ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags4e07 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_470471.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2862 Score = 91.7 bits (46), Expect = 1e-16 Identities = 46/46 (100%) Strand = Plus / Minus Query: 5 cagagcaagctcatcatattcatccttgccaacaatgtacaggcag 50 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2460 cagagcaagctcatcatattcatccttgccaacaatgtacaggcag 2415
>dbj|AK120953.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023038P17, full insert sequence Length = 3386 Score = 91.7 bits (46), Expect = 1e-16 Identities = 46/46 (100%) Strand = Plus / Minus Query: 5 cagagcaagctcatcatattcatccttgccaacaatgtacaggcag 50 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 375 cagagcaagctcatcatattcatccttgccaacaatgtacaggcag 330
>dbj|AK058786.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-002-E01, full insert sequence Length = 706 Score = 91.7 bits (46), Expect = 1e-16 Identities = 46/46 (100%) Strand = Plus / Minus Query: 5 cagagcaagctcatcatattcatccttgccaacaatgtacaggcag 50 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 348 cagagcaagctcatcatattcatccttgccaacaatgtacaggcag 303
>gb|AC128647.8| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0062G19, complete sequence Length = 92392 Score = 87.7 bits (44), Expect = 2e-15 Identities = 44/44 (100%) Strand = Plus / Minus Query: 7 gagcaagctcatcatattcatccttgccaacaatgtacaggcag 50 |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61458 gagcaagctcatcatattcatccttgccaacaatgtacaggcag 61415
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 87.7 bits (44), Expect = 2e-15 Identities = 44/44 (100%) Strand = Plus / Minus Query: 7 gagcaagctcatcatattcatccttgccaacaatgtacaggcag 50 |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 35807519 gagcaagctcatcatattcatccttgccaacaatgtacaggcag 35807476
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 87.7 bits (44), Expect = 2e-15 Identities = 44/44 (100%) Strand = Plus / Minus Query: 7 gagcaagctcatcatattcatccttgccaacaatgtacaggcag 50 |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 35897649 gagcaagctcatcatattcatccttgccaacaatgtacaggcag 35897606
>gb|BT017656.1| Zea mays clone EL01N0440C07.c mRNA sequence Length = 811 Score = 77.8 bits (39), Expect = 2e-12 Identities = 42/43 (97%) Strand = Plus / Minus Query: 8 agcaagctcatcatattcatccttgccaacaatgtacaggcag 50 |||||||||||||||||||||||||||||||||||| |||||| Sbjct: 329 agcaagctcatcatattcatccttgccaacaatgtagaggcag 287
>gb|AY105605.1| Zea mays PCO095958 mRNA sequence Length = 744 Score = 77.8 bits (39), Expect = 2e-12 Identities = 42/43 (97%) Strand = Plus / Minus Query: 8 agcaagctcatcatattcatccttgccaacaatgtacaggcag 50 |||||||||||||||||||||||||||||||||||| |||||| Sbjct: 320 agcaagctcatcatattcatccttgccaacaatgtagaggcag 278
>gb|AC121783.2| Mus musculus BAC clone RP23-370I9 from 18, complete sequence Length = 184366 Score = 42.1 bits (21), Expect = 0.11 Identities = 21/21 (100%) Strand = Plus / Plus Query: 21 tattcatccttgccaacaatg 41 ||||||||||||||||||||| Sbjct: 44850 tattcatccttgccaacaatg 44870
>gb|AC154788.2| Mus musculus BAC clone RP24-470E2 from chromosome 13, complete sequence Length = 158761 Score = 40.1 bits (20), Expect = 0.42 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 gacagagcaagctcatcata 22 |||||||||||||||||||| Sbjct: 27592 gacagagcaagctcatcata 27573
>gb|BC076822.1| Xenopus laevis MGC83814 protein, mRNA (cDNA clone MGC:83814 IMAGE:6642465), complete cds Length = 2305 Score = 40.1 bits (20), Expect = 0.42 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 aagctcatcatattcatcct 30 |||||||||||||||||||| Sbjct: 332 aagctcatcatattcatcct 313
>emb|CT027863.2| Xenopus tropicalis finished cDNA, clone TEgg067k13 Length = 2266 Score = 40.1 bits (20), Expect = 0.42 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 aagctcatcatattcatcct 30 |||||||||||||||||||| Sbjct: 286 aagctcatcatattcatcct 267
>gb|AC165080.4| Mus musculus BAC clone RP24-93F20 from chromosome 9, complete sequence Length = 194427 Score = 38.2 bits (19), Expect = 1.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 31 tgccaacaatgtacaggca 49 ||||||||||||||||||| Sbjct: 84042 tgccaacaatgtacaggca 84060
>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome Length = 5237682 Score = 38.2 bits (19), Expect = 1.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 6 agagcaagctcatcatatt 24 ||||||||||||||||||| Sbjct: 4466507 agagcaagctcatcatatt 4466525
>gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete genome Length = 5227419 Score = 38.2 bits (19), Expect = 1.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 6 agagcaagctcatcatatt 24 ||||||||||||||||||| Sbjct: 4472571 agagcaagctcatcatatt 4472589
>gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome Length = 5228663 Score = 38.2 bits (19), Expect = 1.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 6 agagcaagctcatcatatt 24 ||||||||||||||||||| Sbjct: 4473133 agagcaagctcatcatatt 4473151
>emb|CR543861.1| Acinetobacter sp. ADP1 complete genome Length = 3598621 Score = 38.2 bits (19), Expect = 1.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 8 agcaagctcatcatattca 26 ||||||||||||||||||| Sbjct: 2950284 agcaagctcatcatattca 2950302
>gb|AC129510.15| Homo sapiens chromosome 17, clone RP11-1376P16, complete sequence Length = 83521 Score = 38.2 bits (19), Expect = 1.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 17 atcatattcatccttgcca 35 ||||||||||||||||||| Sbjct: 18186 atcatattcatccttgcca 18168
>gb|AC016623.6| Homo sapiens chromosome 5 clone CTD-2345N17, complete sequence Length = 153823 Score = 38.2 bits (19), Expect = 1.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 20 atattcatccttgccaaca 38 ||||||||||||||||||| Sbjct: 99348 atattcatccttgccaaca 99366
>gb|AC073536.5| Homo sapiens chromosome 5 clone CTD-2068E4, complete sequence Length = 116993 Score = 38.2 bits (19), Expect = 1.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 20 atattcatccttgccaaca 38 ||||||||||||||||||| Sbjct: 96404 atattcatccttgccaaca 96422
>gb|AE016879.1| Bacillus anthracis str. Ames, complete genome Length = 5227293 Score = 38.2 bits (19), Expect = 1.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 6 agagcaagctcatcatatt 24 ||||||||||||||||||| Sbjct: 4472444 agagcaagctcatcatatt 4472462
>dbj|AP005203.3| Homo sapiens genomic DNA, chromosome 18 clone:RP11-163J13, complete sequence Length = 163623 Score = 38.2 bits (19), Expect = 1.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 25 catccttgccaacaatgtacagg 47 ||||| ||||||||||||||||| Sbjct: 100239 catccctgccaacaatgtacagg 100217
>ref|NM_129211.1| Arabidopsis thaliana unknown protein AT2G36550 mRNA, complete cds Length = 666 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 15 tcatcatattcatccttg 32 |||||||||||||||||| Sbjct: 74 tcatcatattcatccttg 57
>gb|U39471.3| Caenorhabditis elegans cosmid T16D1, complete sequence Length = 11792 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 6 agagcaagctcatcatat 23 |||||||||||||||||| Sbjct: 4980 agagcaagctcatcatat 4997 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 6 agagcaagctcatcatat 23 |||||||||||||||||| Sbjct: 4845 agagcaagctcatcatat 4862 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 6 agagcaagctcatcatat 23 |||||||||||||||||| Sbjct: 4710 agagcaagctcatcatat 4727 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 6 agagcaagctcatcatat 23 |||||||||||||||||| Sbjct: 4577 agagcaagctcatcatat 4594 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 6 agagcaagctcatcatat 23 |||||||||||||||||| Sbjct: 4444 agagcaagctcatcatat 4461 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 6 agagcaagctcatcatat 23 |||||||||||||||||| Sbjct: 4309 agagcaagctcatcatat 4326 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 6 agagcaagctcatcatat 23 |||||||||||||||||| Sbjct: 4176 agagcaagctcatcatat 4193 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 6 agagcaagctcatcatat 23 |||||||||||||||||| Sbjct: 4041 agagcaagctcatcatat 4058
>gb|BC079763.1| Xenopus laevis cDNA clone MGC:86214 IMAGE:6957574, complete cds Length = 5150 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 4 acagagcaagctcatcat 21 |||||||||||||||||| Sbjct: 3973 acagagcaagctcatcat 3990
>gb|BC072246.1| Xenopus laevis cDNA clone MGC:82333 IMAGE:4173243, complete cds Length = 5145 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 4 acagagcaagctcatcat 21 |||||||||||||||||| Sbjct: 4096 acagagcaagctcatcat 4113
>gb|AC134596.3| Mus musculus BAC clone RP23-435C1 from chromosome 12, complete sequence Length = 193068 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 25 catccttgccaacaatgt 42 |||||||||||||||||| Sbjct: 133939 catccttgccaacaatgt 133922
>ref|XM_455722.1| Kluyveromyces lactis NRRL Y-1140, KLLA0F14300g predicted mRNA Length = 2010 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 8 agcaagctcatcatattc 25 |||||||||||||||||| Sbjct: 1514 agcaagctcatcatattc 1531
