>RL4_PRUAR (Q9XF97) 60S ribosomal protein L4 (L1)|
          Length = 408

 Score =  108 bits (270), Expect = 8e-24
 Identities = 54/79 (68%), Positives = 63/79 (79%)
 Frame = -3

Query: 490 RMLLPCSSSTPYFGTARRMAVLAEAARVKARKDKINSKRTKLSAEEASKIKAAGKAWYQT 311
           R+L       PY  TARRM++LAEA RVKA+K+K++ KR  +S EEAS IKAAGKAWYQT
Sbjct: 328 RILNTMLKLNPYAKTARRMSLLAEAERVKAKKEKLDKKRKPISKEEASTIKAAGKAWYQT 387

Query: 310 MISDSDYTEFDVFSKWLGV 254
           MISDSDYTEFD F+KWLGV
Sbjct: 388 MISDSDYTEFDNFTKWLGV 406

>RL4A_ARATH (P49691) 60S ribosomal protein L4-1 (L1)|
          Length = 407

 Score =  102 bits (254), Expect = 6e-22
 Identities = 48/68 (70%), Positives = 58/68 (85%)
 Frame = -3

Query: 460 PYFGTARRMAVLAEAARVKARKDKINSKRTKLSAEEASKIKAAGKAWYQTMISDSDYTEF 281
           PY  TA+RM++LAEA+RVKA+K+K+  KR  ++ EEA  IKAAGKAWYQTMISDSDYTEF
Sbjct: 337 PYAKTAKRMSLLAEASRVKAKKEKLEKKRKVVTKEEAQAIKAAGKAWYQTMISDSDYTEF 396

Query: 280 DVFSKWLG 257
           D F+KWLG
Sbjct: 397 DNFTKWLG 404

>RL4B_ARATH (Q9SF40) 60S ribosomal protein L4-2 (L1)|
          Length = 406

 Score = 97.8 bits (242), Expect = 1e-20
 Identities = 46/68 (67%), Positives = 57/68 (83%)
 Frame = -3

Query: 460 PYFGTARRMAVLAEAARVKARKDKINSKRTKLSAEEASKIKAAGKAWYQTMISDSDYTEF 281
           PY  TA+RM++LAEA RVKA+K+K+  KR  ++ EEA  IKAAGK+WY+TMISDSDYTEF
Sbjct: 336 PYAKTAKRMSLLAEAQRVKAKKEKLAKKRKTVTKEEALAIKAAGKSWYKTMISDSDYTEF 395

Query: 280 DVFSKWLG 257
           D F+KWLG
Sbjct: 396 DNFTKWLG 403

>CDC27_HUMAN (P30260) Cell division cycle protein 27 homolog (CDC27Hs) (H-NUC)|
          Length = 824

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +3

Query: 72  VSKKASTDKTLEITSYQNSIRCLRLHNTTQ*QNHTLGSQR 191
           + +K   D+T + TS QN   CL    TTQ  NH+L  ++
Sbjct: 158 IGEKPDPDQTFKFTSLQNFSNCLPNSCTTQVPNHSLSHRQ 197

>GPMA_STAES (Q8CN61) 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase|
           (EC 5.4.2.1) (Phosphoglyceromutase) (PGAM)
           (BPG-dependent PGAM) (dPGM)
          Length = 228

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +3

Query: 36  TSXRTIKYATEHVSKKASTDKTLEITSYQNSIRCL 140
           T  R + + T+H+S+    DKT+ ++++ NSIR L
Sbjct: 155 TLERVVPFWTDHISQHLLDDKTVLVSAHGNSIRAL 189

>GPMA_STAEQ (Q5HLI0) 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase|
           (EC 5.4.2.1) (Phosphoglyceromutase) (PGAM)
           (BPG-dependent PGAM) (dPGM)
          Length = 228

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +3

Query: 36  TSXRTIKYATEHVSKKASTDKTLEITSYQNSIRCL 140
           T  R + + T+H+S+    DKT+ ++++ NSIR L
Sbjct: 155 TLERVVPFWTDHISQHLLDDKTVLVSAHGNSIRAL 189

>SPAT2_HUMAN (Q9UM82) Spermatogenesis-associated protein 2|
           (Spermatogenesis-associated protein PD1)
          Length = 520

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 20/75 (26%), Positives = 34/75 (45%)
 Frame = -3

Query: 490 RMLLPCSSSTPYFGTARRMAVLAEAARVKARKDKINSKRTKLSAEEASKIKAAGKAWYQT 311
           R +L C   TP  GTA ++  L E  +VK    ++     K+  E+  +I         +
Sbjct: 132 RAILSCMGYTPELGTAYKLRELVETLQVKMVSFEL--FLAKVECEQMLEI--------HS 181

Query: 310 MISDSDYTEFDVFSK 266
            + D  Y+E D+ S+
Sbjct: 182 QVKDKGYSELDIVSE 196

>VAV_MOUSE (P27870) Proto-oncogene vav (p95vav)|
          Length = 845

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 15/81 (18%)
 Frame = -3

Query: 478 PCSSSTPYFGTARRMAVLAEAARVKARKDKINSKRTKLSAEEASKIKAAGK--------- 326
           P + ST YFGTA            KAR D     R++LS +E   IK   K         
Sbjct: 776 PPAGSTKYFGTA------------KARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRG 823

Query: 325 ------AWYQTMISDSDYTEF 281
                  W+ +   + DY+E+
Sbjct: 824 EIYGRIGWFPSNYVEEDYSEY 844

>VAV_HUMAN (P15498) Proto-oncogene vav|
          Length = 845

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 23/81 (28%), Positives = 30/81 (37%), Gaps = 15/81 (18%)
 Frame = -3

Query: 478 PCSSSTPYFGTARRMAVLAEAARVKARKDKINSKRTKLSAEEASKIKAAGK--------- 326
           P   ST YFGTA            KAR D     R++LS +E   IK   K         
Sbjct: 776 PAVGSTKYFGTA------------KARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRG 823

Query: 325 ------AWYQTMISDSDYTEF 281
                  W+     + DY+E+
Sbjct: 824 EIYGRVGWFPANYVEEDYSEY 844

>PLEC1_HUMAN (Q15149) Plectin-1 (PLTN) (PCN) (Hemidesmosomal protein 1) (HD1)|
          Length = 4684

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 7/48 (14%)
 Frame = -3

Query: 445  ARRMAVLAEAARVKARKDKINSK-------RTKLSAEEASKIKAAGKA 323
            ARR A  AE ARV+A ++   S+       R K SAEE ++ +A  +A
Sbjct: 2223 ARRAAEEAEEARVQAEREAAQSRRQVEEAERLKQSAEEQAQARAQAQA 2270


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,042,310
Number of Sequences: 219361
Number of extensions: 834489
Number of successful extensions: 2146
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2146
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3638905326
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)