ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags3p07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ234702.1|HVU234702 Hordeum vulgare genomic DNA fragment; c... 72 2e-09
2gb|AC135419.2| Oryza sativa (japonica cultivar-group) chromosome... 56 1e-04
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
4dbj|AK099540.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
5dbj|AK065065.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
6gb|AC097377.3| Homo sapiens BAC clone RP11-83F13 from 2, complet... 46 0.14
7emb|BX465854.7| Zebrafish DNA sequence from clone DKEY-208M10 in... 44 0.56
8emb|BX465192.7| Zebrafish DNA sequence from clone CH211-202P4 in... 44 0.56
9gb|AC068044.5| Homo sapiens BAC clone RP11-413N15 from 2, comple... 44 0.56
10gb|AC183540.2| Pan troglodytes BAC clone CH251-324O24 from chrom... 42 2.2
11gb|AC114288.2| Homo sapiens chromosome 5 clone CTD-2373J16, comp... 42 2.2
12gb|AC114307.2| Homo sapiens chromosome 5 clone RP11-195J17, comp... 42 2.2
13gb|AY044100.1| Campylobacter lari strain ATCC 35221 heat shock p... 42 2.2
14gb|AC025451.6| Homo sapiens chromosome 5 clone CTD-2141F16, comp... 42 2.2
15gb|AC159468.4| Mus musculus 10 BAC RP23-335A3 (Roswell Park Canc... 42 2.2
16gb|AC009376.7| Drosophila melanogaster 3 BAC RPCI98-1D4 (Roswell... 42 2.2
17gb|AC010432.6|AC010432 Homo sapiens chromosome 5 clone CTD-2202A... 42 2.2
18emb|CR388087.28| Zebrafish DNA sequence from clone DKEY-19N7 in ... 42 2.2
19emb|AL096821.3|CNS00YVG Human chromosome 14 DNA sequence BAC R-6... 42 2.2
20gb|AE003516.4| Drosophila melanogaster chromosome 3L, section 69... 42 2.2
21gb|DQ059475.1| Campylobacter lari strain ATCC 35221 60 kDa chape... 42 2.2
22gb|AY628405.1| Campylobacter lari strain L133 60 kDa chaperonin ... 40 8.8
23gb|AY628404.1| Campylobacter lari strain L71 60 kDa chaperonin (... 40 8.8
24gb|AY628403.1| Campylobacter lari strain L33 60 kDa chaperonin (... 40 8.8
25gb|AC166108.4| Mus musculus BAC clone RP23-192E10 from chromosom... 40 8.8
26gb|AC004038.1| Homo sapiens chromosome 5, BAC clone 8k5, BAC 500... 40 8.8
27ref|XM_977689.1| PREDICTED: Mus musculus RIKEN cDNA 4921505D17 g... 40 8.8
28ref|XM_621096.3| PREDICTED: Mus musculus RIKEN cDNA 4921505D17 g... 40 8.8
29ref|XM_907570.2| PREDICTED: Mus musculus RIKEN cDNA 4921505D17 g... 40 8.8
30gb|AC149473.33| Medicago truncatula clone mth2-119h6, complete s... 40 8.8
31emb|CR381597.7| Zebrafish DNA sequence from clone CH211-182L5 in... 40 8.8
32gb|AC133101.4| Mus musculus BAC clone RP23-154M23 from chromosom... 40 8.8
