ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags4e03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PEL8_ARATH (Q9M8Z8) Probable pectate lyase 8 precursor (EC 4.2.2.2) 35 0.27
2PEL5_ARATH (Q9FXD8) Probable pectate lyase 5 precursor (EC 4.2.2.2) 32 1.7
3HAT2_GIBZE (Q4I7L0) Histone acetyltransferase type B subunit 2 (... 31 3.0
4MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, trac... 31 3.9
5CXX_CONTE (Q5I4E6) Conotoxin Gla-TxX precursor 31 3.9
6PEL14_ARATH (Q9SVQ6) Putative pectate lyase 14 precursor (EC 4.2... 31 3.9
7OR2T5_HUMAN (Q6IEZ7) Olfactory receptor 2T5 (Olfactory receptor ... 31 3.9
8O2T29_HUMAN (Q8NH02) Olfactory receptor 2T29 31 3.9
9PEL15_ARATH (Q944R1) Probable pectate lyase 15 precursor (EC 4.2... 30 5.1
10AROB_GEOSL (Q74BL6) 3-dehydroquinate synthase (EC 4.2.3.4) 30 8.7
11Y335B_MYCGE (Q9ZB73) Hypothetical protein MG335.2 30 8.7
12GLYA_METKA (Q8TZ19) Serine hydroxymethyltransferase (EC 2.1.2.1)... 30 8.7

>PEL8_ARATH (Q9M8Z8) Probable pectate lyase 8 precursor (EC 4.2.2.2)|
          Length = 416

 Score = 34.7 bits (78), Expect = 0.27
 Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 8/127 (6%)
 Frame = -2

Query: 662 FSGDLQVVIIQDFKWCSFL------LKLHRLYGGTHLTVNGVSSIRVQSIEVAEVVPNGD 501
           F  D+ + + Q+    SF       + +H +  G  LT+  V++I V  I V +  P G+
Sbjct: 139 FKRDMVITLKQELIMNSFKTIDGRGVNVH-IANGACLTIQYVTNIIVHGIHVHDCKPTGN 197

Query: 500 VFVQSDGEHFGF--SPDQILGSACRSRFLQLDRCAVSSCWISTMDRRRMILRRPASVHLV 327
             V+S   H+GF    D    S   S  + +D  ++S+C    +D    ++   A     
Sbjct: 198 AMVRSSPSHYGFRSMADGDAISIFGSSHIWIDHNSLSNCADGLVD---AVMSSTAITVSN 254

Query: 326 DFFCHRS 306
           +FF H +
Sbjct: 255 NFFTHHN 261



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>PEL5_ARATH (Q9FXD8) Probable pectate lyase 5 precursor (EC 4.2.2.2)|
          Length = 408

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
 Frame = -2

Query: 584 GGTHLTVNGVSSIRVQSIEVAEVVPNGDVFVQSDGEHFGF--SPDQILGSACRSRFLQLD 411
           GG  +TV  V++I +  + + +    G+ +V+    H+G+  + D    S      + +D
Sbjct: 162 GGACITVQYVTNIIIHGVNIHDCKRKGNAYVRDSPSHYGWRTASDGDAVSIFGGSHVWVD 221

Query: 410 RCAVSSC 390
            C++S+C
Sbjct: 222 HCSLSNC 228



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>HAT2_GIBZE (Q4I7L0) Histone acetyltransferase type B subunit 2 (EC 2.3.1.48)|
          Length = 423

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = -2

Query: 602 KLHRLYGGTHLTVNGVSSIRVQSIEVAEVV-PNGDVFVQSDGEHFGF 465
           K+HRL  GTH +    + +++  +++ +VV PN D + +  GE  G+
Sbjct: 57  KIHRLLLGTHTSDESPNYLQIADVQIPKVVAPNPDDYDEERGEIGGY 103



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>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)|
            (High molecular weight salivary mucin MG1) (Sublingual
            gland mucin)
          Length = 5703

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 22/87 (25%), Positives = 37/87 (42%)
 Frame = +1

Query: 16   ATLLHAVLCMADEETTAKFTLVPARPLCCDSTTACL*TSTTQLLQPHTGVHAEKLHGGWL 195
            AT L  +   A + T   FT +P+  L          T T+Q   PH       +H    
Sbjct: 3020 ATTLPVLTSTATKSTATSFTPIPSSTLGT--------TGTSQNRPPHPMATMSTIHPSST 3071

Query: 196  PHSSNLFHLLTTCQKTSEWSNPIAVPS 276
            P +++   +LTT   T+  ++ ++ PS
Sbjct: 3072 PETTHTSTVLTTKATTTRATSSMSTPS 3098



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>CXX_CONTE (Q5I4E6) Conotoxin Gla-TxX precursor|
          Length = 82

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = +1

Query: 13  AATLLHAVLCMADEETTAKFTLVPARPLCCDSTTACL*TSTTQLLQPHTGVHAEKLHG 186
           A  ++  V+C  D E +++F   P     C + T C      Q ++P   + A+K +G
Sbjct: 16  ALGMVATVICSCDSEFSSEFCERPEESCSCSTHTCCHWARRDQCMKPQRCISAQKGNG 73



