ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags4d21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TMM15_HUMAN (Q9UPQ8) Transmembrane protein 15 28 5.0
2LMP1_EBVR (P13198) Latent membrane protein 1 (LMP-1) (Protein p63) 28 6.5
3LMP1_EBVC (P29362) Latent membrane protein 1 (LMP-1) (Protein p63) 28 6.5

>TMM15_HUMAN (Q9UPQ8) Transmembrane protein 15|
          Length = 538

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 9/63 (14%)
 Frame = +1

Query: 49  W*HRYTRVQANPLN-MTKFITKTS--------WNPLPSLACMINSETSIKQNADKSWNHG 201
           W HR  R   NPL  + +F+ +T         W+ L +LAC++    + K+++ +S  H 
Sbjct: 274 WLHRLIR--RNPLLWLLQFLFQTDTRIYLLAYWSLLATLACLVVLYQNAKRSSSESKKHQ 331

Query: 202 SPT 210
           +PT
Sbjct: 332 APT 334



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>LMP1_EBVR (P13198) Latent membrane protein 1 (LMP-1) (Protein p63)|
          Length = 386

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 214 AAWGSHGSKIYLHFVLWTFHCL 149
           A W  HG  +YL  VL+ F CL
Sbjct: 96  ALWNLHGQALYLGIVLFIFGCL 117



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>LMP1_EBVC (P29362) Latent membrane protein 1 (LMP-1) (Protein p63)|
          Length = 404

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 214 AAWGSHGSKIYLHFVLWTFHCL 149
           A W  HG  +YL  VL+ F CL
Sbjct: 96  ALWNLHGQALYLGIVLFIFGCL 117


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,200,446
Number of Sequences: 219361
Number of extensions: 582850
Number of successful extensions: 1305
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1305
length of database: 80,573,946
effective HSP length: 47
effective length of database: 70,263,979
effective search space used: 1686335496
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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