33gb|AC013483.7|ATAC013483 Arabidopsis thaliana chromosome III BAC... 40 8.8
34gb|BC051701.1| Mus musculus RIKEN cDNA 4921505D17 gene, mRNA (cD... 40 8.8
35gb|AC109992.6| Homo sapiens 3 BAC RP11-383G6 (Roswell Park Cance... 40 8.8
36gb|AE004408.1| Vibrio cholerae O1 biovar eltor str. N16961 chrom... 40 8.8
37emb|AL359474.16| Human DNA sequence from clone RP11-747O7 on chr... 40 8.8
38emb|AL355603.17| Human DNA sequence from clone RP11-394M3 on chr... 40 8.8
39emb|CR382133.1| Debaryomyces hansenii chromosome A of strain CBS... 40 8.8
40gb|AC162301.3| Mus musculus chromosome 15, clone RP24-282H6, com... 40 8.8
41emb|AL662838.12| Mouse DNA sequence from clone RP23-378I13 on ch... 40 8.8
42emb|AL772144.4| Zebrafish DNA sequence from clone CH211-164J3 in... 40 8.8
43gb|AC093600.3| Homo sapiens BAC clone RP11-333E5 from 4, complet... 40 8.8
44gb|AC008588.8| Homo sapiens chromosome 5 clone CTC-573M9, comple... 40 8.8
45gb|AE008402.1|AE008402 Streptococcus pneumoniae R6 section 18 of... 40 8.8
46dbj|AK014817.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 8.8
47ref|XM_393856.2| PREDICTED: Apis mellifera similar to GA19347-PA... 40 8.8
48gb|AC074395.1|AC074395 Arabidopsis thaliana chromosome 3 BAC T8G... 40 8.8
49gb|AE005672.2| Streptococcus pneumoniae TIGR4, complete genome 40 8.8
50gb|AF126061.1|AF126061 Streptococcus pneumoniae isolate SP#5 rib... 40 8.8
51gb|AF126060.1|AF126060 Streptococcus pneumoniae isolate ZR1 ribo... 40 8.8
52gb|AF126059.1|AF126059 Streptococcus pneumoniae isolate R6 ribos... 40 8.8
53emb|BX005340.7| Zebrafish DNA sequence from clone DKEY-16N15 in ... 40 8.8
54dbj|AB015476.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 8.8
55emb|AL929171.9| Zebrafish DNA sequence from clone CH211-132P20 i... 40 8.8
56dbj|AB055844.1| Samia cynthia ricini vit mRNA for vitellogenin, ... 40 8.8
57emb|CR555293.8| Zebrafish DNA sequence from clone DKEY-23P14 in ... 40 8.8
58dbj|AB053170.3| Homo sapiens genomic DNA, chromosome 4p15.3, BAC... 40 8.8
59gb|DQ059462.1| Campylobacter lari strain 4315 60 kDa chaperonin ... 40 8.8
60gb|DQ059431.1| Campylobacter lari strain 3301 60 kDa chaperonin ... 40 8.8
61gb|AC133959.4| Mus musculus BAC clone RP23-377P18 from 15, compl... 40 8.8
62emb|AL929263.4| Zebrafish DNA sequence from clone CH211-242M24 i... 40 8.8
63gb|AC151372.3| Aotus nancymaae clone CH258-368D16, complete sequ... 40 8.8
64emb|AL672243.12| Mouse DNA sequence from clone RP23-343M4 on chr... 40 8.8 
>emb|AJ234702.1|HVU234702 Hordeum vulgare genomic DNA fragment; clone MWG0988.rev
          Length = 459

