ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags3p06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009646.1| Triticum aestivum clone wrsu1.pk0006.a3:fis, full... 870 0.0
2ref|XM_464784.1| Oryza sativa (japonica cultivar-group), mRNA 281 1e-72
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 272 1e-69
4dbj|AP005756.3| Oryza sativa (japonica cultivar-group) genomic D... 272 1e-69
5gb|AY568677.1| Oryza sativa (japonica cultivar-group) proline- a... 270 4e-69
6dbj|AK058752.1| Oryza sativa (japonica cultivar-group) cDNA clon... 228 2e-56
7ref|NM_191846.1| Oryza sativa (japonica cultivar-group), predic... 52 0.002
8dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
9dbj|AP003343.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
10dbj|AK100192.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
11gb|AC010242.7| Homo sapiens chromosome 5 clone CTC-359E10, compl... 46 0.12
12gb|AC008816.8| Homo sapiens chromosome 5 clone CTD-2122K17, comp... 46 0.12
13gb|AC010280.7| Homo sapiens chromosome 5 clone CTC-537E7, comple... 46 0.12
14gb|AC017093.3|AC017093 Homo sapiens BAC clone RP11-511G7 from 5,... 46 0.12
15gb|AE014846.1| Plasmodium falciparum 3D7 chromosome 12, section ... 46 0.12
16gb|AY126436.1| Drosophila nigrodunni yellow (yellow) gene, parti... 44 0.48
17gb|AC010157.12| Homo sapiens chromosome 10 clone RP11-202D18, co... 44 0.48
18gb|AC118627.6| Mus musculus chromosome 15, clone RP24-91E8, comp... 42 1.9
19gb|AY582740.1| Chlamydomonas reinhardtii Fe-hydrogenase assembly... 42 1.9
20ref|XM_451567.1| Kluyveromyces lactis NRRL Y-1140, KLLA0B00825g ... 42 1.9
21ref|XM_672091.1| Plasmodium berghei strain ANKA queuine tRNA-rib... 42 1.9
22gb|AC129886.3| Atelerix albiventris clone LB4-234A16, complete s... 42 1.9
23emb|CR382122.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 42 1.9
24gb|AC159301.2| Mus musculus BAC clone RP23-213B1 from chromosome... 42 1.9
25gb|DP000003.1| Atelerix albiventris target 1 genomic scaffold 42 1.9
26gb|CP000082.1| Psychrobacter arcticus 273-4, complete genome 40 7.5
27gb|AC102545.9| Mus musculus chromosome 9, clone RP23-118J13, com... 40 7.5
28gb|AC007245.3| Homo sapiens BAC clone RP11-273L18 from 7, comple... 40 7.5
29emb|CT025841.2| Medicago truncatula chromosome 5 clone mth2-131j... 40 7.5
30gb|AC010099.10| Homo sapiens BAC clone RP11-420H19 from 7, compl... 40 7.5
31emb|AL161517.2|ATCHRIV29 Arabidopsis thaliana DNA chromosome 4, ... 40 7.5
32emb|AL049524.1|ATF7L13 Arabidopsis thaliana DNA chromosome 4, BA... 40 7.5
33gb|AY113188.1| Mastigamoeba balamuthi aldehyde-alcohol dehydroge... 40 7.5
34emb|BX470154.5| Zebrafish DNA sequence from clone CH211-81N22, c... 40 7.5
35gb|AC093597.3| Homo sapiens BAC clone RP11-187O17 from 4, comple... 40 7.5
36gb|CP000249.1| Frankia sp. CcI3, complete genome 40 7.5
37dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
38dbj|AP004571.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
39dbj|AP004236.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
40dbj|AB019225.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 7.5
41dbj|AK120657.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.5
42gb|AF118222.1|F3H7 Arabidopsis thaliana BAC F3H7 40 7.5
43gb|AF142686.1| Cyclolobium nutans maturase-like protein (matK) g... 40 7.5
44gb|AC006120.1|AC006120 Homo sapiens chromosome 17, clone hRPK.34... 40 7.5
45gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome 40 7.5
46dbj|AP006365.1| Lotus japonicus genomic DNA, chromosome 1, clone... 40 7.5
47gb|AC155302.2| Mus musculus BAC clone RP24-227A11 from chromosom... 40 7.5
48gb|AC140392.3| Mus musculus BAC clone RP24-89F9 from chromosome ... 40 7.5 
>gb|BT009646.1| Triticum aestivum clone wrsu1.pk0006.a3:fis, full insert mRNA
           sequence
          Length = 936

