ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags3o22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT024077.1| Zea mays clone EL01N0513D07 mRNA sequence 125 2e-25
2dbj|AK071919.1| Oryza sativa (japonica cultivar-group) cDNA clon... 115 2e-22
3dbj|AK065630.1| Oryza sativa (japonica cultivar-group) cDNA clon... 115 2e-22
4dbj|AK059221.1| Oryza sativa (japonica cultivar-group) cDNA clon... 115 2e-22
5gb|AC148814.1| Oryza sativa (japonica cultivar-group) chromosome... 111 3e-21
6dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 111 3e-21
7emb|AL356072.21| Human DNA sequence from clone RP11-141M15 on ch... 44 0.53
8emb|AL132962.1|ATF2A19 Arabidopsis thaliana DNA chromosome 3, BA... 44 0.53
9dbj|AP004433.1| Parazen pacificus mitochondrial DNA, complete ge... 44 0.53
10gb|BC073708.1| Xenopus laevis MGC83646 protein, mRNA (cDNA clone... 42 2.1
11gb|AC148876.2| Pan troglodytes BAC clone CH251-50I16 from Y, com... 42 2.1
12gb|AE002149.1| Ureaplasma parvum serovar 3 str. ATCC 700970 sect... 42 2.1
13gb|AC146453.3| Pan troglodytes BAC clone CH251-510F17 from Y, co... 42 2.1
14gb|AC147675.2| Pan troglodytes BAC clone CH251-6P20 from Y, comp... 42 2.1
15gb|U39848.1| Caenorhabditis elegans cosmid B0286, complete sequence 42 2.1
16dbj|BS000655.1| Pan troglodytes chromosome Y clone:PTB-215M20, c... 42 2.1
17dbj|BS000615.1| Pan troglodytes chromosome Y clone:PTBY-009P07, ... 42 2.1
18dbj|BS000669.1| Pan troglodytes chromosome Y clone:PTB-529M03, c... 42 2.1
19dbj|BS000609.1| Pan troglodytes chromosome Y clone:PTB-217K15, c... 42 2.1
20gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 42 2.1
21gb|AC095063.2| Homo sapiens BAC clone RP11-533K12 from 4, comple... 42 2.1
22emb|Z82082.1|CEZC334 Caenorhabditis elegans Cosmid ZC334, comple... 42 2.1
23gb|AC130830.3| Mus musculus BAC clone RP23-474G1 from chromosome... 40 8.2
24gb|AC115798.14| Mus musculus chromosome 8, clone RP23-406D18, co... 40 8.2
25gb|AC122299.5| Mus musculus BAC clone RP23-270L23 from chromosom... 40 8.2
26gb|AC128661.3| Mus musculus BAC clone RP24-567N23 from chromosom... 40 8.2
27gb|AC112158.4| Mus musculus BAC clone RP24-116K14 from chromosom... 40 8.2
28gb|AC123042.2| Mus musculus BAC clone RP24-545O17 from 10, compl... 40 8.2
29emb|AL021937.1|HS149A16 Human DNA sequence from clone RP1-149A16... 40 8.2
30emb|AL645964.8| Mouse DNA sequence from clone RP23-335G10 on chr... 40 8.2
31gb|AC158562.8| Mus musculus chromosome 8, clone RP24-275J2, comp... 40 8.2
32gb|AC145335.15| Pan troglodytes clone rp43-26k12, complete sequence 40 8.2
33gb|AC106882.5| Homo sapiens BAC clone RP11-768B22 from 4, comple... 40 8.2
34dbj|AK024235.1| Homo sapiens cDNA FLJ14173 fis, clone NT2RP2002755 40 8.2
35gb|AC026774.7| Homo sapiens chromosome 5 clone CTC-235G5, comple... 40 8.2
36dbj|AP004237.1| Proteus vulgaris plasmid Rts1 DNA, complete sequ... 40 8.2
37gb|AC113815.6| Rattus norvegicus BAC CH230-221C20 (Children's H... 40 8.2
38gb|AC159214.2| Pan troglodytes BAC clone CH251-522M3 from chromo... 40 8.2
39gb|AC090066.2| Homo sapiens chromosome 5 clone CTC-277N16, compl... 40 8.2
40emb|BX322616.8| Zebrafish DNA sequence from clone DKEY-21K24 in ... 40 8.2
41gb|AC017047.4|AC017047 Homo sapiens BAC clone RP11-323F10 from X... 40 8.2
42emb|BX649392.6| Zebrafish DNA sequence from clone DKEY-84J12 in ... 40 8.2
43gb|AC155307.2| Mus musculus BAC clone RP24-147F17 from 15, compl... 40 8.2
44emb|CR381605.5| Zebrafish DNA sequence from clone CH211-156J19 i... 40 8.2
45gb|AC006539.1|AC006539 Homo sapiens chromosome 19, BAC 39498 (CI... 40 8.2
46emb|AL929267.14| Zebrafish DNA sequence from clone CH211-2M15 in... 40 8.2
47gb|AC147138.3| Mus musculus BAC clone RP24-230H23 from 7, comple... 40 8.2
48gb|AC146616.3| Mus musculus BAC clone RP23-9A18 from 7, complete... 40 8.2
49gb|AC130829.4| Mus musculus BAC clone RP23-451I11 from 12, compl... 40 8.2 
>gb|BT024077.1| Zea mays clone EL01N0513D07 mRNA sequence
          Length = 2174