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 41/43 (95%)
 Strand = Plus / Plus

                                                      
Query: 601 acacgtacgtcgtaccaaagtatgcgtncagacagtaagcaga 643
           ||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 2   acacgtacgtcgtaccaaagtatgcatccagacagtaagcaga 44
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>gb|AC135419.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0044P19, complete sequence
          Length = 176917

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 59/68 (86%), Gaps = 1/68 (1%)
 Strand = Plus / Plus

                                                                         
Query: 263   cgacaaatgtttctgaactcagatgagag-aagtttgagtctagccaattaaaccaacta 321
             |||||||||||||||||| |||||||||| ||  |||||||| ||||||||  | |||||
Sbjct: 52364 cgacaaatgtttctgaacccagatgagagaaaacttgagtcttgccaattatgctaacta 52423

                     
Query: 322   ccactgat 329
             | ||||||
Sbjct: 52424 caactgat 52431
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 59/68 (86%), Gaps = 1/68 (1%)
 Strand = Plus / Plus

                                                                            
Query: 263      cgacaaatgtttctgaactcagatgagag-aagtttgagtctagccaattaaaccaacta 321
                |||||||||||||||||| |||||||||| ||  |||||||| ||||||||  | |||||
Sbjct: 20739140 cgacaaatgtttctgaacccagatgagagaaaacttgagtcttgccaattatgctaacta 20739199

                        
Query: 322      ccactgat 329
                | ||||||
Sbjct: 20739200 caactgat 20739207
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>dbj|AK099540.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013032G17, full
           insert sequence
          Length = 2565

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 59/68 (86%), Gaps = 1/68 (1%)
 Strand = Plus / Minus

                                                                       
Query: 263 cgacaaatgtttctgaactcagatgagag-aagtttgagtctagccaattaaaccaacta 321
           |||||||||||||||||| |||||||||| ||  |||||||| ||||||||  | |||||
Sbjct: 351 cgacaaatgtttctgaacccagatgagagaaaacttgagtcttgccaattatgctaacta 292

                   
Query: 322 ccactgat 329
           | ||||||
Sbjct: 291 caactgat 284
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>dbj|AK065065.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001J20, full
           insert sequence
          Length = 2537

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 59/68 (86%), Gaps = 1/68 (1%)
 Strand = Plus / Minus

                                                                       
Query: 263 cgacaaatgtttctgaactcagatgagag-aagtttgagtctagccaattaaaccaacta 321
           |||||||||||||||||| |||||||||| ||  |||||||| ||||||||  | |||||
Sbjct: 351 cgacaaatgtttctgaacccagatgagagaaaacttgagtcttgccaattatgctaacta 292

                   
Query: 322 ccactgat 329
           | ||||||
Sbjct: 291 caactgat 284
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>gb|AC097377.3| Homo sapiens BAC clone RP11-83F13 from 2, complete sequence
          Length = 158923

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 166    tgtagaagaaacaaccatatttg 188
              |||||||||||||||||||||||
Sbjct: 118495 tgtagaagaaacaaccatatttg 118517
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>emb|BX465854.7| Zebrafish DNA sequence from clone DKEY-208M10 in linkage group 12,
              complete sequence
          Length = 204314

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 550    tattgtacatgatatagtaagg 571
              ||||||||||||||||||||||
Sbjct: 198256 tattgtacatgatatagtaagg 198277
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>emb|BX465192.7| Zebrafish DNA sequence from clone CH211-202P4 in linkage group 12,
             complete sequence
          Length = 200890

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 550   tattgtacatgatatagtaagg 571
             ||||||||||||||||||||||
Sbjct: 60890 tattgtacatgatatagtaagg 60869
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>gb|AC068044.5| Homo sapiens BAC clone RP11-413N15 from 2, complete sequence
          Length = 182411

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 64    atgtctattattacaatatataatgt 89
             |||| |||||||||||||||||||||
Sbjct: 64289 atgtatattattacaatatataatgt 64264
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>gb|AC183540.2| Pan troglodytes BAC clone CH251-324O24 from chromosome 7, complete
             sequence
          Length = 176962

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 55    aaagcagatatgtctattattacaa 79
             ||||||||||| |||||||||||||
Sbjct: 99575 aaagcagatatatctattattacaa 99599
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>gb|AC114288.2| Homo sapiens chromosome 5 clone CTD-2373J16, complete sequence
          Length = 84270

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 15  taacacgaaggtagtatattacaattttt 43
           ||||||||| ||| |||||||||||||||
Sbjct: 843 taacacgaaagtaatatattacaattttt 871
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>gb|AC114307.2| Homo sapiens chromosome 5 clone RP11-195J17, complete sequence
          Length = 83767

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 15    taacacgaaggtagtatattacaattttt 43
             ||||||||| ||| |||||||||||||||
Sbjct: 77602 taacacgaaagtaatatattacaattttt 77630
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>gb|AY044100.1| Campylobacter lari strain ATCC 35221 heat shock protein 60 kDa
           (hsp60) gene, partial cds
          Length = 556

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 365 gaaaaaatgacagctgaatta 385
           |||||||||||||||||||||
Sbjct: 353 gaaaaaatgacagctgaatta 373
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>gb|AC025451.6| Homo sapiens chromosome 5 clone CTD-2141F16, complete sequence
          Length = 136371