 Score =  870 bits (439), Expect = 0.0
 Identities = 506/527 (96%), Gaps = 1/527 (0%)
 Strand = Plus / Plus

                                                                       
Query: 25  tagatagtgata-tacatgataaataacaaaaaatacgataaatatatcaagccacaaga 83
           |||||||||||| |||||||||||  |  |||||||| | ||||||||||||||||||||
Sbjct: 69  tagatagtgatattacatgataaaacaacaaaaatacaagaaatatatcaagccacaaga 128

                                                                       
Query: 84  tagcatcaatcaagaaaaatgcgtggtaggaagaaatttagccaagaaacacccatgact 143
           |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 129 tagcatcaatcaagaaaaatgcgtgggaggaagaaatttagccaagaaacaccaatgact 188

                                                                       
Query: 144 aaaactagtagtgggattcatttgccttcttgaagaccccagcttgggcagaagcagcac 203
           |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 aaaattagtagtggaattcatttgccttcttgaagaccccagcttgggcagaagcagcac 248

                                                                       
Query: 204 tatcagaggtcgcggccacgacgatgcagtccttcacctgctgggttgtaaatgggaact 263
            |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 249 catcagaggtcacggccacgacgatgcagtccttcacctgctgggtggtaaatgggaact 308

                                                                       
Query: 264 tgttgttcacaatggagttgaggtatgcagctgccccctcgcgtatcagggcgccaatac 323
           | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 309 tcttgttcacaatggagttgaggtatgcagctgccccctcacgtatcagggcgccaatac 368

                                                                       
Query: 324 catcagttctagtgtttgagagtgcatcatgcatatttcctagcttcttgccacctatca 383
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 catcagttctagtgtttgagagtgcatcatgcatatttcctagcttcttgccacctatca 428

                                                                       
Query: 384 tactgcatgcagcaccaaatgtcttgccgatgttgccaagggacccaatagctgcaatta 443
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 429 tactgcatgcagcaccaaatgtcttgccgatgttgccaagggacccaatagctgcaacta 488

                                                                       
Query: 444 tagcgtctgggtgattcttccagaagtcgcaggatccaatgaatccatgcttctttggac 503
           |||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 489 tagcatctgggtgattcttccagtagtcgcaggatccaatgaacccatgcttctttggac 548

                                                          
Query: 504 ttgcagggacttcatgggaaggtgtacttggggtgctcggtgtagtg 550
           |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 549 ttgcagggacatcatgggaaggtgtacttggggtgctcggtgtagtg 595
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>ref|XM_464784.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 660

 Score =  281 bits (142), Expect = 1e-72
 Identities = 286/334 (85%)
 Strand = Plus / Minus

                                                                       
Query: 148 ctagtagtgggattcatttgccttcttgaagaccccagcttgggcagaagcagcactatc 207
           |||||||||  | ||||||||||||||||||| | |||| |||| ||||||||| | |||
Sbjct: 660 ctagtagtgataatcatttgccttcttgaagatctcagcctgggaagaagcagcgccatc 601

                                                                       
Query: 208 agaggtcgcggccacgacgatgcagtccttcacctgctgggttgtaaatgggaacttgtt 267
           |||||||  ||||||||||||||| ||||| ||||| ||||| ||||| ||||| || ||
Sbjct: 600 agaggtcatggccacgacgatgcaatccttaacctgttgggtggtaaaagggaatttctt 541

                                                                       
Query: 268 gttcacaatggagttgaggtatgcagctgccccctcgcgtatcagggcgccaataccatc 327
           |||||||||||||||||||||||||||||| |||||||| | ||| || ||| |||||||
Sbjct: 540 gttcacaatggagttgaggtatgcagctgctccctcgcggagcagagcaccagtaccatc 481

                                                                       
Query: 328 agttctagtgtttgagagtgcatcatgcatatttcctagcttcttgccacctatcatact 387
           ||||| ||||||||| ||||||||||| | |||| ||||||||||||||   |||| |||
Sbjct: 480 agttccagtgtttgaaagtgcatcatgaagattttctagcttcttgccagtgatcaaact 421

