ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags4d05 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_195905.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0045C13.14), mRNA Length = 1152 Score = 157 bits (79), Expect = 1e-35 Identities = 115/127 (90%) Strand = Plus / Minus Query: 7 tcatcatcagcataataagacatctctgaattttgtctctcgacatagttagcacctttt 66 |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct: 833 tcatcatcagcataataagaaatctctgaattttgtctctcaacatagttagcacctttt 774 Query: 67 cttgtcgtagcactaggcccgtgcgggcttggacttctgatgaaattgggctcctgctct 126 |||||| | ||||| ||||| || ||||| |||||||||||||| |||| |||||| || Sbjct: 773 cttgtcatggcactcggcccatgtgggctaggacttctgatgaagttggactcctgttca 714 Query: 127 gggaact 133 ||||||| Sbjct: 713 gggaact 707
>dbj|AK106542.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-108-E10, full insert sequence Length = 1476 Score = 157 bits (79), Expect = 1e-35 Identities = 115/127 (90%) Strand = Plus / Minus Query: 7 tcatcatcagcataataagacatctctgaattttgtctctcgacatagttagcacctttt 66 |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct: 906 tcatcatcagcataataagaaatctctgaattttgtctctcaacatagttagcacctttt 847 Query: 67 cttgtcgtagcactaggcccgtgcgggcttggacttctgatgaaattgggctcctgctct 126 |||||| | ||||| ||||| || ||||| |||||||||||||| |||| |||||| || Sbjct: 846 cttgtcatggcactcggcccatgtgggctaggacttctgatgaagttggactcctgttca 787 Query: 127 gggaact 133 ||||||| Sbjct: 786 gggaact 780
>dbj|AK099084.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023005I07, full insert sequence Length = 1449 Score = 157 bits (79), Expect = 1e-35 Identities = 115/127 (90%) Strand = Plus / Minus Query: 7 tcatcatcagcataataagacatctctgaattttgtctctcgacatagttagcacctttt 66 |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct: 907 tcatcatcagcataataagaaatctctgaattttgtctctcaacatagttagcacctttt 848 Query: 67 cttgtcgtagcactaggcccgtgcgggcttggacttctgatgaaattgggctcctgctct 126 |||||| | ||||| ||||| || ||||| |||||||||||||| |||| |||||| || Sbjct: 847 cttgtcatggcactcggcccatgtgggctaggacttctgatgaagttggactcctgttca 788 Query: 127 gggaact 133 ||||||| Sbjct: 787 gggaact 781
>dbj|AK073215.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033015K15, full insert sequence Length = 1474 Score = 157 bits (79), Expect = 1e-35 Identities = 115/127 (90%) Strand = Plus / Minus Query: 7 tcatcatcagcataataagacatctctgaattttgtctctcgacatagttagcacctttt 66 |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct: 907 tcatcatcagcataataagaaatctctgaattttgtctctcaacatagttagcacctttt 848 Query: 67 cttgtcgtagcactaggcccgtgcgggcttggacttctgatgaaattgggctcctgctct 126 |||||| | ||||| ||||| || ||||| |||||||||||||| |||| |||||| || Sbjct: 847 cttgtcatggcactcggcccatgtgggctaggacttctgatgaagttggactcctgttca 788 Query: 127 gggaact 133 ||||||| Sbjct: 787 gggaact 781
>gb|AC079634.3|AC079634 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0045C13, from Chromosome 10, complete sequence Length = 161250 Score = 115 bits (58), Expect = 4e-23 Identities = 64/66 (96%) Strand = Plus / Minus Query: 7 tcatcatcagcataataagacatctctgaattttgtctctcgacatagttagcacctttt 66 |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct: 103207 tcatcatcagcataataagaaatctctgaattttgtctctcaacatagttagcacctttt 103148 Query: 67 cttgtc 72 |||||| Sbjct: 103147 cttgtc 103142 Score = 46.1 bits (23), Expect = 0.030 Identities = 38/43 (88%) Strand = Plus / Minus Query: 91 gggcttggacttctgatgaaattgggctcctgctctgggaact 133 ||||| |||||||||||||| |||| |||||| || ||||||| Sbjct: 103023 gggctaggacttctgatgaagttggactcctgttcagggaact 102981