 Score =  125 bits (63), Expect = 2e-25
 Identities = 96/107 (89%)
 Strand = Plus / Minus

                                                                        
Query: 496  gcttcttcccggtccaacacaacgaggaagtcgtcttcgaattcgaatgtcaagaacttg 555
            |||||||| || | ||| ||||| ||||||||||||||||||||||| |||| |||||||
Sbjct: 1614 gcttcttctcgatgcaaaacaacaaggaagtcgtcttcgaattcgaacgtcaggaacttg 1555

                                                           
Query: 556  tcttgacaggtgtccactagatgagcaaggtggtggatgttctttat 602
            |||| |||||||||||| |||||||||||||| ||||| ||||||||
Sbjct: 1554 tctttacaggtgtccacaagatgagcaaggtgatggatattctttat 1508
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>dbj|AK071919.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013072E14, full
            insert sequence
          Length = 2157

 Score =  115 bits (58), Expect = 2e-22
 Identities = 138/162 (85%), Gaps = 2/162 (1%)
 Strand = Plus / Minus

                                                                        
Query: 441  tgaccttacagaggggatggcatgctctttttggatatctgacgatgcagctact-gctt 499
            ||||||||||||||| || ||||| || ||| |||||||||| ||||| | || | ||||
Sbjct: 1712 tgaccttacagagggaattgcatgttcctttaggatatctgatgatgcgg-tagtcgctt 1654

                                                                        
Query: 500  cttcccggtccaacacaacgaggaagtcgtcttcgaattcgaatgtcaagaacttgtctt 559
            ||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1653 cttcccgatccaaaacaactaggaagtcgtcttcgaattcgaacgtcaagaacttgtctt 1594

                                                      
Query: 560  gacaggtgtccactagatgagcaaggtggtggatgttcttta 601
              ||| |||| || || || ||||| ||||| || |||||||
Sbjct: 1593 tgcagttgtcaacaaggtgggcaagatggtgaatattcttta 1552
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>dbj|AK065630.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013029I18, full
            insert sequence
          Length = 2231

 Score =  115 bits (58), Expect = 2e-22
 Identities = 138/162 (85%), Gaps = 2/162 (1%)
 Strand = Plus / Minus

                                                                        
Query: 441  tgaccttacagaggggatggcatgctctttttggatatctgacgatgcagctact-gctt 499
            ||||||||||||||| || ||||| || ||| |||||||||| ||||| | || | ||||
Sbjct: 1786 tgaccttacagagggaattgcatgttcctttaggatatctgatgatgcgg-tagtcgctt 1728

                                                                        
Query: 500  cttcccggtccaacacaacgaggaagtcgtcttcgaattcgaatgtcaagaacttgtctt 559
            ||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1727 cttcccgatccaaaacaactaggaagtcgtcttcgaattcgaacgtcaagaacttgtctt 1668