                                                                       
Query: 388 gcatgcagcaccaaatgtcttgccgatgttgccaagggacccaatagctgcaattatagc 447
           ||| |||| ||| | ||||||||| |||| ||||||||||||||||||||  || ||| |
Sbjct: 420 gcaagcagtaccgagtgtcttgccaatgtcgccaagggacccaatagctgagatgataac 361

                                             
Query: 448 gtctgggtgattcttccagaagtcgcaggatcca 481
            ||||| || ||||||||| | ||||||||||||
Sbjct: 360 atctggatggttcttccagtaatcgcaggatcca 327
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  272 bits (137), Expect = 1e-69
 Identities = 275/321 (85%)
 Strand = Plus / Plus

                                                                           
Query: 146     aactagtagtgggattcatttgccttcttgaagaccccagcttgggcagaagcagcacta 205
               |||||||||||  | ||||||||||||||||||| | |||| |||| ||||||||| | |
Sbjct: 7323154 aactagtagtgataatcatttgccttcttgaagatctcagcctgggaagaagcagcgcca 7323213

                                                                           
Query: 206     tcagaggtcgcggccacgacgatgcagtccttcacctgctgggttgtaaatgggaacttg 265
               |||||||||  ||||||||||||||| ||||| ||||| ||||| ||||| ||||| || 
Sbjct: 7323214 tcagaggtcatggccacgacgatgcaatccttaacctgttgggtggtaaaagggaatttc 7323273

                                                                           
Query: 266     ttgttcacaatggagttgaggtatgcagctgccccctcgcgtatcagggcgccaatacca 325
               |||||||||||||||||||||||||||||||| |||||||| | ||| || ||| |||||
Sbjct: 7323274 ttgttcacaatggagttgaggtatgcagctgctccctcgcggagcagagcaccagtacca 7323333

                                                                           
Query: 326     tcagttctagtgtttgagagtgcatcatgcatatttcctagcttcttgccacctatcata 385
               ||||||| ||||||||| ||||||||||| | |||| ||||||||||||||   |||| |
Sbjct: 7323334 tcagttccagtgtttgaaagtgcatcatgaagattttctagcttcttgccagtgatcaaa 7323393

                                                                           
Query: 386     ctgcatgcagcaccaaatgtcttgccgatgttgccaagggacccaatagctgcaattata 445
               ||||| |||| ||| | ||||||||| |||| ||||||||||||||||||||  || |||
Sbjct: 7323394 ctgcaagcagtaccgagtgtcttgccaatgtcgccaagggacccaatagctgagatgata 7323453

                                    
Query: 446     gcgtctgggtgattcttccag 466
                | ||||| || |||||||||
Sbjct: 7323454 acatctggatggttcttccag 7323474
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>dbj|AP005756.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0035N08
          Length = 136267

 Score =  272 bits (137), Expect = 1e-69
 Identities = 275/321 (85%)
 Strand = Plus / Plus

                                                                         
Query: 146   aactagtagtgggattcatttgccttcttgaagaccccagcttgggcagaagcagcacta 205
             |||||||||||  | ||||||||||||||||||| | |||| |||| ||||||||| | |
Sbjct: 98962 aactagtagtgataatcatttgccttcttgaagatctcagcctgggaagaagcagcgcca 99021

                                                                         
Query: 206   tcagaggtcgcggccacgacgatgcagtccttcacctgctgggttgtaaatgggaacttg 265
             |||||||||  ||||||||||||||| ||||| ||||| ||||| ||||| ||||| || 
Sbjct: 99022 tcagaggtcatggccacgacgatgcaatccttaacctgttgggtggtaaaagggaatttc 99081

                                                                         
Query: 266   ttgttcacaatggagttgaggtatgcagctgccccctcgcgtatcagggcgccaatacca 325
             |||||||||||||||||||||||||||||||| |||||||| | ||| || ||| |||||
Sbjct: 99082 ttgttcacaatggagttgaggtatgcagctgctccctcgcggagcagagcaccagtacca 99141

                                                                         
Query: 326   tcagttctagtgtttgagagtgcatcatgcatatttcctagcttcttgccacctatcata 385
             ||||||| ||||||||| ||||||||||| | |||| ||||||||||||||   |||| |
Sbjct: 99142 tcagttccagtgtttgaaagtgcatcatgaagattttctagcttcttgccagtgatcaaa 99201