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 115 bits (58), Expect = 4e-23 Identities = 64/66 (96%) Strand = Plus / Minus Query: 7 tcatcatcagcataataagacatctctgaattttgtctctcgacatagttagcacctttt 66 |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct: 9870728 tcatcatcagcataataagaaatctctgaattttgtctctcaacatagttagcacctttt 9870669 Query: 67 cttgtc 72 |||||| Sbjct: 9870668 cttgtc 9870663 Score = 46.1 bits (23), Expect = 0.030 Identities = 38/43 (88%) Strand = Plus / Minus Query: 91 gggcttggacttctgatgaaattgggctcctgctctgggaact 133 ||||| |||||||||||||| |||| |||||| || ||||||| Sbjct: 9870544 gggctaggacttctgatgaagttggactcctgttcagggaact 9870502
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 115 bits (58), Expect = 4e-23 Identities = 64/66 (96%) Strand = Plus / Minus Query: 7 tcatcatcagcataataagacatctctgaattttgtctctcgacatagttagcacctttt 66 |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct: 9876767 tcatcatcagcataataagaaatctctgaattttgtctctcaacatagttagcacctttt 9876708 Query: 67 cttgtc 72 |||||| Sbjct: 9876707 cttgtc 9876702 Score = 46.1 bits (23), Expect = 0.030 Identities = 38/43 (88%) Strand = Plus / Minus Query: 91 gggcttggacttctgatgaaattgggctcctgctctgggaact 133 ||||| |||||||||||||| |||| |||||| || ||||||| Sbjct: 9876583 gggctaggacttctgatgaagttggactcctgttcagggaact 9876541
>gb|AY109348.1| Zea mays CL1296_1 mRNA sequence Length = 2139 Score = 95.6 bits (48), Expect = 4e-17 Identities = 90/104 (86%) Strand = Plus / Minus Query: 12 atcagcataataagacatctctgaattttgtctctcgacatagttagcaccttttcttgt 71 ||||||||||||||| ||||| ||||||||||| || ||| ||||| ||||||||||| Sbjct: 1593 atcagcataataagaaatctcagaattttgtctatcaacagtattagcgccttttcttgt 1534 Query: 72 cgtagcactaggcccgtgcgggcttggacttctgatgaaattgg 115 | |||||| |||||| || ||||||||||| |||||||| |||| Sbjct: 1533 catagcaccaggcccatgtgggcttggactcctgatgaagttgg 1490
>gb|AC099615.6| Mus musculus chromosome 1, clone RP23-412G3, complete sequence Length = 204191 Score = 46.1 bits (23), Expect = 0.030 Identities = 23/23 (100%) Strand = Plus / Minus Query: 24 agacatctctgaattttgtctct 46 ||||||||||||||||||||||| Sbjct: 13311 agacatctctgaattttgtctct 13289
>emb|AL662815.13| Mouse DNA sequence from clone RP23-361M22 on chromosome 1 Contains part of the gene for ortholog of human amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 19 (ALS2CR19) and a novel gene, complete sequence Length = 155204 Score = 46.1 bits (23), Expect = 0.030 Identities = 23/23 (100%) Strand = Plus / Plus Query: 24 agacatctctgaattttgtctct 46 ||||||||||||||||||||||| Sbjct: 80235 agacatctctgaattttgtctct 80257
>gb|AC158915.4| Mus musculus chromosome 8, clone RP23-146N20, complete sequence Length = 207367 Score = 42.1 bits (21), Expect = 0.47 Identities = 21/21 (100%) Strand = Plus / Minus Query: 27 catctctgaattttgtctctc 47 ||||||||||||||||||||| Sbjct: 49312 catctctgaattttgtctctc 49292
>emb|BX901910.12| Zebrafish DNA sequence from clone DKEY-14I8 in linkage group 7, complete sequence Length = 131855 Score = 42.1 bits (21), Expect = 0.47 Identities = 21/21 (100%) Strand = Plus / Minus Query: 23 aagacatctctgaattttgtc 43 ||||||||||||||||||||| Sbjct: 96784 aagacatctctgaattttgtc 96764
>gb|AC121140.7| Mus musculus chromosome 8, clone RP23-429G12, complete sequence Length = 201440 Score = 42.1 bits (21), Expect = 0.47 Identities = 21/21 (100%) Strand = Plus / Minus Query: 27 catctctgaattttgtctctc 47 ||||||||||||||||||||| Sbjct: 2381 catctctgaattttgtctctc 2361
>gb|AC103597.21| Mus musculus chromosome 18, clone RP23-435G4, complete sequence Length = 221083 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 catctctgaattttgtctct 46 |||||||||||||||||||| Sbjct: 86007 catctctgaattttgtctct 86026
>gb|AC126695.4| Mus musculus BAC clone RP23-313D2 from 18, complete sequence Length = 171427 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 catctctgaattttgtctct 46 |||||||||||||||||||| Sbjct: 13969 catctctgaattttgtctct 13950