                                                      
Query: 560  gacaggtgtccactagatgagcaaggtggtggatgttcttta 601
              ||| |||| || || || ||||| ||||| || |||||||
Sbjct: 1667 tgcagttgtcaacaaggtgggcaagatggtgaatattcttta 1626
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>dbj|AK059221.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-D03, full
            insert sequence
          Length = 1704

 Score =  115 bits (58), Expect = 2e-22
 Identities = 138/162 (85%), Gaps = 2/162 (1%)
 Strand = Plus / Minus

                                                                        
Query: 441  tgaccttacagaggggatggcatgctctttttggatatctgacgatgcagctact-gctt 499
            ||||||||||||||| || ||||| || ||| |||||||||| ||||| | || | ||||
Sbjct: 1190 tgaccttacagagggaattgcatgttcctttaggatatctgatgatgcgg-tagtcgctt 1132

                                                                        
Query: 500  cttcccggtccaacacaacgaggaagtcgtcttcgaattcgaatgtcaagaacttgtctt 559
            ||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1131 cttcccgatccaaaacaactaggaagtcgtcttcgaattcgaacgtcaagaacttgtctt 1072

                                                      
Query: 560  gacaggtgtccactagatgagcaaggtggtggatgttcttta 601
              ||| |||| || || || ||||| ||||| || |||||||
Sbjct: 1071 tgcagttgtcaacaaggtgggcaagatggtgaatattcttta 1030
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>gb|AC148814.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0077J22,
              complete sequence
          Length = 173903

 Score =  111 bits (56), Expect = 3e-21
 Identities = 106/120 (88%), Gaps = 2/120 (1%)
 Strand = Plus / Minus

                                                                          
Query: 441    tgaccttacagaggggatggcatgctctttttggatatctgacgatgcagctact-gctt 499
              ||||||||||||||| || ||||| || ||| |||||||||| ||||| | || | ||||
Sbjct: 119336 tgaccttacagagggaattgcatgttcctttaggatatctgatgatgcgg-tagtcgctt 119278

                                                                          
Query: 500    cttcccggtccaacacaacgaggaagtcgtcttcgaattcgaatgtcaagaacttgtctt 559
              ||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 119277 cttcccgatccaaaacaactaggaagtcgtcttcgaattcgaacgtcaagaacttgtctt 119218
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score =  111 bits (56), Expect = 3e-21
 Identities = 106/120 (88%), Gaps = 2/120 (1%)
 Strand = Plus / Minus

                                                                           
Query: 441     tgaccttacagaggggatggcatgctctttttggatatctgacgatgcagctact-gctt 499
               ||||||||||||||| || ||||| || ||| |||||||||| ||||| | || | ||||
Sbjct: 2672816 tgaccttacagagggaattgcatgttcctttaggatatctgatgatgcgg-tagtcgctt 2672758

                                                                           
Query: 500     cttcccggtccaacacaacgaggaagtcgtcttcgaattcgaatgtcaagaacttgtctt 559
               ||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 2672757 cttcccgatccaaaacaactaggaagtcgtcttcgaattcgaacgtcaagaacttgtctt 2672698
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>emb|AL356072.21| Human DNA sequence from clone RP11-141M15 on chromosome 1 Contains the
              DNB5 gene for deleted in neuroblastoma 5 and the 3' end of
              the RERE gene for arginine-glutamic acid dipeptide (RE)
              repeats (KIAA0458), complete sequence
          Length = 122331

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 5      ttattgcacttatgagaattta 26
              ||||||||||||||||||||||
Sbjct: 107510 ttattgcacttatgagaattta 107531
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>emb|AL132962.1|ATF2A19 Arabidopsis thaliana DNA chromosome 3, BAC clone F2A19
          Length = 95993

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 385   tcgccttggttttggacctcatggtt 410
             |||||| |||||||||||||||||||
Sbjct: 74297 tcgcctaggttttggacctcatggtt 74272
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>dbj|AP004433.1| Parazen pacificus mitochondrial DNA, complete genome
          Length = 16848

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 149   taaaaattacacctaaactaaccttc 174
             |||||||||| |||||||||||||||
Sbjct: 13457 taaaaattacccctaaactaaccttc 13482
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>gb|BC073708.1| Xenopus laevis MGC83646 protein, mRNA (cDNA clone MGC:83646
           IMAGE:5085171), complete cds
          Length = 3173