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 190   aagagctacaagatacagatc 210
             |||||||||||||||||||||
Sbjct: 44088 aagagctacaagatacagatc 44068
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>gb|AC159468.4| Mus musculus 10 BAC RP23-335A3 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 214532

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 62     atatgtctattattacaatatataa 86
              |||||| ||||||||||||||||||
Sbjct: 145114 atatgtgtattattacaatatataa 145138
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>gb|AC009376.7| Drosophila melanogaster 3 BAC RPCI98-1D4 (Roswell Park Cancer Institute
              Human PAC library) complete sequence
          Length = 183948

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 346    gactgagcaataaaaatacgaaaaaatga 374
              |||||| |||||||||||| |||||||||
Sbjct: 161958 gactgatcaataaaaatacaaaaaaatga 161986
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>gb|AC010432.6|AC010432 Homo sapiens chromosome 5 clone CTD-2202A17, complete sequence
          Length = 148697

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 190   aagagctacaagatacagatc 210
             |||||||||||||||||||||
Sbjct: 15859 aagagctacaagatacagatc 15839
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>emb|CR388087.28| Zebrafish DNA sequence from clone DKEY-19N7 in linkage group 22,
             complete sequence
          Length = 210107

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 406   cccttttggccttaattaatt 426
             |||||||||||||||||||||
Sbjct: 31452 cccttttggccttaattaatt 31432
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>emb|AL096821.3|CNS00YVG Human chromosome 14 DNA sequence BAC R-677J5 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 209111

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 211   aagaatagaaacaaggcacaa 231
             |||||||||||||||||||||
Sbjct: 57052 aagaatagaaacaaggcacaa 57032
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>gb|AE003516.4| Drosophila melanogaster chromosome 3L, section 69 of 83 of the
            complete sequence
          Length = 305312

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 346  gactgagcaataaaaatacgaaaaaatga 374
            |||||| |||||||||||| |||||||||
Sbjct: 9596 gactgatcaataaaaatacaaaaaaatga 9568
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>gb|DQ059475.1| Campylobacter lari strain ATCC 35221 60 kDa chaperonin (cpn60)
           gene, partial cds
          Length = 555

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 365 gaaaaaatgacagctgaatta 385
           |||||||||||||||||||||
Sbjct: 352 gaaaaaatgacagctgaatta 372
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>gb|AY628405.1| Campylobacter lari strain L133 60 kDa chaperonin (groEL) gene,
           partial cds
          Length = 541

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 365 gaaaaaatgacagctgaatt 384
           ||||||||||||||||||||
Sbjct: 344 gaaaaaatgacagctgaatt 363
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>gb|AY628404.1| Campylobacter lari strain L71 60 kDa chaperonin (groEL) gene,
           partial cds
          Length = 541

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 365 gaaaaaatgacagctgaatt 384
           ||||||||||||||||||||
Sbjct: 344 gaaaaaatgacagctgaatt 363
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>gb|AY628403.1| Campylobacter lari strain L33 60 kDa chaperonin (groEL) gene,
           partial cds
          Length = 541

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 365 gaaaaaatgacagctgaatt 384
           ||||||||||||||||||||
Sbjct: 344 gaaaaaatgacagctgaatt 363
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>gb|AC166108.4| Mus musculus BAC clone RP23-192E10 from chromosome 1, complete sequence
          Length = 188836

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 162    gtcctgtagaagaaacaaccatat 185
              ||||||||||||||||||| ||||
Sbjct: 153076 gtcctgtagaagaaacaacaatat 153053
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>gb|AC004038.1| Homo sapiens chromosome 5, BAC clone 8k5, BAC 5002 (LBNL H102),
             complete sequence
          Length = 101615

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 351   agcaataaaaatacgaaaaaatga 374
             |||||||||||||| |||||||||
Sbjct: 95967 agcaataaaaatacaaaaaaatga 95944
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>ref|XM_977689.1| PREDICTED: Mus musculus RIKEN cDNA 4921505D17 gene (4921505D17Rik),
            mRNA
          Length = 5908