>emb|AL450312.10| Human DNA sequence from clone RP11-138L24 on chromosome 9, complete sequence Length = 164559 Score = 40.1 bits (20), Expect = 1.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 12 atcagcataataagacatctctga 35 ||||||||||||||| |||||||| Sbjct: 97819 atcagcataataagaaatctctga 97842
>gb|AC157773.6| Mus musculus chromosome 8, clone RP24-161L20, complete sequence Length = 179186 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 128 ggaactttgttgctatggta 147 |||||||||||||||||||| Sbjct: 34626 ggaactttgttgctatggta 34607
>gb|AC009741.5|AC009741 Drosophila melanogaster, chromosome 3R, region 87B-87B, BAC clone BACR44K17, complete sequence Length = 166863 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 tcttcatcatcagcataata 23 |||||||||||||||||||| Sbjct: 85311 tcttcatcatcagcataata 85330
>gb|AC007724.4|AC007724 Drosophila melanogaster, chromosome 3R, region 87B-87B, BAC clone BACR30N15, complete sequence Length = 178199 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 tcttcatcatcagcataata 23 |||||||||||||||||||| Sbjct: 176823 tcttcatcatcagcataata 176842
>ref|XM_233867.3| PREDICTED: Rattus norvegicus anaplastic lymphoma kinase (Alk), mRNA Length = 10686 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 107 tgaaattgggctcctgctct 126 |||||||||||||||||||| Sbjct: 2721 tgaaattgggctcctgctct 2740
>gb|AE003695.2| Drosophila melanogaster chromosome 3R, section 33 of 118 of the complete sequence Length = 225655 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 tcttcatcatcagcataata 23 |||||||||||||||||||| Sbjct: 116606 tcttcatcatcagcataata 116625
>gb|AC121131.14| Mus musculus chromosome 8, clone RP23-187D7, complete sequence Length = 188634 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 128 ggaactttgttgctatggta 147 |||||||||||||||||||| Sbjct: 117226 ggaactttgttgctatggta 117207
>emb|AJ277952.1|SDO277952 Suberites domuncula snzerr gene for err-related and stress induced protein Length = 2804 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 agcataataagacatctctg 34 |||||||||||||||||||| Sbjct: 2576 agcataataagacatctctg 2595
>gb|BC101861.1| Rattus norvegicus nicolin 1, mRNA (cDNA clone MGC:124727 IMAGE:7936966), complete cds Length = 2170 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 116 gctcctgctctgggaactt 134 ||||||||||||||||||| Sbjct: 2090 gctcctgctctgggaactt 2072
>ref|NM_001034999.1| Rattus norvegicus nicolin 1 (Nicn1), mRNA Length = 2170 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 116 gctcctgctctgggaactt 134 ||||||||||||||||||| Sbjct: 2090 gctcctgctctgggaactt 2072
>ref|XM_421643.1| PREDICTED: Gallus gallus similar to AN1, ubiquitin-like, homolog (LOC423771), mRNA Length = 3153 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 2 catcttcatcatcagcata 20 ||||||||||||||||||| Sbjct: 811 catcttcatcatcagcata 793
>gb|AC160469.5| Mus musculus chromosome 5, clone RP23-318I19, complete sequence Length = 221860 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 117 ctcctgctctgggaacttt 135 ||||||||||||||||||| Sbjct: 123170 ctcctgctctgggaacttt 123152
>emb|AL157705.18| Human DNA sequence from clone RP11-148C9 on chromosome 10 Contains part of the gene for SEC15 (S. cerevisiae)-like (SEC15L) and one CpG island, complete sequence Length = 76763 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 22 taagacatctctgaatttt 40 ||||||||||||||||||| Sbjct: 70393 taagacatctctgaatttt 70375
>emb|AL138815.6| Human DNA sequence from clone RP11-141F12 on chromosome 13 Contains part of the ATP8A2 gene for ATPase, aminophospholipid transporter-like, Class I, type 8A, member 2 (ML-1 protein (IB, ATP, ML-1, ATPIB, DKFZP434B1913)), a novel pseudogene and a CpG island, complete sequence Length = 160210 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 125 ctgggaactttgttgctat 143 ||||||||||||||||||| Sbjct: 55729 ctgggaactttgttgctat 55747