                                                                         
Query: 386   ctgcatgcagcaccaaatgtcttgccgatgttgccaagggacccaatagctgcaattata 445
             ||||| |||| ||| | ||||||||| |||| ||||||||||||||||||||  || |||
Sbjct: 99202 ctgcaagcagtaccgagtgtcttgccaatgtcgccaagggacccaatagctgagatgata 99261

                                  
Query: 446   gcgtctgggtgattcttccag 466
              | ||||| || |||||||||
Sbjct: 99262 acatctggatggttcttccag 99282
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>gb|AY568677.1| Oryza sativa (japonica cultivar-group) proline- and threonine-rich
           protein mRNA, complete cds
          Length = 902

 Score =  270 bits (136), Expect = 4e-69
 Identities = 286/336 (85%)
 Strand = Plus / Minus

                                                                       
Query: 146 aactagtagtgggattcatttgccttcttgaagaccccagcttgggcagaagcagcacta 205
           |||||||||||  | ||||||||||||||||||| | |||| |||| ||||||||| | |
Sbjct: 726 aactagtagtgataatcatttgccttcttgaagatctcagcctgggaagaagcagcgcca 667

                                                                       
Query: 206 tcagaggtcgcggccacgacgatgcagtccttcacctgctgggttgtaaatgggaacttg 265
           |||||||||  ||||||||||||||| ||||| ||||| ||||| ||||| ||||| || 
Sbjct: 666 tcagaggtcatggccacgacgatgcaatccttaacctgttgggtggtaaaagggaatttc 607

                                                                       
Query: 266 ttgttcacaatggagttgaggtatgcagctgccccctcgcgtatcagggcgccaatacca 325
           |||||||||||||||||||||||||||||||| |||||||| | ||| || ||| |||||
Sbjct: 606 ttgttcacaatggagttgaggtatgcagctgctccctcgcggagcagagcaccagtacca 547

                                                                       
Query: 326 tcagttctagtgtttgagagtgcatcatgcatatttcctagcttcttgccacctatcata 385
           ||||||| ||||||||| ||||||||||| | |||| ||||||||||||||   |||| |
Sbjct: 546 tcagttccagtgtttgaaagtgcatcatgaagattttctagcttcttgccagtgatcaaa 487

                                                                       
Query: 386 ctgcatgcagcaccaaatgtcttgccgatgttgccaagggacccaatagctgcaattata 445
           ||||| |||| | | | |||| |||| |||| ||||||||||||||||||||  || |||
Sbjct: 486 ctgcaagcagtatcgagtgtcatgccaatgtcgccaagggacccaatagctgagatgata 427

                                               
Query: 446 gcgtctgggtgattcttccagaagtcgcaggatcca 481
            | ||||| || ||||||||| | ||||||||||||
Sbjct: 426 acatctggatggttcttccagtaatcgcaggatcca 391
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>dbj|AK058752.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-H10, full
           insert sequence
          Length = 377

 Score =  228 bits (115), Expect = 2e-56
 Identities = 202/231 (87%)
 Strand = Plus / Minus

                                                                       
Query: 146 aactagtagtgggattcatttgccttcttgaagaccccagcttgggcagaagcagcacta 205
           |||||||||||  | ||||||||||||||||||| | |||| |||| ||||||||| | |
Sbjct: 239 aactagtagtgataatcatttgccttcttgaagatctcagcctgggaagaagcagcgcca 180

                                                                       
Query: 206 tcagaggtcgcggccacgacgatgcagtccttcacctgctgggttgtaaatgggaacttg 265
           |||||||||  ||||||||||||||| ||||| ||||| ||||| ||||| ||||| || 
Sbjct: 179 tcagaggtcatggccacgacgatgcaatccttaacctgttgggtggtaaaagggaatttc 120

                                                                       
Query: 266 ttgttcacaatggagttgaggtatgcagctgccccctcgcgtatcagggcgccaatacca 325
           |||||||||||||||||||||||||||||||| |||||||| | ||| || ||| |||||
Sbjct: 119 ttgttcacaatggagttgaggtatgcagctgctccctcgcggagcagagcaccagtacca 60

