>RCOR1_XENLA (Q90WN5) REST corepressor 1 (Protein CoREST) (xCoREST)|
          Length = 431

 Score = 34.7 bits (78), Expect = 0.28
 Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 3/114 (2%)
 Frame = -1

Query: 628 VENNNSTHATDLRTEDASIPESRLPATPTIPAIK--KNPS-AANRAKRKFVPSADSNVNR 458
           +E  N  +  D+  E     +  +P   T+P IK  K+PS A NRAKRK         N 
Sbjct: 210 IEETNGANPVDIEIEQPKEAKKEVPKNDTVPHIKKEKHPSQAKNRAKRK-------PPNG 262

Query: 457 RVLKTPDVSAKTSSDSAEPRRSNRRIQPTSRLLEGLQSSLIASKITGEKVPRTN 296
             L   DV A +++ +A            + +L  L   L++ K   + + +TN
Sbjct: 263 MFLSQEDVEAVSANANA-----------ATTVLRQLDMELVSIKRQIQNIKQTN 305

>PROS_DROVI (Q9U6A1) Protein prospero|
          Length = 1556

 Score = 33.1 bits (74), Expect = 0.82
 Identities = 23/106 (21%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
 Frame = -1

Query: 637 NITVENNNSTHATDLRT-EDASIPESRLPATPTIPA-IKKNPSAANRAKRKFVPSADSNV 464
           N T  NNN+  +  +   ED+ +PE ++ + P + A   + P + +        S   N 
Sbjct: 301 NTTTNNNNNVVSESINLIEDSEMPEIKIKSEPELMASATQAPHSPHGGSSNSSSSHSHNS 360

Query: 463 NRRVLKTPDVSAKTSSDSAEPRRSNRRIQPTSRLLEGLQSSLIASK 326
           +   + +     + SSDS +  +   R  P + +   LQ+ ++ +K
Sbjct: 361 SNNSIASNGSLRRKSSDSLDSMQREERATPATTVEPQLQNEVLPTK 406

>TF2LX_HYLLA (Q8MIE6) Homeobox protein TGIF2LX (TGFB-induced factor 2-like|
           protein, X-linked) (TGF(beta)induced transcription
           factor 2-like protein) (TGIF-like on the X)
          Length = 241

 Score = 33.1 bits (74), Expect = 0.82
 Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
 Frame = -1

Query: 646 NPVNITVENNNSTHATDLRTEDASIPESRLPATP-TIPAIKKNPSAANRAKRKFVPSADS 470
           N  NI  E     HAT L++ DAS+P    P+ P  + ++   P    +   + +P  +S
Sbjct: 118 NDPNIGHETGKDAHATHLQSTDASVPAKSGPSGPENVQSLPVWPLPKGQMSGEKLPDPES 177

Query: 469 --NVNRRVLKTPDVSAK---TSSDSAEP 401
             + N  V+  P    K   TS  S EP
Sbjct: 178 APSQNPTVIAQPKKKVKVSVTSPSSPEP 205

>RCOR1_MOUSE (Q8CFE3) REST corepressor 1 (Protein CoREST)|
          Length = 477

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = -1

Query: 628 VENNNSTHATDLRTEDASIPESRLPATPTIPAIKK---NPSAANRAKRK 491
           +E  N ++  D+  +     +  +P T T+P +KK   +  A NRAKRK
Sbjct: 255 LEETNGSNPVDIEIDPNKESKKEVPPTETVPQVKKEKHSTQAKNRAKRK 303

>RCOR1_HUMAN (Q9UKL0) REST corepressor 1 (Protein CoREST)|
          Length = 482

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 25/109 (22%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
 Frame = -1

Query: 628 VENNNSTHATDLRTEDASIPESRLPATPTIPAIKK---NPSAANRAKRKFVPSADSNVNR 458
           +E  N  +  D+  +     +  +P T T+P +KK   +  A NRAKRK  P     +++
Sbjct: 261 LEEANGNNPIDIEVDQNKESKKEVPPTETVPQVKKEKHSTQAKNRAKRK--PPKGMFLSQ 318

