>DEGP2_ARATH (O82261) Protease Do-like 2, chloroplast precursor (EC 3.4.21.-)|
          Length = 607

 Score =  111 bits (278), Expect = 1e-24
 Identities = 52/93 (55%), Positives = 69/93 (74%)
 Frame = -3

Query: 602 IKNIHHLAHLVDTCQDKFLTFEFEDDFLVVLDREEAVAASSDIQKEHAIPSVRSMDLSEP 423
           I+NIHHLAHL+D C+DK+L FEFED+++ VL+RE + +AS  I K++ IPS RS DL EP
Sbjct: 515 IRNIHHLAHLIDMCKDKYLVFEFEDNYVAVLEREASNSASLCILKDYGIPSERSADLLEP 574

Query: 422 YVDTNHEVQNQGEDFGDSPVTNFELGVDCLLWA 324
           YVD   + Q   +  GDSPV+N E+G D L+WA
Sbjct: 575 YVDPIDDTQALDQGIGDSPVSNLEIGFDGLVWA 607

>DEGP9_ARATH (Q9FL12) Protease Do-like 9 (EC 3.4.21.-)|
          Length = 592

 Score = 50.4 bits (119), Expect = 4e-06
 Identities = 24/57 (42%), Positives = 36/57 (63%)
 Frame = -3

Query: 602 IKNIHHLAHLVDTCQDKFLTFEFEDDFLVVLDREEAVAASSDIQKEHAIPSVRSMDL 432
           +KN+  LA +V+ C+D+++ F  + D +VVLD + A  A+ DI   H IPS  S DL
Sbjct: 530 VKNLKGLAGMVENCEDEYMKFNLDYDQIVVLDTKTAKEATLDILTTHCIPSAMSDDL 586

>DGP11_ARATH (Q9LK71) Putative protease Do-like 11, mitochondrial precursor (EC|
           3.4.21.-)
          Length = 565

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 22/60 (36%), Positives = 35/60 (58%)
 Frame = -3

Query: 602 IKNIHHLAHLVDTCQDKFLTFEFEDDFLVVLDREEAVAASSDIQKEHAIPSVRSMDLSEP 423
           +KN+ HL  L++ C  + L  EF++  ++VL+ E A  A+  I + H I SV S D+  P
Sbjct: 479 VKNLKHLCELIEECSTEDLRLEFKNHKVLVLNYESAKKATLQILERHKIKSVISKDICLP 538

>DEGP4_ARATH (Q9SHZ0) Putative protease Do-like 4, mitochondrial precursor (EC|
           3.4.21.-)
          Length = 518

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 21/56 (37%), Positives = 33/56 (58%)
 Frame = -3

Query: 602 IKNIHHLAHLVDTCQDKFLTFEFEDDFLVVLDREEAVAASSDIQKEHAIPSVRSMD 435
           ++N+ HL  LV+TC  + L  + E++ +VVL+   A  A+S I + H IPS    D
Sbjct: 458 VENLKHLTELVETCWTEDLRLDLENEKVVVLNYANAKEATSLILELHRIPSANEYD 513

>DGP13_ARATH (Q9FM41) Putative protease Do-like 13 (EC 3.4.21.-)|
          Length = 486

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 19/57 (33%), Positives = 33/57 (57%)
 Frame = -3

Query: 602 IKNIHHLAHLVDTCQDKFLTFEFEDDFLVVLDREEAVAASSDIQKEHAIPSVRSMDL 432
           ++N+ HL  L++ C  K L  E  D  +++LD + A +++S I + H +P   S DL
Sbjct: 416 VENLKHLCELIEKCCTKDLRLELGDGRVIILDYQFAKSSTSLILERHRVPWAMSKDL 472

>DGP12_ARATH (Q9LK70) Putative protease Do-like 12, mitochondrial precursor (EC|
           3.4.21.-)
          Length = 499

 Score = 39.7 bits (91), Expect = 0.007
 Identities = 19/51 (37%), Positives = 31/51 (60%)
 Frame = -3

Query: 602 IKNIHHLAHLVDTCQDKFLTFEFEDDFLVVLDREEAVAASSDIQKEHAIPS 450
           +KN+ HL  L++ C  K L  + E+D ++VL+ E A  A+ +I + H I S
Sbjct: 444 VKNLKHLRELIEGCFSKDLRLDLENDKVMVLNYESAKKATFEILERHNIKS 494

>DPOLQ_HUMAN (O75417) DNA polymerase theta (EC 2.7.7.7) (DNA polymerase eta)|
          Length = 1762

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -3

Query: 473 QKEHAIPSVRSMDLSEPYVDTNHEVQNQGED 381
           +K H + S R+++LS+P +D +H+    G D
Sbjct: 752 EKNHTVVSPRALELSDPVLDEHHQGDQDGGD 782

>ROD1_YEAST (Q02805) Protein ROD1|
          Length = 837

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +2

Query: 482 TMQLLLLPGPTQRGSRLRIRMSRTCLDRCPLDEQGGGCSLS 604
           T  LL LPG ++  + L+   SRT L   PL     G S+S
Sbjct: 685 TSSLLPLPGSSKSSNNLKRSSSRTHLSHSPLPRNNSGSSVS 725

>CHD6_HUMAN (Q8TD26) Chromodomain-helicase-DNA-binding protein 6 (EC 3.6.1.-)|
            (ATP-dependent helicase CHD6) (CHD-6) (Radiation-induced
            gene B protein)
          Length = 2715

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 19/46 (41%), Positives = 23/46 (50%)
 Frame = -3

Query: 503  EEAVAASSDIQKEHAIPSVRSMDLSEPYVDTNHEVQNQGEDFGDSP 366
            E A AASS  Q E +IPS   +D      D + EV   G +F D P
Sbjct: 2340 EPATAASS--QAEKSIPSKSLLDWLRQQADYSLEVPGFGANFSDKP 2383


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,928,956
Number of Sequences: 219361
Number of extensions: 1988928
Number of successful extensions: 4966
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4962
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5310515667
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)