                                                              
Query: 326 tcagttctagtgtttgagagtgcatcatgcatatttcctagcttcttgcca 376
           ||||||| ||||||||| ||||||||||| | |||| ||||||||||||||
Sbjct: 59  tcagttccagtgtttgaaagtgcatcatgaagattttctagcttcttgcca 9
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>ref|NM_191846.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1944

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                  
Query: 232  gtccttcacctgctgggttgtaaatgggaacttgttgttcacaatggagttgag 285
            ||||||||||||||| || || || |||||| || ||||||| |||||||||||
Sbjct: 1848 gtccttcacctgctgcgtggtgaaggggaacctgctgttcaccatggagttgag 1795
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                      
Query: 232      gtccttcacctgctgggttgtaaatgggaacttgttgttcacaatggagttgag 285
                ||||||||||||||| || || || |||||| || ||||||| |||||||||||
Sbjct: 30289367 gtccttcacctgctgcgtggtgaaggggaacctgctgttcaccatggagttgag 30289314
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>dbj|AP003343.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0042A10
          Length = 146840

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                   
Query: 232   gtccttcacctgctgggttgtaaatgggaacttgttgttcacaatggagttgag 285
             ||||||||||||||| || || || |||||| || ||||||| |||||||||||
Sbjct: 77686 gtccttcacctgctgcgtggtgaaggggaacctgctgttcaccatggagttgag 77633
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>dbj|AK100192.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023036E12, full
            insert sequence
          Length = 2368

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                  
Query: 232  gtccttcacctgctgggttgtaaatgggaacttgttgttcacaatggagttgag 285
            ||||||||||||||| || || || |||||| || ||||||| |||||||||||
Sbjct: 1937 gtccttcacctgctgcgtggtgaaggggaacctgctgttcaccatggagttgag 1884
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>gb|AC010242.7| Homo sapiens chromosome 5 clone CTC-359E10, complete sequence
          Length = 174293

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 480   caatgaatccatgcttctttgga 502
             |||||||||||||||||||||||
Sbjct: 29046 caatgaatccatgcttctttgga 29024
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>gb|AC008816.8| Homo sapiens chromosome 5 clone CTD-2122K17, complete sequence
          Length = 174293

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 480   caatgaatccatgcttctttgga 502
             |||||||||||||||||||||||
Sbjct: 29046 caatgaatccatgcttctttgga 29024
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>gb|AC010280.7| Homo sapiens chromosome 5 clone CTC-537E7, complete sequence
          Length = 133790

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 480   caatgaatccatgcttctttgga 502
             |||||||||||||||||||||||
Sbjct: 43669 caatgaatccatgcttctttgga 43691
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>gb|AC017093.3|AC017093 Homo sapiens BAC clone RP11-511G7 from 5, complete sequence
          Length = 203043

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 480   caatgaatccatgcttctttgga 502
             |||||||||||||||||||||||
Sbjct: 91407 caatgaatccatgcttctttgga 91385
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>gb|AE014846.1| Plasmodium falciparum 3D7 chromosome 12, section 3 of 9 of the complete
              sequence
          Length = 253132

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 38     acatgataaataacaaaaaatac 60
              |||||||||||||||||||||||
Sbjct: 233856 acatgataaataacaaaaaatac 233834
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>gb|AY126436.1| Drosophila nigrodunni yellow (yellow) gene, partial cds
          Length = 6731

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 46   aataacaaaaaatacgataaat 67
            ||||||||||||||||||||||
Sbjct: 2967 aataacaaaaaatacgataaat 2988
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>gb|AC010157.12| Homo sapiens chromosome 10 clone RP11-202D18, complete sequence
          Length = 160310

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 156   gggattcatttgccttcttgaa 177
             ||||||||||||||||||||||
Sbjct: 91263 gggattcatttgccttcttgaa 91242
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>gb|AC118627.6| Mus musculus chromosome 15, clone RP24-91E8, complete sequence
          Length = 256158

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 506    gcagggacttcatgggaaggt 526
              |||||||||||||||||||||
Sbjct: 115193 gcagggacttcatgggaaggt 115173
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>gb|AY582740.1| Chlamydomonas reinhardtii Fe-hydrogenase assembly protein (HydG)
           mRNA, complete cds
          Length = 1704

