>gb|AC073855.5| Homo sapiens BAC clone RP11-799A12 from 4, complete sequence
          Length = 193024

 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                        
Query: 573   ttcaggttattgaccttggtctgggca 599
             |||||||||||||||||||||||||||
Sbjct: 85379 ttcaggttattgaccttggtctgggca 85353

>gb|AC022743.7| Homo sapiens chromosome 18, clone RP11-789C7, complete sequence
          Length = 182466

 Score = 48.1 bits (24), Expect = 0.040
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 147   aatatacctaggtatattataaat 170
             ||||||||||||||||||||||||
Sbjct: 49812 aatatacctaggtatattataaat 49835

>gb|BC073179.1| Xenopus laevis retinoid X receptor beta, mRNA (cDNA clone
           IMAGE:5156765), partial cds
          Length = 3134

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 544 tattttctccacgggcatctcct 566
           |||||||||||||||||||||||
Sbjct: 688 tattttctccacgggcatctcct 666

>gb|BC099003.1| Xenopus laevis retinoid X receptor beta, mRNA (cDNA clone
           IMAGE:6325534), partial cds
          Length = 3140

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 544 tattttctccacgggcatctcct 566
           |||||||||||||||||||||||
Sbjct: 709 tattttctccacgggcatctcct 687

>emb|X87366.1|XLRNARXR X.laevis mRNA for retinoic acid receptor beta
          Length = 1626

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 544 tattttctccacgggcatctcct 566
           |||||||||||||||||||||||
Sbjct: 694 tattttctccacgggcatctcct 672

>gb|BC108460.1| Xenopus laevis cDNA clone IMAGE:7205585, partial cds
          Length = 2073

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 544 tattttctccacgggcatctcct 566
           |||||||||||||||||||||||
Sbjct: 708 tattttctccacgggcatctcct 686

>gb|BC054649.1| Danio rerio retinoid x receptor, beta, mRNA (cDNA clone MGC:66116
           IMAGE:5410111), complete cds
          Length = 2268

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 545 attttctccacgggcatctcct 566
           ||||||||||||||||||||||
Sbjct: 808 attttctccacgggcatctcct 787

>ref|NM_144663.1| Homo sapiens chromosome 11 open reading frame 40 (C11orf40), mRNA
          Length = 654

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 450 ccacaagtgactgggccattg 470
           |||||||||||||||||||||
Sbjct: 497 ccacaagtgactgggccattg 517

>gb|BC072132.1| Xenopus laevis xRXR beta, mRNA (cDNA clone MGC:79966
           IMAGE:4680024), complete cds
          Length = 4083

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 544 tattttctccacgggcatctc 564
           |||||||||||||||||||||
Sbjct: 895 tattttctccacgggcatctc 875

>dbj|AB228734.1| Aspergillus oryzae cDNA, contig sequence: AoEST5607
          Length = 730

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 513 atatccaggagtgtcatgtagtcat 537
           ||||||| |||||||||||||||||
Sbjct: 154 atatccacgagtgtcatgtagtcat 130

>dbj|AP007159.1| Aspergillus oryzae RIB40 genomic DNA, SC026
          Length = 2324132

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 513     atatccaggagtgtcatgtagtcat 537
               ||||||| |||||||||||||||||
Sbjct: 1777273 atatccacgagtgtcatgtagtcat 1777297

>gb|AC090719.8| Homo sapiens chromosome 11, clone RP11-648B16, complete sequence
          Length = 179177

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 450    ccacaagtgactgggccattg 470
              |||||||||||||||||||||
Sbjct: 137256 ccacaagtgactgggccattg 137276

>gb|AC010930.9| Homo sapiens chromosome 11, clone RP11-54I6, complete sequence
          Length = 148313

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 450    ccacaagtgactgggccattg 470
              |||||||||||||||||||||
Sbjct: 131944 ccacaagtgactgggccattg 131924

>gb|AF439154.1|AF439154 Homo sapiens NOV1 mRNA, complete cds
          Length = 654

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 450 ccacaagtgactgggccattg 470
           |||||||||||||||||||||
Sbjct: 497 ccacaagtgactgggccattg 517

>gb|S73269.1| RXR beta =xRXR beta [Xenopus laevis, mRNA, 2547 nt]
          Length = 2547

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 544 tattttctccacgggcatctc 564
           |||||||||||||||||||||
Sbjct: 897 tattttctccacgggcatctc 877

>gb|AC131065.16| Mus musculus chromosome 18, clone RP23-21J21, complete sequence
          Length = 208270

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 287    tcaccaccaaacatagtctt 306
              ||||||||||||||||||||
Sbjct: 207589 tcaccaccaaacatagtctt 207608

>gb|AC091787.6| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0087G11, complete sequence
          Length = 169728

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 140   aaattttaatatacctaggtatat 163
             ||||||||||| ||||||||||||
Sbjct: 39200 aaattttaataaacctaggtatat 39177