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 228  acaaaaacaagcaatccatg 247
            ||||||||||||||||||||
Sbjct: 4627 acaaaaacaagcaatccatg 4646
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>ref|XM_621096.3| PREDICTED: Mus musculus RIKEN cDNA 4921505D17 gene (4921505D17Rik),
            mRNA
          Length = 5908

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 228  acaaaaacaagcaatccatg 247
            ||||||||||||||||||||
Sbjct: 4627 acaaaaacaagcaatccatg 4646
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>ref|XM_907570.2| PREDICTED: Mus musculus RIKEN cDNA 4921505D17 gene (4921505D17Rik),
            mRNA
          Length = 5908

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 228  acaaaaacaagcaatccatg 247
            ||||||||||||||||||||
Sbjct: 4627 acaaaaacaagcaatccatg 4646
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>gb|AC149473.33| Medicago truncatula clone mth2-119h6, complete sequence
          Length = 128535

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 513    taaaaaagaaggcagcatcaaata 536
              ||||| ||||||||||||||||||
Sbjct: 112937 taaaatagaaggcagcatcaaata 112914
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>emb|CR381597.7| Zebrafish DNA sequence from clone CH211-182L5 in linkage group 23,
            complete sequence
          Length = 41390

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 534  atactatagtaattattatt 553
            ||||||||||||||||||||
Sbjct: 2543 atactatagtaattattatt 2524
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>gb|AC133101.4| Mus musculus BAC clone RP23-154M23 from chromosome 15, complete sequence
          Length = 206189

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 366    aaaaaatgacagctgaattatgaa 389
              ||||||||||||||||| ||||||
Sbjct: 131110 aaaaaatgacagctgaactatgaa 131087
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>gb|AC013483.7|ATAC013483 Arabidopsis thaliana chromosome III BAC F17A17 genomic sequence, complete
              sequence
          Length = 121054

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 534    atactatagtaattattatt 553
              ||||||||||||||||||||
Sbjct: 118144 atactatagtaattattatt 118163
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>gb|BC051701.1| Mus musculus RIKEN cDNA 4921505D17 gene, mRNA (cDNA clone
            IMAGE:4219467), containing frame-shift errors
          Length = 3141

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 228  acaaaaacaagcaatccatg 247
            ||||||||||||||||||||
Sbjct: 2592 acaaaaacaagcaatccatg 2611
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>gb|AC109992.6| Homo sapiens 3 BAC RP11-383G6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 112544

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 531   caaatactatagtaattattattg 554
             |||| |||||||||||||||||||
Sbjct: 52302 caaacactatagtaattattattg 52279
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>gb|AE004408.1| Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, section 65
            of 93 of the complete chromosome
          Length = 10355

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 511  cctaaaaaagaaggcagcatcaaa 534
            |||||||||||||||| |||||||
Sbjct: 7735 cctaaaaaagaaggcaccatcaaa 7758
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>emb|AL359474.16| Human DNA sequence from clone RP11-747O7 on chromosome 6, complete
             sequence
          Length = 129451

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 75    tacaatatataatgtgcatt 94
             ||||||||||||||||||||
Sbjct: 10817 tacaatatataatgtgcatt 10836
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>emb|AL355603.17| Human DNA sequence from clone RP11-394M3 on chromosome 13 Contains the
             5' end of a novel gene (KIAA1165) (likely ortholog of
             mouse Nedd4 WW domain-binding protein 5A), a novel gene
             and a CpG island, complete sequence
          Length = 101771

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 338   taaagatggactgagcaata 357
             ||||||||||||||||||||
Sbjct: 59287 taaagatggactgagcaata 59306
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>emb|CR382133.1| Debaryomyces hansenii chromosome A of strain CBS767 of Debaryomyces
              hansenii
          Length = 1249565

