacttctggtg 470 ||||||||||||||||||||| Sbjct: 409 gaggtggcggcacttctggtg 389
>gb|AC144476.11| Medicago truncatula clone mth2-10a6, complete sequence Length = 119355 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 93 aacacaatttttgtatgaacgaaat 117 |||||||||||||||||||| |||| Sbjct: 305 aacacaatttttgtatgaactaaat 329
>emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome Length = 5205140 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 62 gtaaatcaagatgcaaaggca 82 ||||||||||||||||||||| Sbjct: 362958 gtaaatcaagatgcaaaggca 362978
>ref|NM_203709.1| Xenopus tropicalis BAT2 domain containing 1 (bat2d), mRNA Length = 1437 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 450 gaggtggcggcacttctggtg 470 ||||||||||||||||||||| Sbjct: 416 gaggtggcggcacttctggtg 396
>gb|AY077662.1| Arabidopsis thaliana AT3g18410/MYF24_12 mRNA, complete cds Length = 321 Score = 42.1 bits (21), Expect = 2.2 Identities = 36/41 (87%) Strand = Plus / Minus Query: 403 tccttgccccatccgacgccgcgggtggactcgaggtactg 443 ||||| ||||| ||||||||||| ||||| ||||| ||||| Sbjct: 266 tcctttccccaaccgacgccgcgagtggaatcgagatactg 226
>gb|AY037256.1| Arabidopsis thaliana AT3g18410/MYF24_12 mRNA, complete cds Length = 583 Score = 42.1 bits (21), Expect = 2.2 Identities = 36/41 (87%) Strand = Plus / Minus Query: 403 tccttgccccatccgacgccgcgggtggactcgaggtactg 443 ||||| ||||| ||||||||||| ||||| ||||| ||||| Sbjct: 299 tcctttccccaaccgacgccgcgagtggaatcgagatactg 259
>emb|BX825276.1|CNS0A520 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL25ZD11 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 562 Score = 42.1 bits (21), Expect = 2.2 Identities = 36/41 (87%) Strand = Plus / Minus Query: 403 tccttgccccatccgacgccgcgggtggactcgaggtactg 443 ||||| ||||| ||||||||||| ||||| ||||| ||||| Sbjct: 282 tcctttccccaaccgacgccgcgagtggaatcgagatactg 242
>gb|AY088400.1| Arabidopsis thaliana clone 6463 mRNA, complete sequence Length = 582 Score = 42.1 bits (21), Expect = 2.2 Identities = 36/41 (87%) Strand = Plus / Minus Query: 403 tccttgccccatccgacgccgcgggtggactcgaggtactg 443 ||||| ||||| ||||||||||| ||||| ||||| ||||| Sbjct: 309 tcctttccccaaccgacgccgcgagtggaatcgagatactg 269
>dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome Length = 5277274 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 62 gtaaatcaagatgcaaaggca 82 ||||||||||||||||||||| Sbjct: 416380 gtaaatcaagatgcaaaggca 416400
>dbj|AB026658.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MYF24 Length = 88989 Score = 42.1 bits (21), Expect = 2.2 Identities = 36/41 (87%) Strand = Plus / Minus Query: 403 tccttgccccatccgacgccgcgggtggactcgaggtactg 443 ||||| ||||| ||||||||||| ||||| ||||| ||||| Sbjct: 41583 tcctttccccaaccgacgccgcgagtggaatcgagatactg 41543
>emb|AJ276753.1|ATH276753 Arabidopsis thaliana partial mRNA, clone DiDi 17T-2b Length = 350 Score = 42.1 bits (21), Expect = 2.2 Identities = 36/41 (87%) Strand = Plus / Minus Query: 403 tccttgccccatccgacgccgcgggtggactcgaggtactg 443 ||||| ||||| ||||||||||| ||||| ||||| ||||| Sbjct: 102 tcctttccccaaccgacgccgcgagtggaatcgagatactg 62
>emb|CR760514.2| Xenopus tropicalis finished cDNA, clone TEgg058f21 Length = 1321 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 450 gaggtggcggcacttctggtg 470 ||||||||||||||||||||| Sbjct: 325 gaggtggcggcacttctggtg 305
>gb|BC061373.1| Xenopus tropicalis BAT2 domain containing 1, mRNA (cDNA clone MGC:75934 IMAGE:5383830), complete cds Length = 1437 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 450 gaggtggcggcacttctggtg 470 ||||||||||||||||||||| Sbjct: 416 gaggtggcggcacttctggtg 396