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 491 ctactgcttcttcccggtccaacac 515
           |||||||||||||| ||||||||||
Sbjct: 524 ctactgcttcttccaggtccaacac 500
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>gb|AC148876.2| Pan troglodytes BAC clone CH251-50I16 from Y, complete sequence
          Length = 182194

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 490  gctactgcttcttcccggtcc 510
            |||||||||||||||||||||
Sbjct: 6413 gctactgcttcttcccggtcc 6393
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>gb|AE002149.1| Ureaplasma parvum serovar 3 str. ATCC 700970 section 50 of 59 of the
             complete genome
          Length = 14175

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 116   aaacattttgtgattttaaca 136
             |||||||||||||||||||||
Sbjct: 12019 aaacattttgtgattttaaca 12039
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>gb|AC146453.3| Pan troglodytes BAC clone CH251-510F17 from Y, complete sequence
          Length = 215114

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 490    gctactgcttcttcccggtcc 510
              |||||||||||||||||||||
Sbjct: 117618 gctactgcttcttcccggtcc 117638
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>gb|AC147675.2| Pan troglodytes BAC clone CH251-6P20 from Y, complete sequence
          Length = 166567

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 490    gctactgcttcttcccggtcc 510
              |||||||||||||||||||||
Sbjct: 101548 gctactgcttcttcccggtcc 101528
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>gb|U39848.1| Caenorhabditis elegans cosmid B0286, complete sequence
          Length = 39337

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 17   tgagaatttaaagaattgttt 37
            |||||||||||||||||||||
Sbjct: 5109 tgagaatttaaagaattgttt 5089
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>dbj|BS000655.1| Pan troglodytes chromosome Y clone:PTB-215M20, complete sequences
          Length = 152092

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 490   gctactgcttcttcccggtcc 510
             |||||||||||||||||||||
Sbjct: 18521 gctactgcttcttcccggtcc 18501
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>dbj|BS000615.1| Pan troglodytes chromosome Y clone:PTBY-009P07, complete sequences
          Length = 105898

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 490   gctactgcttcttcccggtcc 510
             |||||||||||||||||||||
Sbjct: 22896 gctactgcttcttcccggtcc 22876
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>dbj|BS000669.1| Pan troglodytes chromosome Y clone:PTB-529M03, complete sequences
          Length = 163369

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 490    gctactgcttcttcccggtcc 510
              |||||||||||||||||||||
Sbjct: 154529 gctactgcttcttcccggtcc 154509
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>dbj|BS000609.1| Pan troglodytes chromosome Y clone:PTB-217K15, complete sequences
          Length = 146625

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 490   gctactgcttcttcccggtcc 510
             |||||||||||||||||||||
Sbjct: 85874 gctactgcttcttcccggtcc 85894
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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 490      gctactgcttcttcccggtcc 510
                |||||||||||||||||||||
Sbjct: 21912476 gctactgcttcttcccggtcc 21912456



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 490      gctactgcttcttcccggtcc 510
                |||||||||||||||||||||
Sbjct: 21676276 gctactgcttcttcccggtcc 21676296
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>gb|AC095063.2| Homo sapiens BAC clone RP11-533K12 from 4, complete sequence
          Length = 153814

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 284   gtgttcttggtttctagaatg 304
             |||||||||||||||||||||
Sbjct: 18278 gtgttcttggtttctagaatg 18298
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>emb|Z82082.1|CEZC334 Caenorhabditis elegans Cosmid ZC334, complete sequence
          Length = 35836

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 179   attaagatacaacaaaatacaacat 203
             ||||| |||||||||||||||||||
Sbjct: 10167 attaaaatacaacaaaatacaacat 10191
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>gb|AC130830.3| Mus musculus BAC clone RP23-474G1 from chromosome 12, complete sequence
          Length = 199958

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 280   actggtgttcttggtttcta 299
             ||||||||||||||||||||
Sbjct: 13082 actggtgttcttggtttcta 13101
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>gb|AC115798.14| Mus musculus chromosome 8, clone RP23-406D18, complete sequence
          Length = 225828