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 218    gaaacaaggcacaaaaacaagcaa 241
              |||| |||||||||||||||||||
Sbjct: 912878 gaaaaaaggcacaaaaacaagcaa 912901
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>gb|AC162301.3| Mus musculus chromosome 15, clone RP24-282H6, complete sequence
          Length = 171176

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 351    agcaataaaaatacgaaaaaatga 374
              ||||||||||||| ||||||||||
Sbjct: 151323 agcaataaaaataagaaaaaatga 151300
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>emb|AL662838.12| Mouse DNA sequence from clone RP23-378I13 on chromosome 11 Contains the
              3' end of the Mbtd1 gene for mbt domain containing 1, the
              Nme2 gene for expressed in non-metastatic cells 2 protein,
              the Nme1 gene for expressed in non-metastatic cells 1
              protein, the Spag9 gene for sperm associated antigen 9 and
              a ribosomal protein L27 (Rpl27) pseudogene, complete
              sequence
          Length = 215435

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 59     cagatatgtctattattaca 78
              ||||||||||||||||||||
Sbjct: 173281 cagatatgtctattattaca 173262
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>emb|AL772144.4| Zebrafish DNA sequence from clone CH211-164J3 in linkage group 3
             Contains three CpG islands, complete sequence
          Length = 153837

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 511   cctaaaaaagaaggcagcat 530
             ||||||||||||||||||||
Sbjct: 77711 cctaaaaaagaaggcagcat 77730
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>gb|AC093600.3| Homo sapiens BAC clone RP11-333E5 from 4, complete sequence
          Length = 165536

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 278    aactcagatgagagaagttt 297
              ||||||||||||||||||||
Sbjct: 107499 aactcagatgagagaagttt 107480
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>gb|AC008588.8| Homo sapiens chromosome 5 clone CTC-573M9, complete sequence
          Length = 213167

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 351    agcaataaaaatacgaaaaaatga 374
              |||||||||||||| |||||||||
Sbjct: 165778 agcaataaaaatacaaaaaaatga 165801
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>gb|AE008402.1|AE008402 Streptococcus pneumoniae R6 section 18 of 184 of the complete genome
          Length = 11941

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 226  gcacaaaaacaagcaatcca 245
            ||||||||||||||||||||
Sbjct: 1126 gcacaaaaacaagcaatcca 1145
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>dbj|AK014817.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4921505D17 product:unclassifiable, full
           insert sequence
          Length = 1823

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 228 acaaaaacaagcaatccatg 247
           ||||||||||||||||||||
Sbjct: 542 acaaaaacaagcaatccatg 561
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>ref|XM_393856.2| PREDICTED: Apis mellifera similar to GA19347-PA (LOC410376), mRNA
          Length = 806

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 542 gtaattattattgtacatgatata 565
           |||||||| |||||||||||||||
Sbjct: 754 gtaattataattgtacatgatata 777
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>gb|AC074395.1|AC074395 Arabidopsis thaliana chromosome 3 BAC T8G24 genomic sequence,
            complete sequence
          Length = 29605

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 534  atactatagtaattattatt 553
            ||||||||||||||||||||
Sbjct: 2600 atactatagtaattattatt 2619
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>gb|AE005672.2| Streptococcus pneumoniae TIGR4, complete genome
          Length = 2160842

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 226    gcacaaaaacaagcaatcca 245
              ||||||||||||||||||||
Sbjct: 197135 gcacaaaaacaagcaatcca 197154
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>gb|AF126061.1|AF126061 Streptococcus pneumoniae isolate SP#5 ribosomal protein operon,
            partial sequence
          Length = 4255

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 226  gcacaaaaacaagcaatcca 245
            ||||||||||||||||||||
Sbjct: 1977 gcacaaaaacaagcaatcca 1996
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>gb|AF126060.1|AF126060 Streptococcus pneumoniae isolate ZR1 ribosomal protein operon,
            partial sequence
          Length = 4255

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 226  gcacaaaaacaagcaatcca 245
            ||||||||||||||||||||
Sbjct: 1977 gcacaaaaacaagcaatcca 1996
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>gb|AF126059.1|AF126059 Streptococcus pneumoniae isolate R6 ribosomal protein operon, partial
            sequence
          Length = 4255