Query: 457 RVLKTPDVSAKTSSDSAEPRRSNRRIQPTSRLLEGLQ--SSLIASKITG 317
             ++   VSA  ++ +   R+ +  +    R ++ ++  +S +  K+ G
Sbjct: 319 EDVEA--VSANATAATTVLRQLDMELVSVKRQIQNIKQTNSALKEKLDG 365

>SPEN_DROME (Q8SX83) Protein split ends|
          Length = 5560

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = -1

Query: 622  NNNSTHATDLRTEDASIPESRLPATPTIPAIKKNPSAANRAKRKFVPSADSNV 464
            NN++ H T+  TE   +P    PA P IP + + P     AKR   P     V
Sbjct: 4253 NNSNDHDTEDETETRQLP----PAKPPIPTVGRPPGRGGSAKRGRQPRGAKKV 4301

>PHF2_RHIME (Q52965) PhaF2 protein|
          Length = 123

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 15/27 (55%), Positives = 15/27 (55%)
 Frame = -1

Query: 571 PESRLPATPTIPAIKKNPSAANRAKRK 491
           PE R P T  IP  K  PS A R KRK
Sbjct: 94  PERRTPGTTEIPQAKPRPSQAGRRKRK 120

>NUM1_YEAST (Q00402) Nuclear migration protein NUM1|
          Length = 2748

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 20/74 (27%), Positives = 41/74 (55%)
 Frame = -1

Query: 628  VENNNSTHATDLRTEDASIPESRLPATPTIPAIKKNPSAANRAKRKFVPSADSNVNRRVL 449
            VE  N+   TD+ ++ +++ +    AT  IPA +   ++A +   K VP   SN+N + +
Sbjct: 2149 VELQNNEDYTDIISKSSTVKD----ATIFIPAYENIKNSAEKLGYKLVPFEKSNINLKNI 2204

Query: 448  KTPDVSAKTSSDSA 407
            + P + +K + D++
Sbjct: 2205 EAP-LFSKDNDDTS 2217

>VL96_IRV1 (P22856) L96 protein|
          Length = 867

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 23/76 (30%), Positives = 37/76 (48%)
 Frame = -1

Query: 592 RTEDASIPESRLPATPTIPAIKKNPSAANRAKRKFVPSADSNVNRRVLKTPDVSAKTSSD 413
           R+  AS+  SR P+ P      K+PSA  R+K    PS  + +     +TP  S +  S 
Sbjct: 431 RSPPASVRRSRTPSVP------KSPSARPRSKS---PSVRAEITDDEGETPPSSVRPKSP 481

Query: 412 SAEPRRSNRRIQPTSR 365
           S  P+  +  ++P S+
Sbjct: 482 SVRPKSPS--VRPRSK 495

>RRP1_DROME (P27864) Recombination repair protein 1 (DNA-(apurinic or|
           apyrimidinic site) lyase) (EC 4.2.99.18)
          Length = 679

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 7/83 (8%)
 Frame = -1

Query: 628 VENNNSTHATDLRTEDASIPESRLPATPTIPAI-------KKNPSAANRAKRKFVPSADS 470
           V+ N  + A +L+      P +R      + A        +K P+A  R K+K     D 
Sbjct: 30  VDENADSAAEELKVPAKGKPRARKATKTAVSAENSEEVEPQKAPTAVARGKKKQPKDTDE 89

Query: 469 NVNRRVLKTPDVSAKTSSDSAEP 401
           N    V+  P   AK ++  AEP
Sbjct: 90  NGQMEVVAKPKGRAKKATAEAEP 112

>JHD1B_XENLA (Q640I9) JmjC domain-containing histone demethylation protein 1B|
           (EC 1.14.11.-) (F-box/LRR-repeat protein 10) (F-box and
           leucine-rich repeat protein 10)
          Length = 1259