>gb|CP000013.1| Borrelia garinii PBi, complete genome Length = 904246 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 207 ttccttcaacataatcatttatta 230 |||||| ||||||||||||||||| Sbjct: 539316 ttcctttaacataatcatttatta 539293
>gb|AY775884.1| Bubalus bubalis clone BBMS055 microsatellite sequence Length = 1008 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 gcaaaggcaaggacaactaa 93 |||||||||||||||||||| Sbjct: 621 gcaaaggcaaggacaactaa 640
>gb|AC163998.2| Mus musculus chromosome 15, clone RP24-326H11, complete sequence Length = 153996 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 atttttgtatgaacgaaatt 118 |||||||||||||||||||| Sbjct: 142720 atttttgtatgaacgaaatt 142701
>gb|AC124985.16| Mus musculus chromosome 8, clone RP24-230O22, complete sequence Length = 171213 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 agaggtaagagaagagctgc 269 |||||||||||||||||||| Sbjct: 170661 agaggtaagagaagagctgc 170642
>gb|DQ437742.1| Pseudomonas aeruginosa strain 6077 ExoU Island A, complete sequence Length = 81751 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 464 tctggtggtggttgacgccc 483 |||||||||||||||||||| Sbjct: 56119 tctggtggtggttgacgccc 56100
>gb|AC073162.9| Homo sapiens chromosome 10 clone RP11-536J24, complete sequence Length = 185754 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 207 ttccttcaacataatcattt 226 |||||||||||||||||||| Sbjct: 59205 ttccttcaacataatcattt 59186
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 534 gatctggatccacttctccc 553 |||||||||||||||||||| Sbjct: 3795267 gatctggatccacttctccc 3795286
>gb|AC101822.24| Mus musculus chromosome 1, clone RP24-393F8, complete sequence Length = 125941 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 ttcaacataatcatttatta 230 |||||||||||||||||||| Sbjct: 5664 ttcaacataatcatttatta 5683
>gb|AC099604.4| Mus musculus chromosome 1, clone RP23-335B22, complete sequence Length = 197338 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 ttcaacataatcatttatta 230 |||||||||||||||||||| Sbjct: 173656 ttcaacataatcatttatta 173675
>gb|AC127356.4| Mus musculus BAC clone RP23-100B5 from chromosome 8, complete sequence Length = 199258 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 250 agaggtaagagaagagctgc 269 |||||||||||||||||||| Sbjct: 153672 agaggtaagagaagagctgc 153691
>gb|AC126247.3| Mus musculus BAC clone RP24-370C15 from chromosome 13, complete sequence Length = 143813 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 566 ccctgtactccagcatcgcc 585 |||||||||||||||||||| Sbjct: 76850 ccctgtactccagcatcgcc 76831
>emb|CR665822.2|CNS0FCPW Tetraodon nigroviridis full-length cDNA Length = 1325 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 551 cccgcaccaggtgctccctg 570 |||||||||||||||||||| Sbjct: 633 cccgcaccaggtgctccctg 614
>ref|XM_777639.1| PREDICTED: Strongylocentrotus purpuratus similar to CG33174-PD, isoform D (LOC577408), mRNA Length = 2082 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 47 gtctttggtacacttgtaaa 66 |||||||||||||||||||| Sbjct: 1556 gtctttggtacacttgtaaa 1575
>ref|XM_783978.1| PREDICTED: Strongylocentrotus purpuratus similar to Cystine/glutamate transporter (Amino acid transport system xc-) (xCT) (Calcium channel blocker resistance protein CCBR1) (LOC584098), mRNA Length = 1539 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 576 cagcatcgccaccgggtccc 595 |||||||||||||||||||| Sbjct: 64 cagcatcgccaccgggtccc 45
>emb|BX248584.1| Blochmannia floridanus complete genome; segment 1/3 Length = 250050 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 cttcaacataatcatttatt 229 |||||||||||||||||||| Sbjct: 111659 cttcaacataatcatttatt 111640