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>PEL14_ARATH (Q9SVQ6) Putative pectate lyase 14 precursor (EC 4.2.2.2)|
          Length = 418

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 8/99 (8%)
 Frame = -2

Query: 662 FSGDLQVVIIQDFKWCSFL------LKLHRLYGGTHLTVNGVSSIRVQSIEVAEVVPNGD 501
           F  D+ + + Q+    SF       + +H + GG  LTV  V++I +  I + +    G+
Sbjct: 141 FKRDMVITLSQELIMNSFKTIDGRGVNVH-IAGGACLTVQYVTNIIIHGINIHDCKRTGN 199

Query: 500 VFVQSDGEHFGF--SPDQILGSACRSRFLQLDRCAVSSC 390
             V+S   H+G+    D    S   S  + +D  ++SSC
Sbjct: 200 AMVRSSESHYGWRTMADGDGISIFGSSHIWIDHNSLSSC 238



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>OR2T5_HUMAN (Q6IEZ7) Olfactory receptor 2T5 (Olfactory receptor OR1-62)|
          Length = 315

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = -3

Query: 646 RLLLYKISSGAVFFLSYIGCMEAHT*R*MVCHQ*EFNQLKWQRWCLTATSLCNLMGSTSG 467
           ++ LY   +G+ FFL      + +     +CH   +  L   R CL   S C  +GS  G
Sbjct: 104 QMFLYLTLAGSEFFLLATMAYDRYV---AICHPLRYPVLMNHRVCLFLASGCWFLGSVDG 160

Query: 466 FLPT 455
           F+ T
Sbjct: 161 FMLT 164



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>O2T29_HUMAN (Q8NH02) Olfactory receptor 2T29|
          Length = 315

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = -3

Query: 646 RLLLYKISSGAVFFLSYIGCMEAHT*R*MVCHQ*EFNQLKWQRWCLTATSLCNLMGSTSG 467
           ++ LY   +G+ FFL      + +     +CH   +  L   R CL   S C  +GS  G
Sbjct: 104 QMFLYLTLAGSEFFLLATMAYDRYV---AICHPLRYPVLMNHRVCLFLASGCWFLGSVDG 160

Query: 466 FLPT 455
           F+ T
Sbjct: 161 FMLT 164



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>PEL15_ARATH (Q944R1) Probable pectate lyase 15 precursor (EC 4.2.2.2) (Pectate|
           lyase A11)
          Length = 470

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 19/88 (21%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
 Frame = -2

Query: 647 QVVIIQDFKWCSFLLKLHRLYGGTHLTVNGVSSIRVQSIEVAEVVPNGDVFVQSDGEHFG 468
           Q +I+  FK          +  G  +T+  ++++ +  + + +  P G+  V+S   HFG
Sbjct: 203 QELIMNSFKTIDARGSNVHIANGACITIQFITNVIIHGLHIHDCKPTGNAMVRSSPSHFG 262

Query: 467 F--SPDQILGSACRSRFLQLDRCAVSSC 390
           +    D    S   S  + +D  ++S C
Sbjct: 263 WRTMADGDAVSIFGSSHIWIDHNSLSHC 290



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>AROB_GEOSL (Q74BL6) 3-dehydroquinate synthase (EC 4.2.3.4)|
          Length = 362

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 5/101 (4%)
 Frame = -2

Query: 527 VAEVVPNGDVFVQSDGEHFGFSPDQI---LGSACRSRFLQLDRCAVSSCWISTMDRRRMI 357
           +AEV+  G V    DG+ F F    +   LG   ++    + RC     W+   D R   
Sbjct: 185 LAEVIKYGVVL---DGKFFAFLEQNVSALLGRDRQTLVRAITRCCALKAWVVEQDERETG 241

Query: 356 LRRPASVHLVDFFCHRSRRLPFHT--LA*EGTAIGLLHSLV 240
           LR  A ++    F H    L  +T  L  E  AIG++ + V
Sbjct: 242 LR--AVLNYGHTFGHAVEALTGYTAVLHGEAVAIGMVRAAV 280



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>Y335B_MYCGE (Q9ZB73) Hypothetical protein MG335.2|
          Length = 341

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 395 KKRHSGLAEEIYCGRQNRESGREKTR 472
           KK H+ LA E+YC +QN   G+ + +
Sbjct: 54  KKEHNNLAIEVYCDKQNEGIGKVRDK 79



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>GLYA_METKA (Q8TZ19) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine|
           methylase) (SHMT)
          Length = 428

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -1

Query: 426 ISSARPLCRFFLLDFDDGQKTHDPSPTR 343
           + SA  LC   LL +DD  K+HDPS  R
Sbjct: 332 LESANILCNKNLLPWDDESKSHDPSGIR 359


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,268,138
Number of Sequences: 219361
Number of extensions: 2179719
Number of successful extensions: 5440
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5439
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6541540170
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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