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 522 aaggtgtacttggggtgctcg 542
           |||||||||||||||||||||
Sbjct: 695 aaggtgtacttggggtgctcg 675
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>ref|XM_451567.1| Kluyveromyces lactis NRRL Y-1140, KLLA0B00825g predicted mRNA
          Length = 1185

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 250 tgtaaatgggaacttgttgtt 270
           |||||||||||||||||||||
Sbjct: 360 tgtaaatgggaacttgttgtt 380
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>ref|XM_672091.1| Plasmodium berghei strain ANKA queuine tRNA-ribosyltransferase;
           (PB000517.01.0) partial mRNA
          Length = 1572

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 45  aaataacaaaaaatacgataaatatatca 73
           |||||| |||||||||||||| |||||||
Sbjct: 449 aaataaaaaaaaatacgataattatatca 477
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>gb|AC129886.3| Atelerix albiventris clone LB4-234A16, complete sequence
          Length = 176448

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 327   cagttctagtgtttgagagtgcatc 351
             ||||||||| |||||||||||||||
Sbjct: 18472 cagttctagagtttgagagtgcatc 18448



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 327   cagttctagtgtttgagagtgcatc 351
             ||||||||| |||||||||||||||
Sbjct: 17254 cagttctagagtttgagagtgcatc 17278
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>emb|CR382122.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome B of strain NRRL
             Y-1140 of Kluyveromyces lactis
          Length = 1320834

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 250   tgtaaatgggaacttgttgtt 270
             |||||||||||||||||||||
Sbjct: 64643 tgtaaatgggaacttgttgtt 64663
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>gb|AC159301.2| Mus musculus BAC clone RP23-213B1 from chromosome 13, complete sequence
          Length = 188633

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 350    tcatgcatatttcctagcttc 370
              |||||||||||||||||||||
Sbjct: 108420 tcatgcatatttcctagcttc 108440
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>gb|DP000003.1| Atelerix albiventris target 1 genomic scaffold
          Length = 2136267

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 327    cagttctagtgtttgagagtgcatc 351
              ||||||||| |||||||||||||||
Sbjct: 627744 cagttctagagtttgagagtgcatc 627720



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 327    cagttctagtgtttgagagtgcatc 351
              ||||||||| |||||||||||||||
Sbjct: 626526 cagttctagagtttgagagtgcatc 626550
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>gb|CP000082.1| Psychrobacter arcticus 273-4, complete genome
          Length = 2650701

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 71    tcaagccacaagatagcatc 90
             ||||||||||||||||||||
Sbjct: 42370 tcaagccacaagatagcatc 42351
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>gb|AC102545.9| Mus musculus chromosome 9, clone RP23-118J13, complete sequence
          Length = 241789

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 124    gccaagaaacacccatgact 143
              ||||||||||||||||||||
Sbjct: 212259 gccaagaaacacccatgact 212278
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>gb|AC007245.3| Homo sapiens BAC clone RP11-273L18 from 7, complete sequence
          Length = 133137

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 110    taggaagaaatttagccaag 129
              ||||||||||||||||||||
Sbjct: 108434 taggaagaaatttagccaag 108453
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>emb|CT025841.2| Medicago truncatula chromosome 5 clone mth2-131j21, COMPLETE SEQUENCE
          Length = 122251

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 247   ggttgtaaatgggaacttgt 266
             ||||||||||||||||||||
Sbjct: 48940 ggttgtaaatgggaacttgt 48921
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>gb|AC010099.10| Homo sapiens BAC clone RP11-420H19 from 7, complete sequence
          Length = 154836

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 116    gaaatttagccaagaaacac 135
              ||||||||||||||||||||
Sbjct: 123891 gaaatttagccaagaaacac 123872
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>emb|AL161517.2|ATCHRIV29 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 29
          Length = 199861

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 114    aagaaatttagccaagaaac 133
              ||||||||||||||||||||
Sbjct: 139883 aagaaatttagccaagaaac 139902
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>emb|AL049524.1|ATF7L13 Arabidopsis thaliana DNA chromosome 4, BAC clone  F7L13 (ESSA project)
          Length = 95076

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 114   aagaaatttagccaagaaac 133
             ||||||||||||||||||||
Sbjct: 79920 aagaaatttagccaagaaac 79939
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>gb|AY113188.1| Mastigamoeba balamuthi aldehyde-alcohol dehydrogenase E (aadhE1)
            gene, partial cds
          Length = 3207