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 9/75 (12%)
 Frame = -1

Query: 574 IPESRLPATPTIPAIKKNPSAAN-RAKRKFVPSADSNVNRR--------VLKTPDVSAKT 422
           IPE +    PT   IKK P   + R KRKF    D +V +R        +L+    S KT
Sbjct: 741 IPEEQPKKKPTEGIIKKKPEDGHVRKKRKFEKPPDPSVRKRLKLVKEEKLLRKKRRSWKT 800

Query: 421 SSDSAEPRRSNRRIQ 377
             + A   ++ RRI+
Sbjct: 801 PDERAMMAKTLRRIK 815

>PKHG1_HUMAN (Q9ULL1) Pleckstrin homology domain-containing family G member 1|
          Length = 1385

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
 Frame = -1

Query: 526 KNPSAANRAKRKFVPSADSNVNRRVLKTPDVS---AKTSSDSAEPRRSNRRIQPTSRLLE 356
           K  SA  R +RK  PS+ S+   +VLKT + +    K S +   P+ S+ R  P  R  +
Sbjct: 457 KEGSAPYRLRRKSEPSSRSH---KVLKTSETAQDIQKVSREEGSPQLSSARPSPAQRNSQ 513

Query: 355 GLQSSLIA 332
              S++I+
Sbjct: 514 PSSSTMIS 521

>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1|
          Length = 917

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 21/73 (28%), Positives = 36/73 (49%)
 Frame = -1

Query: 571 PESRLPATPTIPAIKKNPSAANRAKRKFVPSADSNVNRRVLKTPDVSAKTSSDSAEPRRS 392
           P  R P T + P +++  S++   +R+  PS  +   RRV +TP+   K    +A P   
Sbjct: 700 PRPRAPQTSSPPPVRRGASSS--PQRRQSPSPSTRPIRRVSRTPE--PKKIKKAASPSPQ 755

Query: 391 NRRIQPTSRLLEG 353
           + R   +SR + G
Sbjct: 756 SVRRVSSSRSVSG 768

>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1|
           (Plenty-of-prolines 101)
          Length = 946

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 12/89 (13%)
 Frame = -1

Query: 571 PESRLPATPTIPAIKKNPSAANRAKRKFVPSADSNVNRRVLKTPDVSA--KTSSDSA--- 407
           P  R P T + P +++  SA+ + ++   PS  +   RRV +TP+     K +S S    
Sbjct: 705 PRPRAPQTSSPPPVRRGASASPQGRQS--PSPSTRPIRRVSRTPEPKKIKKAASPSTRPI 762

Query: 406 -------EPRRSNRRIQPTSRLLEGLQSS 341
                  EP++  +   P+ + +  + SS
Sbjct: 763 RRVSRTPEPKKIKKAASPSPQSVRRVSSS 791

>MTG8R_HUMAN (O43439) Protein CBFA2T2 (MTG8-like protein) (MTG8-related protein|
           1) (Myeloid translocation-related protein 1) (ETO
           homologous on chromosome 20) (p85)
          Length = 604

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 26/91 (28%), Positives = 40/91 (43%)
 Frame = -1

Query: 571 PESRLPATPTIPAIKKNPSAANRAKRKFVPSADSNVNRRVLKTPDVSAKTSSDSAEPRRS 392
           PE R+PA P  P   K  S ++      +P  +    R V  TP  +A ++  +  P   
Sbjct: 23  PEKRVPAMPGSPVEVKIQSRSSPPTMPPLPPINPGGPRPVSFTP--TALSNGINHSPPTL 80

Query: 391 NRRIQPTSRLLEGLQSSLIASKITGEKVPRT 299
           N    P  R   G  SS  +S +T +++P T
Sbjct: 81  NGAPSPPQRFSNGPASS-TSSALTNQQLPAT 110

>NACAM_MOUSE (P70670) Nascent polypeptide-associated complex alpha subunit,|
            muscle-specific form (Alpha-NAC, muscle-specific form)
          Length = 2187