>emb|BX883046.1| Rattus norvegicus chromosome 20, major histocompatibility complex, assembled from 40 BACs, strain Brown Norway (BN/ssNHsd), RT1n haplotype; segment 5/11 Length = 349047 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 19 taataagacatctctgaat 37 ||||||||||||||||||| Sbjct: 325869 taataagacatctctgaat 325851
>emb|AL109770.1|SPAC15E1 S.pombe chromosome I cosmid c15E1 Length = 12855 Score = 38.2 bits (19), Expect = 7.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 1 gcatcttcatcatcagcataata 23 ||||||||| ||||||||||||| Sbjct: 10818 gcatcttcaccatcagcataata 10796
>emb|AL935035.6| Zebrafish DNA sequence from clone CH211-180B22 in linkage group 20 Contains the 5' end of the gene for a novel protein similar to vertebrate meningioma expressed antigen 6 (coiled-coil proline-rich) (MGEA6), the gene for a novel protein similar to vertebrate melanoma inhibitory activity 2 (MIA2), the gene for a novel protein similar to mouse and human TATA box binding protein (TBP)-associated factor RNA polymerase I A 48kDa (TAF1A), the 3' end of the gene for a novel protein similar to vertebrate dual specificity phosphatase 10 (DUSP10) and four CpG islands, complete sequence Length = 151114 Score = 38.2 bits (19), Expect = 7.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 2 catcttcatcatcagcataataa 24 |||||||||||||| |||||||| Sbjct: 142164 catcttcatcatcatcataataa 142186
>gb|AF380128.1| Schizosaccharomyces pombe glutaredoxin 2 (grx2) gene, complete cds Length = 1642 Score = 38.2 bits (19), Expect = 7.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 1 gcatcttcatcatcagcataata 23 ||||||||| ||||||||||||| Sbjct: 189 gcatcttcaccatcagcataata 167
>ref|NM_001019732.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPAC15E1.08), partial mRNA Length = 534 Score = 38.2 bits (19), Expect = 7.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 1 gcatcttcatcatcagcataata 23 ||||||||| ||||||||||||| Sbjct: 434 gcatcttcaccatcagcataata 412
>gb|AC007185.12|AC007185 Drosophila melanogaster, chromosome 2L, region 36A-, BAC clone BACR44N04, complete sequence Length = 190651 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 3 atcttcatcatcagcataa 21 ||||||||||||||||||| Sbjct: 136287 atcttcatcatcagcataa 136269
>gb|AE003651.2| Drosophila melanogaster chromosome 2L, section 60 of 83 of the complete sequence Length = 254646 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 3 atcttcatcatcagcataa 21 ||||||||||||||||||| Sbjct: 232664 atcttcatcatcagcataa 232646
>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome Length = 5411809 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 1 gcatcttcatcatcagcat 19 ||||||||||||||||||| Sbjct: 2560926 gcatcttcatcatcagcat 2560908
>gb|AC108848.12| Mus musculus chromosome 5, clone RP23-300K5, complete sequence Length = 231380 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 117 ctcctgctctgggaacttt 135 ||||||||||||||||||| Sbjct: 190912 ctcctgctctgggaacttt 190930
>dbj|AP006374.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT47L09, TM0218, complete sequence Length = 113213 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 2 catcttcatcatcagcata 20 ||||||||||||||||||| Sbjct: 79500 catcttcatcatcagcata 79518 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,469,669 Number of Sequences: 3902068 Number of extensions: 1469669 Number of successful extensions: 114124 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 39 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 113946 Number of HSP's gapped (non-prelim): 178 length of query: 152 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 131 effective length of database: 17,151,101,840 effective search space: 2246794341040 effective search space used: 2246794341040 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