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 288  atgcagctgccccctcgcgt 307
            ||||||||||||||||||||
Sbjct: 1719 atgcagctgccccctcgcgt 1738
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>emb|BX470154.5| Zebrafish DNA sequence from clone CH211-81N22, complete sequence
          Length = 158249

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 381    tcatactgcatgcagcacca 400
              ||||||||||||||||||||
Sbjct: 114572 tcatactgcatgcagcacca 114553
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>gb|AC093597.3| Homo sapiens BAC clone RP11-187O17 from 4, complete sequence
          Length = 17211

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 507   cagggacttcatgggaaggt 526
             ||||||||||||||||||||
Sbjct: 10827 cagggacttcatgggaaggt 10846
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 212     gtcgcggccacgacgatgca 231
               ||||||||||||||||||||
Sbjct: 5059884 gtcgcggccacgacgatgca 5059903
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 52       aaaaaatacgataaatatat 71
                ||||||||||||||||||||
Sbjct: 23056795 aaaaaatacgataaatatat 23056814
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>dbj|AP004571.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0652A05
          Length = 150455

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 52     aaaaaatacgataaatatat 71
              ||||||||||||||||||||
Sbjct: 123339 aaaaaatacgataaatatat 123358
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>dbj|AP004236.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0417D05
          Length = 165752

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 52   aaaaaatacgataaatatat 71
            ||||||||||||||||||||
Sbjct: 7443 aaaaaatacgataaatatat 7462
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>dbj|AB019225.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K1O13
          Length = 25275

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 47   ataacaaaaaatacgataaatata 70
            |||| |||||||||||||||||||
Sbjct: 3360 ataaaaaaaaatacgataaatata 3337
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>dbj|AK120657.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013158E04, full
            insert sequence
          Length = 1507

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 52   aaaaaatacgataaatatat 71
            ||||||||||||||||||||
Sbjct: 1409 aaaaaatacgataaatatat 1428
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>gb|AF118222.1|F3H7 Arabidopsis thaliana BAC F3H7
          Length = 102216

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 114   aagaaatttagccaagaaac 133
             ||||||||||||||||||||
Sbjct: 66743 aagaaatttagccaagaaac 66724
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>gb|AF142686.1| Cyclolobium nutans maturase-like protein (matK) gene, complete cds;
           chloroplast gene for chloroplast product
          Length = 2503

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 477 atccaatgaatccatgcttctttg 500
           ||||||||||||| ||||||||||
Sbjct: 678 atccaatgaatccctgcttctttg 701
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>gb|AC006120.1|AC006120 Homo sapiens chromosome 17, clone hRPK.346_K_10, complete sequence
          Length = 168753

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 110   taggaagaaatttagccaag 129
             ||||||||||||||||||||
Sbjct: 66335 taggaagaaatttagccaag 66354
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>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome
          Length = 4096345

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 479     ccaatgaatccatgcttctt 498
               ||||||||||||||||||||
Sbjct: 2827485 ccaatgaatccatgcttctt 2827466
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>dbj|AP006365.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT31H17, TM0171,
             complete sequence
          Length = 126380

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 34    atatacatgataaataacaaaaaa 57
             |||||||| |||||||||||||||
Sbjct: 53913 atatacataataaataacaaaaaa 53890
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>gb|AC155302.2| Mus musculus BAC clone RP24-227A11 from chromosome 13, complete
             sequence
          Length = 152447

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 175   gaagaccccagcttgggcag 194
             ||||||||||||||||||||
Sbjct: 61081 gaagaccccagcttgggcag 61062
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>gb|AC140392.3| Mus musculus BAC clone RP24-89F9 from chromosome 9, complete sequence
          Length = 225973

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 124   gccaagaaacacccatgact 143
             ||||||||||||||||||||
Sbjct: 26173 gccaagaaacacccatgact 26192


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,316,306
Number of Sequences: 3902068
Number of extensions: 5316306
Number of successful extensions: 100229
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 99984
Number of HSP's gapped (non-prelim): 245
length of query: 550
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 527
effective length of database: 17,143,297,704
effective search space: 9034517890008
effective search space used: 9034517890008
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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