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 20/84 (23%), Positives = 36/84 (42%)
 Frame = -1

Query: 589  TEDASIPESRLPATPTIPAIKKNPSAANRAKRKFVPSADSNVNRRVLKTPDVSAKTSSDS 410
            T++ ++     P TP +P +K   S    +K   +  A + +      +P  S K  S  
Sbjct: 1535 TQEVAVSSRETPVTPAVPPVKNPSSHKKTSKTIELKEAPATLP----PSPTKSPKIPSSK 1590

Query: 409  AEPRRSNRRIQPTSRLLEGLQSSL 338
              PR S  +  P S  ++ + +SL
Sbjct: 1591 KAPRTSAPKEFPASPSIKPVTTSL 1614

>CS016_HUMAN (Q8ND99) Protein C19orf16|
          Length = 567

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 32/115 (27%), Positives = 45/115 (39%), Gaps = 7/115 (6%)
 Frame = -1

Query: 571 PESRLPATPT-------IPAIKKNPSAANRAKRKFVPSADSNVNRRVLKTPDVSAKTSSD 413
           P  + PA P        IPA  +  SAA+ + RK      S V     KTP  S K  S 
Sbjct: 111 PSQKAPAVPAPSQKAPAIPAPSRKASAASASPRK-----ASAVPAPPQKTPPPSQKAPSV 165

Query: 412 SAEPRRSNRRIQPTSRLLEGLQSSLIASKITGEKVPRTNFRSATSASRGKAHG*F 248
              P+++   + PT+   + L     + K       +     +  ASRGK  G F
Sbjct: 166 PTIPQKA---VSPTAPKKKSLLLPAPSQKALPTSPTQYQMALSPPASRGKLPGDF 217

>NFRKB_XENTR (Q6P4L9) Nuclear factor related to kappa-B-binding protein|
           (DNA-binding protein R kappa-B)
          Length = 1265

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 2/108 (1%)
 Frame = -1

Query: 589 TEDASIPESRLPATPTIPAIKKNPSAANRAKRKFVPSADSNVNRRVLKTPDVSAKTSSDS 410
           TE +  P    P TPT PA+   P +         PS  + VN+ V          +S  
Sbjct: 709 TESSMPPTPGTPGTPTPPALPSTPMS---------PSTSATVNKIV----------ASTI 749

Query: 409 AEPRRSNRRIQPTSRLLEGLQSSLIASKITGE--KVPRTNFRSATSAS 272
            E ++S++ +   S       S+L++  +T +   V  T+ R+AT +S
Sbjct: 750 TETQKSSQSVLLVSSPAMPQLSTLLSPAVTSQSTSVTPTSGRAATISS 797

>LAMA4_HUMAN (Q16363) Laminin alpha-4 chain precursor|
          Length = 1823

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 30/129 (23%), Positives = 51/129 (39%), Gaps = 12/129 (9%)
 Frame = -1

Query: 640  VNITVENNNSTHATDLRTEDASIPESRLPAT--PTIPAIKKNPSAANRAKRKF-VPSADS 470
            + + ++N+N  +  +L T+D  IP    P +  P   +I K        K    VPS  S
Sbjct: 895  MGLAIKNDNLVYVYNLGTKDVEIPLDSKPVSSWPAYFSIVKIERVGKHGKVFLTVPSLSS 954

Query: 469  NVNRRVLKTPDVSAKTSSDSAEPR---------RSNRRIQPTSRLLEGLQSSLIASKITG 317
                + +K  + S   S    +P           SN ++ PTS  L G    L  + +  
Sbjct: 955  TAEEKFIKKGEFSGDDSLLDLDPEDTVFYVGGVPSNFKL-PTSLNLPGFVGCLELATLNN 1013

Query: 316  EKVPRTNFR 290
            + +   NF+
Sbjct: 1014 DVISLYNFK 1022


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,943,415
Number of Sequences: 219361
Number of extensions: 1864482
Number of successful extensions: 4321
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 4166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4315
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6882837918
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)