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 385 aggtccgccgggcggtggtc 404 |||||||||||||||||||| Sbjct: 3300559 aggtccgccgggcggtggtc 3300578
>gb|AC087113.11| Mus Musculus Strain C57BL6/J Chromosome 15 BAC, RP23-99A15, Complete Sequence, complete sequence Length = 223882 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 atttttgtatgaacgaaatt 118 |||||||||||||||||||| Sbjct: 145013 atttttgtatgaacgaaatt 145032
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 516 gatgatcttggcggtctcgatctg 539 ||||||||| |||||||||||||| Sbjct: 1330505 gatgatcttcgcggtctcgatctg 1330482
>gb|AC107022.4| Homo sapiens 3 BAC RP11-417H23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 116557 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 85 gacaactaaacacaatttttgtat 108 ||||||||| |||||||||||||| Sbjct: 86757 gacaactaaccacaatttttgtat 86734
>gb|AC063944.25| Homo sapiens 3 BAC RP11-446H18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 180389 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 85 gacaactaaacacaatttttgtat 108 ||||||||| |||||||||||||| Sbjct: 86819 gacaactaaccacaatttttgtat 86796
>dbj|AK143335.1| Mus musculus 2 days pregnant adult female ovary cDNA, RIKEN full-length enriched library, clone:E330008H23 product:prolactin receptor, full insert sequence Length = 1394 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 atttttgtatgaacgaaatt 118 |||||||||||||||||||| Sbjct: 1351 atttttgtatgaacgaaatt 1332
>gb|AC022695.9| Homo sapiens chromosome 8, clone RP11-700E23, complete sequence Length = 184759 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 gggaaagtccaagtaaggat 149 |||||||||||||||||||| Sbjct: 122514 gggaaagtccaagtaaggat 122533
>gb|L76464.1|RIC1CP Oryza sativa oleosin (1cp) mRNA, complete cds Length = 863 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 321 ccaggaacagcaggagaagcagcc 344 |||||| ||||||||||||||||| Sbjct: 168 ccaggagcagcaggagaagcagcc 191
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 516 gatgatcttggcggtctcgatctg 539 ||||||||| |||||||||||||| Sbjct: 251179 gatgatcttcgcggtctcgatctg 251156
>dbj|AK054551.1| Mus musculus 2 days pregnant adult female ovary cDNA, RIKEN full-length enriched library, clone:E330040O11 product:prolactin receptor, full insert sequence Length = 3207 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 atttttgtatgaacgaaatt 118 |||||||||||||||||||| Sbjct: 1666 atttttgtatgaacgaaatt 1647
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 tcaagatgcaaaggcaagga 86 |||||||||||||||||||| Sbjct: 31422176 tcaagatgcaaaggcaagga 31422157
>gb|AC103881.4| Homo sapiens BAC clone RP11-638D14 from 2, complete sequence Length = 108100 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 aaaatagaaagaacttgtac 31 |||||||||||||||||||| Sbjct: 68390 aaaatagaaagaacttgtac 68409
>dbj|AP003237.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0046E05 Length = 162776 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 tcaagatgcaaaggcaagga 86 |||||||||||||||||||| Sbjct: 16240 tcaagatgcaaaggcaagga 16221
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 387 gtccgccgggcggtggtcct 406 |||||||||||||||||||| Sbjct: 6369774 gtccgccgggcggtggtcct 6369755
>gb|AE004841.1| Pseudomonas aeruginosa PAO1, section 402 of 529 of the complete genome Length = 15733 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 464 tctggtggtggttgacgccc 483 |||||||||||||||||||| Sbjct: 1054 tctggtggtggttgacgccc 1073