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 11   cacttatgagaatttaaagaattg 34
            |||||||||||| |||||||||||
Sbjct: 3976 cacttatgagaaattaaagaattg 3999
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>gb|AC122299.5| Mus musculus BAC clone RP23-270L23 from chromosome 5, complete sequence
          Length = 209091

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 39    tcacctagttgtacaaaggg 58
             ||||||||||||||||||||
Sbjct: 34408 tcacctagttgtacaaaggg 34427
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>gb|AC128661.3| Mus musculus BAC clone RP24-567N23 from chromosome 7, complete sequence
          Length = 151249

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 108   gatgaatgaaacattttgtgattt 131
             |||||||||| |||||||||||||
Sbjct: 51275 gatgaatgaatcattttgtgattt 51298
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>gb|AC112158.4| Mus musculus BAC clone RP24-116K14 from chromosome 15, complete
             sequence
          Length = 175171

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 107   tgatgaatgaaacattttgt 126
             ||||||||||||||||||||
Sbjct: 73081 tgatgaatgaaacattttgt 73100
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>gb|AC123042.2| Mus musculus BAC clone RP24-545O17 from 10, complete sequence
          Length = 177899

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 480    tgacgatgcagctactgctt 499
              ||||||||||||||||||||
Sbjct: 118851 tgacgatgcagctactgctt 118832
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>emb|AL021937.1|HS149A16 Human DNA sequence from clone RP1-149A16 on chromosome 22 Contains four
              novel genes (LOC339666, HSPC117), the RFPL3 gene for ret
              finger protein-like 3, a immunoglobulin lambda chain
              pseudogene, the RFPL3S gene for ret finger protein-like 3
              antisense, the BPIL2 gene for
              bactericidal/permeability-increasing protein-like 2, the 5'
              end of the FBXO7 gene for F-box protein 7 and three CpG
              islands, complete sequence
          Length = 173354

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 285    tgttcttggtttctagaatg 304
              ||||||||||||||||||||
Sbjct: 157472 tgttcttggtttctagaatg 157491
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>emb|AL645964.8| Mouse DNA sequence from clone RP23-335G10 on chromosome 11 Contains the
              3' end of the Gabrb2 gene for subunit beta 2
              gamma-aminobutyric acid (GABA-A) receptor, complete
              sequence
          Length = 195923

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 178    cattaagatacaacaaaata 197
              ||||||||||||||||||||
Sbjct: 164575 cattaagatacaacaaaata 164594
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>gb|AC158562.8| Mus musculus chromosome 8, clone RP24-275J2, complete sequence
          Length = 181144

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 11    cacttatgagaatttaaagaattg 34
             |||||||||||| |||||||||||
Sbjct: 62159 cacttatgagaaattaaagaattg 62136
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>gb|AC145335.15| Pan troglodytes clone rp43-26k12, complete sequence
          Length = 208895

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 285    tgttcttggtttctagaatg 304
              ||||||||||||||||||||
Sbjct: 132750 tgttcttggtttctagaatg 132731
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>gb|AC106882.5| Homo sapiens BAC clone RP11-768B22 from 4, complete sequence
          Length = 176692

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 136    atacaacatactctaaaaattaca 159
              ||||||||||| ||||||||||||
Sbjct: 155759 atacaacatacactaaaaattaca 155782
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>dbj|AK024235.1| Homo sapiens cDNA FLJ14173 fis, clone NT2RP2002755
          Length = 2882

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 136  atacaacatactctaaaaattaca 159
            ||||||||||| ||||||||||||
Sbjct: 2074 atacaacatacactaaaaattaca 2051
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>gb|AC026774.7| Homo sapiens chromosome 5 clone CTC-235G5, complete sequence
          Length = 108451

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 142   catactctaaaaattacacc 161
             ||||||||||||||||||||
Sbjct: 66424 catactctaaaaattacacc 66443
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>dbj|AP004237.1| Proteus vulgaris plasmid Rts1 DNA, complete sequence
          Length = 217182

