>PHR_THET8 (P61497) Deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) (DNA|
           photolyase) (Photoreactivating enzyme)
          Length = 420

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 15/29 (51%), Positives = 17/29 (58%)
 Frame = -1

Query: 500 RNIVPALPAVEAYYKGLKEREIPSDDPRL 414
           R   P LP  EA  KG +E EIP +DP L
Sbjct: 144 RGAAPPLPPPEALPKGPEEGEIPREDPGL 172

>DISC_DROME (P23792) Protein disconnected|
          Length = 568

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
 Frame = +1

Query: 223 RPKRVGYLVFWRLNILVHPATSPK--QFSTCIGSARDQSTLTVHY*VFLLGPNRSCRLSK 396
           +P+R G          ++PAT  K  Q S C  +  D+  L +H+    L     C +  
Sbjct: 67  KPRRWGSPPINLAGQFINPATGKKRVQCSICFKTFCDKGALKIHFSAVHLREMHKCTVEG 126

Query: 397 TRATFTSRGSSEGISRSFNP 456
               F+SR S    S + NP
Sbjct: 127 CNMVFSSRRSRNRHSANPNP 146

>TRMA_VIBVY (Q7MQ79) tRNA (uracil-5-)-methyltransferase (EC 2.1.1.35)|
           (tRNA(M-5-U54)-methyltransferase) (RUMT)
          Length = 369

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +2

Query: 449 SIPCSMLQQQEVLELYCGFEAYPRYNLQLYIHQSFHQKLLVEDPFPSWDS 598
           ++ C+   Q ++LELYCG       N  L + Q+F + L  E   PS +S
Sbjct: 203 AVDCTQESQGDLLELYCG-----NGNFSLALAQNFERVLATELAKPSVES 247

>TRMA_VIBVU (Q8DD43) tRNA (uracil-5-)-methyltransferase (EC 2.1.1.35)|
           (tRNA(M-5-U54)-methyltransferase) (RUMT)
          Length = 369

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +2

Query: 449 SIPCSMLQQQEVLELYCGFEAYPRYNLQLYIHQSFHQKLLVEDPFPSWDS 598
           ++ C+   Q ++LELYCG       N  L + Q+F + L  E   PS +S
Sbjct: 203 AVDCTQESQGDLLELYCG-----NGNFSLALAQNFERVLATELAKPSVES 247


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,916,919
Number of Sequences: 219361
Number of extensions: 2393834
Number of successful extensions: 6289
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6287
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6086476506
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)