>ref|XM_233227.3| PREDICTED: Rattus norvegicus similar to KIAA1573 protein (predicted) (LOC298267), mRNA Length = 4250 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 ggaacagcaggagaagcagc 343 |||||||||||||||||||| Sbjct: 606 ggaacagcaggagaagcagc 625
>dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete genome Length = 3630528 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 tgaacgaaattggaaacaag 127 |||||||||||||||||||| Sbjct: 159055 tgaacgaaattggaaacaag 159074
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 516 gatgatcttggcggtctcgatctg 539 ||||||||| |||||||||||||| Sbjct: 8682548 gatgatcttcgcggtctcgatctg 8682525
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 444 gtcgacgaggtggcggcact 463 |||||||||||||||||||| Sbjct: 1620140 gtcgacgaggtggcggcact 1620159
>dbj|AK105470.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-126-A08, full insert sequence Length = 782 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 321 ccaggaacagcaggagaagcagcc 344 |||||| ||||||||||||||||| Sbjct: 88 ccaggagcagcaggagaagcagcc 111
>dbj|AK103379.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033127E10, full insert sequence Length = 860 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 321 ccaggaacagcaggagaagcagcc 344 |||||| ||||||||||||||||| Sbjct: 168 ccaggagcagcaggagaagcagcc 191
>gb|AF047025.1|AF047025 Pseudomonas aeruginosa ribosomal protein S4 (rpsD) gene, partial cds; DNA-directed RNA polymerase alpha chain (rpoA), ribosomal large subunit protein L17 (rplQ), and catalase isozyme A (katA) genes, complete cds; and bacterioferritin (bfr) gene, partial cds Length = 3604 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 464 tctggtggtggttgacgccc 483 |||||||||||||||||||| Sbjct: 2854 tctggtggtggttgacgccc 2835
>gb|U25970.1|OSU25970 Oryza sativa early embryogenesis (OSE375) mRNA, complete cds Length = 748 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 321 ccaggaacagcaggagaagcagcc 344 |||||| ||||||||||||||||| Sbjct: 137 ccaggagcagcaggagaagcagcc 160
>gb|AF022148.1|AF022148 Oryza sativa 16 kDa oleosin isoform R16 (1cp) mRNA, complete cds Length = 873 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 321 ccaggaacagcaggagaagcagcc 344 |||||| ||||||||||||||||| Sbjct: 169 ccaggagcagcaggagaagcagcc 192
>gb|AC158219.4| Mus musculus chromosome 8, clone RP23-189N10, complete sequence Length = 215819 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 aggaacagcaggagaagcag 342 |||||||||||||||||||| Sbjct: 97074 aggaacagcaggagaagcag 97055
>gb|AY548464.1| Aeromicrobium erythreum NRRL B-3381 methylmalonyl-CoA mutase beta subunit (mutA), methylmalonyl-CoA mutase alpha subunit (mutB), methylmalonyl-CoA mutase protective protein (meaB), and predicted MazG-family transcriptional regulator genes, complete cds Length = 7281 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 601 gggttcttcgggtcgaagtc 620 |||||||||||||||||||| Sbjct: 2940 gggttcttcgggtcgaagtc 2921 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,739,524 Number of Sequences: 3902068 Number of extensions: 5739524 Number of successful extensions: 101121 Number of sequences better than 10.0: 67 Number of HSP's better than 10.0 without gapping: 67 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 100173 Number of HSP's gapped (non-prelim): 948 length of query: 644 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 621 effective length of database: 17,143,297,704 effective search space: 10645987874184 effective search space used: 10645987874184 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)