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 226  gcacaaaaacaagcaatcca 245
            ||||||||||||||||||||
Sbjct: 1977 gcacaaaaacaagcaatcca 1996
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>emb|BX005340.7| Zebrafish DNA sequence from clone DKEY-16N15 in linkage group 8,
             complete sequence
          Length = 119181

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 76    acaatatataatgtgcattc 95
             ||||||||||||||||||||
Sbjct: 94471 acaatatataatgtgcattc 94490
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>dbj|AB015476.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNC6
          Length = 82952

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 133  ttcgcacttcaactttctta 152
            ||||||||||||||||||||
Sbjct: 5748 ttcgcacttcaactttctta 5729
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>emb|AL929171.9| Zebrafish DNA sequence from clone CH211-132P20 in linkage group 4,
              complete sequence
          Length = 176577

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 532    aaatactatagtaattatta 551
              ||||||||||||||||||||
Sbjct: 153062 aaatactatagtaattatta 153081
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>dbj|AB055844.1| Samia cynthia ricini vit mRNA for vitellogenin, complete cds
          Length = 5788

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 63   tatgtctattattacaatatataatgtg 90
            ||||| |||||||| |||||||||||||
Sbjct: 5465 tatgtatattattaaaatatataatgtg 5492
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>emb|CR555293.8| Zebrafish DNA sequence from clone DKEY-23P14 in linkage group 11,
              complete sequence
          Length = 220631

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 409    ttttggccttaattaattgt 428
              ||||||||||||||||||||
Sbjct: 200005 ttttggccttaattaattgt 199986
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>dbj|AB053170.3| Homo sapiens genomic DNA, chromosome 4p15.3, BAC clone:395N09,
             containing QDPR gene for dihydropteridine reductase,
             complete cds
          Length = 128800

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 278   aactcagatgagagaagttt 297
             ||||||||||||||||||||
Sbjct: 72561 aactcagatgagagaagttt 72580
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>gb|DQ059462.1| Campylobacter lari strain 4315 60 kDa chaperonin (cpn60) gene,
           partial cds
          Length = 555

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 365 gaaaaaatgacagctgaatt 384
           ||||||||||||||||||||
Sbjct: 352 gaaaaaatgacagctgaatt 371
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>gb|DQ059431.1| Campylobacter lari strain 3301 60 kDa chaperonin (cpn60) gene,
           partial cds
          Length = 555

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 365 gaaaaaatgacagctgaatt 384
           ||||||||||||||||||||
Sbjct: 352 gaaaaaatgacagctgaatt 371
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>gb|AC133959.4| Mus musculus BAC clone RP23-377P18 from 15, complete sequence
          Length = 143812

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 351    agcaataaaaatacgaaaaaatga 374
              ||||||||||||| ||||||||||
Sbjct: 128846 agcaataaaaataagaaaaaatga 128869
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>emb|AL929263.4| Zebrafish DNA sequence from clone CH211-242M24 in linkage group 8,
             complete sequence
          Length = 150413

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 76    acaatatataatgtgcattc 95
             ||||||||||||||||||||
Sbjct: 91104 acaatatataatgtgcattc 91123
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>gb|AC151372.3| Aotus nancymaae clone CH258-368D16, complete sequence
          Length = 139897

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 353   caataaaaatacgaaaaaat 372
             ||||||||||||||||||||
Sbjct: 82939 caataaaaatacgaaaaaat 82920
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>emb|AL672243.12| Mouse DNA sequence from clone RP23-343M4 on chromosome X, complete
             sequence
          Length = 184872

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 228   acaaaaacaagcaatccatg 247
             ||||||||||||||||||||
Sbjct: 10565 acaaaaacaagcaatccatg 10584


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,695,111
Number of Sequences: 3902068
Number of extensions: 6695111
Number of successful extensions: 152618
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 152394
Number of HSP's gapped (non-prelim): 224
length of query: 643
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 620
effective length of database: 17,143,297,704
effective search space: 10628844576480
effective search space used: 10628844576480
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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