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 255   acccgcaggtgtaattacca 274
             ||||||||||||||||||||
Sbjct: 11119 acccgcaggtgtaattacca 11100
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>gb|AC113815.6| Rattus norvegicus  BAC CH230-221C20 (Children's Hospital Oakland Research
              Institute Rat (BN/SsNHsd/MCW) BAC library) complete
              sequence
          Length = 229621

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 185    atacaacaaaatacaacatg 204
              ||||||||||||||||||||
Sbjct: 122831 atacaacaaaatacaacatg 122850
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>gb|AC159214.2| Pan troglodytes BAC clone CH251-522M3 from chromosome unknown, complete
              sequence
          Length = 190101

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 285    tgttcttggtttctagaatg 304
              ||||||||||||||||||||
Sbjct: 168639 tgttcttggtttctagaatg 168620
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>gb|AC090066.2| Homo sapiens chromosome 5 clone CTC-277N16, complete sequence
          Length = 89420

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 142   catactctaaaaattacacc 161
             ||||||||||||||||||||
Sbjct: 66424 catactctaaaaattacacc 66443
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>emb|BX322616.8| Zebrafish DNA sequence from clone DKEY-21K24 in linkage group 25,
              complete sequence
          Length = 232304

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 106    ttgatgaatgaaacattttg 125
              ||||||||||||||||||||
Sbjct: 173049 ttgatgaatgaaacattttg 173030
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>gb|AC017047.4|AC017047 Homo sapiens BAC clone RP11-323F10 from X, complete sequence
          Length = 180322

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 547    aagaacttgtcttgacaggt 566
              ||||||||||||||||||||
Sbjct: 167592 aagaacttgtcttgacaggt 167573
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>emb|BX649392.6| Zebrafish DNA sequence from clone DKEY-84J12 in linkage group 5,
             complete sequence
          Length = 197352

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 119   cattttgtgattttaacata 138
             ||||||||||||||||||||
Sbjct: 75500 cattttgtgattttaacata 75481
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>gb|AC155307.2| Mus musculus BAC clone RP24-147F17 from 15, complete sequence
          Length = 190527

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 107    tgatgaatgaaacattttgt 126
              ||||||||||||||||||||
Sbjct: 156664 tgatgaatgaaacattttgt 156645
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>emb|CR381605.5| Zebrafish DNA sequence from clone CH211-156J19 in linkage group 21,
            complete sequence
          Length = 180526

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 106  ttgatgaatgaaacattttg 125
            ||||||||||||||||||||
Sbjct: 2658 ttgatgaatgaaacattttg 2677
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>gb|AC006539.1|AC006539 Homo sapiens chromosome 19, BAC 39498 (CIT-B-26L23), complete sequence
          Length = 114739

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 145   actctaaaaattacacctaa 164
             ||||||||||||||||||||
Sbjct: 42221 actctaaaaattacacctaa 42240
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>emb|AL929267.14| Zebrafish DNA sequence from clone CH211-2M15 in linkage group 14,
             complete sequence
          Length = 175892

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 120   attttgtgattttaacatac 139
             ||||||||||||||||||||
Sbjct: 85435 attttgtgattttaacatac 85416
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>gb|AC147138.3| Mus musculus BAC clone RP24-230H23 from 7, complete sequence
          Length = 189381

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 108    gatgaatgaaacattttgtgattt 131
              |||||||||| |||||||||||||
Sbjct: 144990 gatgaatgaatcattttgtgattt 145013
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>gb|AC146616.3| Mus musculus BAC clone RP23-9A18 from 7, complete sequence
          Length = 198813

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 108    gatgaatgaaacattttgtgattt 131
              |||||||||| |||||||||||||
Sbjct: 178598 gatgaatgaatcattttgtgattt 178575
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>gb|AC130829.4| Mus musculus BAC clone RP23-451I11 from 12, complete sequence
          Length = 189692

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 280    actggtgttcttggtttcta 299
              ||||||||||||||||||||
Sbjct: 138988 actggtgttcttggtttcta 139007


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,381,270
Number of Sequences: 3902068
Number of extensions: 5381270
Number of successful extensions: 99566
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 99404
Number of HSP's gapped (non-prelim): 162
length of query: 604
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 581
effective length of database: 17,143,297,704
effective search space: 9960255966024
effective search space used: 9960255966024
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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