>gb|AC084295.10| Oryza sativa (japonica cultivar-group) chromosome 3 clone
            OSJNBa0015K03, complete sequence
          Length = 89172

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 140  aaattttaatatacctaggtatat 163
            ||||||||||| ||||||||||||
Sbjct: 5435 aaattttaataaacctaggtatat 5458

>gb|CP000261.1| Streptococcus pyogenes MGAS2096, complete genome
          Length = 1860355

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 302     gtcttgattgttcctttgac 321
               ||||||||||||||||||||
Sbjct: 1075169 gtcttgattgttcctttgac 1075188

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 140      aaattttaatatacctaggtatat 163
                ||||||||||| ||||||||||||
Sbjct: 16011217 aaattttaataaacctaggtatat 16011240

>ref|XM_752290.1| Ustilago maydis 521 hypothetical protein (UM01236.1) partial mRNA
          Length = 1926

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 642  tcaaacaggtgacgctgtat 661
            ||||||||||||||||||||
Sbjct: 1853 tcaaacaggtgacgctgtat 1834

>emb|Z95889.1|HS211A9 Human DNA sequence from clone CTA-211A9 on chromosome 22q12.1, complete
             sequence
          Length = 117939

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 384   ccctcagcagcctcatctct 403
             ||||||||||||||||||||
Sbjct: 46524 ccctcagcagcctcatctct 46543

>emb|AL589766.17| Mouse DNA sequence from clone RP23-19G4 on chromosome 13 contains the
             Vmp gene for vesicular membrane protein P24, complete
             sequence
          Length = 176183

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 450   ccacaagtgactgggccatt 469
             ||||||||||||||||||||
Sbjct: 32225 ccacaagtgactgggccatt 32244

>gb|AE016820.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VII,
              complete sequence
          Length = 1476513

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 137    tacaaattttaatataccta 156
              ||||||||||||||||||||
Sbjct: 363677 tacaaattttaatataccta 363658

>gb|AC000093.5| Homo sapiens Chromosome 22q11 Cosmid Clone carlaa, complete sequence
          Length = 42686

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 435   gcatcctcactgcccccaca 454
             ||||||||||||||||||||
Sbjct: 24547 gcatcctcactgcccccaca 24528



 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 435   gcatcctcactgcccccaca 454
             ||||||||||||||||||||
Sbjct: 21656 gcatcctcactgcccccaca 21637

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 140      aaattttaatatacctaggtatat 163
                ||||||||||| ||||||||||||
Sbjct: 16005751 aaattttaataaacctaggtatat 16005774

>gb|AC096967.18| Homo sapiens 3 BAC RP11-200A1 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 123251

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 370    catcacctcgagcaccctca 389
              ||||||||||||||||||||
Sbjct: 112646 catcacctcgagcaccctca 112665

>gb|AF026687.1|AF026687 Typhula phacorrhiza strain DSH 96-059 12S ribosomal RNA gene,
           partial sequence
          Length = 434

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 130 atcgttgtacaaattttaat 149
           ||||||||||||||||||||
Sbjct: 27  atcgttgtacaaattttaat 8

>gb|AC145610.4| Mus musculus BAC clone RP24-281O20 from 18, complete sequence
          Length = 182640

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 287    tcaccaccaaacatagtctt 306
              ||||||||||||||||||||
Sbjct: 161104 tcaccaccaaacatagtctt 161085

>dbj|AP004953.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT34A24, TM0129,
             complete sequence
          Length = 110487

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 632   gctgcaaaattcaaacaggt 651
             ||||||||||||||||||||
Sbjct: 80966 gctgcaaaattcaaacaggt 80985

>gb|CP000030.1| Anaplasma marginale str. St. Maries, complete genome
          Length = 1197687

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 628     cttggctgcaaaattcaaac 647
               ||||||||||||||||||||
Sbjct: 1187687 cttggctgcaaaattcaaac 1187706

>emb|AL928710.6| Mouse DNA sequence from clone RP23-255P20 on chromosome 2, complete
             sequence
          Length = 180748

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 389   agcagcctcatctcttgcag 408
             ||||||||||||||||||||
Sbjct: 30953 agcagcctcatctcttgcag 30934

>gb|L20860.1|HUMGLYIBBE Human glycoprotein Ib beta mRNA, complete cds
          Length = 2793

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 435  gcatcctcactgcccccaca 454
            ||||||||||||||||||||
Sbjct: 2443 gcatcctcactgcccccaca 2424


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,627,198
Number of Sequences: 3902068
Number of extensions: 6627198
Number of successful extensions: 103792
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103632
Number of HSP's gapped (non-prelim): 160
length of query: 720
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 697
effective length of database: 17,143,297,704
effective search space: 11948878499688
effective search space used: 11948878499688
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)