>gb|AY219126.1| Arabidopsis thaliana hypothetical protein (At2g36550/F1O11.18) mRNA, complete cds Length = 880 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 15 tcatcatattcatccttg 32 |||||||||||||||||| Sbjct: 142 tcatcatattcatccttg 125
>gb|AC124538.4| Mus musculus BAC clone RP23-338P10 from chromosome 1, complete sequence Length = 181512 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 3 gacagagcaagctcatca 20 |||||||||||||||||| Sbjct: 174622 gacagagcaagctcatca 174639
>gb|AC121980.2| Mus musculus BAC clone RP24-290F15 from 1, complete sequence Length = 129142 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 3 gacagagcaagctcatca 20 |||||||||||||||||| Sbjct: 7448 gacagagcaagctcatca 7465
>gb|AC137065.26| Medicago truncatula clone mth2-29h7, complete sequence Length = 105004 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 10 caagctcatcatattcat 27 |||||||||||||||||| Sbjct: 65312 caagctcatcatattcat 65329
>ref|XM_962212.1| PREDICTED: Tribolium castaneum similar to Actin-5C, transcript variant 1 (LOC661746), mRNA Length = 1131 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 14 ctcatcatattcatcctt 31 |||||||||||||||||| Sbjct: 1095 ctcatcatattcatcctt 1078
>ref|XM_970991.1| PREDICTED: Tribolium castaneum similar to Actin-5C, transcript variant 2 (LOC661746), mRNA Length = 1026 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 14 ctcatcatattcatcctt 31 |||||||||||||||||| Sbjct: 990 ctcatcatattcatcctt 973
>emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome F of strain NRRL Y-1140 of Kluyveromyces lactis Length = 2602197 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 8 agcaagctcatcatattc 25 |||||||||||||||||| Sbjct: 1326358 agcaagctcatcatattc 1326341
>emb|AL162755.2|NMA4Z2491 Neisseria meningitidis serogroup A strain Z2491 complete genome; segment 4/7 Length = 331801 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 25 catccttgccaacaatgt 42 |||||||||||||||||| Sbjct: 264577 catccttgccaacaatgt 264560
>emb|AL161514.2|ATCHRIV26 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 26 Length = 199754 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 15 tcatcatattcatccttg 32 |||||||||||||||||| Sbjct: 55235 tcatcatattcatccttg 55218
>gb|AC025568.25| Homo sapiens 12 BAC RP11-540D4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 151154 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 21 tattcatccttgccaaca 38 |||||||||||||||||| Sbjct: 84435 tattcatccttgccaaca 84452
>gb|AC006919.6| Arabidopsis thaliana chromosome 2 clone F1O11 map g6825, complete sequence Length = 104364 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 15 tcatcatattcatccttg 32 |||||||||||||||||| Sbjct: 76668 tcatcatattcatccttg 76651
>gb|AC015729.10| Homo sapiens, clone RP11-1A20, complete sequence Length = 153392 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 4 acagagcaagctcatcat 21 |||||||||||||||||| Sbjct: 45178 acagagcaagctcatcat 45195
>gb|AC108066.3| Homo sapiens BAC clone RP11-521H5 from 2, complete sequence Length = 158599 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 21 tattcatccttgccaaca 38 |||||||||||||||||| Sbjct: 71167 tattcatccttgccaaca 71150
>emb|AL512360.2|CNS07EF9 Human chromosome 14 DNA sequence BAC R-737F10 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 192972 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 4 acagagcaagctcatcat 21 |||||||||||||||||| Sbjct: 52862 acagagcaagctcatcat 52845
>gb|AF072897.1|AF072897 Arabidopsis thaliana BAC T8A17 chromosome IV, complete sequence Length = 83078 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 15 tcatcatattcatccttg 32 |||||||||||||||||| Sbjct: 35153 tcatcatattcatccttg 35170 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 591,642 Number of Sequences: 3902068 Number of extensions: 591642 Number of successful extensions: 166771 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 43 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 166463 Number of HSP's gapped (non-prelim): 308 length of query: 50 length of database: 17,233,045,268 effective HSP length: 20 effective length of query: 30 effective length of database: 17,155,003,908 effective search space: 514650117240 effective search space used: 514650117240 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)
