ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags4c24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|Z33632.1|HVATPAX H.vulgare (Gerbel) mRNA for adenosine triph... 212 2e-52
2gb|U84269.1|HVU84269 Hordeum vulgare vacuolar proton-translocati... 212 2e-52
3gb|U84268.1|HVU84268 Hordeum vulgare vacuolar proton-translocati... 212 2e-52
4gb|DQ344624.1| Triticum aestivum vacuolar ATP synthase subunit E... 149 2e-33
5gb|AC144459.8| Medicago truncatula clone mth2-23o13, complete se... 40 1.5
6ref|XM_636093.1| Dictyostelium discoideum hypothetical protein (... 38 5.9
7ref|XM_419011.1| PREDICTED: Gallus gallus similar to AKAP-associ... 38 5.9
8emb|AL359272.9| Human DNA sequence from clone RP11-554P16 on chr... 38 5.9
9emb|AL954667.9| Zebrafish DNA sequence from clone CH211-214K3 in... 38 5.9
10emb|BX663525.6| Zebrafish DNA sequence from clone DKEY-97A13 in ... 38 5.9
11emb|BX931663.2| Gallus gallus finished cDNA, clone ChEST741a19 38 5.9
12emb|BX930249.1| Gallus gallus finished cDNA, clone ChEST584n2 38 5.9
13emb|AL928917.9| Zebrafish DNA sequence from clone CH211-103D12 i... 38 5.9
14emb|BX005367.10| Zebrafish DNA sequence from clone DKEY-97L20 in... 38 5.9
15gb|DQ272489.1| Triticum aestivum vacuolar proton ATPase subunit ... 38 5.9 
>emb|Z33632.1|HVATPAX H.vulgare (Gerbel) mRNA for adenosine triphosphatase
          Length = 1034

 Score =  212 bits (107), Expect = 2e-52
 Identities = 120/126 (95%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaatactttaaacaacaatgttcgcaaaaccgggcagagntcggngcacctgntggggg 60
           |||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||
Sbjct: 899 agaatactttaaacaacaatgttcgcaaaaccgggcagagttcggtgcacctgctggggg 840

                                                                       
Query: 61  tcaaaccagcagccattttacatagaaacggttggnccatcaccaaantacaagcacgca 120
           ||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||
Sbjct: 839 tcaaaccagcagccattttacatagaaacggttgtaccatcaccaaaatacaagcacgca 780

                 
Query: 121 ttatgc 126
           ||||||
Sbjct: 779 ttatgc 774
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>gb|U84269.1|HVU84269 Hordeum vulgare vacuolar proton-translocating ATPase subunit E
           (Ylp) mRNA, complete cds
          Length = 1057

 Score =  212 bits (107), Expect = 2e-52
 Identities = 120/126 (95%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaatactttaaacaacaatgttcgcaaaaccgggcagagntcggngcacctgntggggg 60
           |||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||
Sbjct: 939 agaatactttaaacaacaatgttcgcaaaaccgggcagagttcggtgcacctgctggggg 880

                                                                       
Query: 61  tcaaaccagcagccattttacatagaaacggttggnccatcaccaaantacaagcacgca 120
           ||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||
Sbjct: 879 tcaaaccagcagccattttacatagaaacggttgtaccatcaccaaaatacaagcacgca 820

                 
Query: 121 ttatgc 126
           ||||||
Sbjct: 819 ttatgc 814
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>gb|U84268.1|HVU84268 Hordeum vulgare vacuolar proton-translocating ATPase subunit E
           (Ylp) mRNA, complete cds
          Length = 1012

 Score =  212 bits (107), Expect = 2e-52
 Identities = 120/126 (95%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaatactttaaacaacaatgttcgcaaaaccgggcagagntcggngcacctgntggggg 60
           |||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||
Sbjct: 939 agaatactttaaacaacaatgttcgcaaaaccgggcagagttcggtgcacctgctggggg 880

                                                                       
Query: 61  tcaaaccagcagccattttacatagaaacggttggnccatcaccaaantacaagcacgca 120
           ||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||
Sbjct: 879 tcaaaccagcagccattttacatagaaacggttgtaccatcaccaaaatacaagcacgca 820

                 
Query: 121 ttatgc 126
           ||||||
Sbjct: 819 ttatgc 814
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>gb|DQ344624.1| Triticum aestivum vacuolar ATP synthase subunit E (VATE) mRNA,
           complete cds
          Length = 1970

 Score =  149 bits (75), Expect = 2e-33
 Identities = 113/126 (89%), Gaps = 1/126 (0%)
 Strand = Plus / Minus

                                                                       
Query: 2   gaatactttaaacaa-caatgttcgcaaaaccgggcagagntcggngcacctgntggggg 60
           ||||||||||||||| |||||||||||||||||||| ||| |||  ||||||| ||||||
Sbjct: 948 gaatactttaaacaatcaatgttcgcaaaaccgggcggagttcgttgcacctgctggggg 889

                                                                       
Query: 61  tcaaaccagcagccattttacatagaaacggttggnccatcaccaaantacaagcacgca 120
           ||||||||||||||||||||||||||||| | ||  ||||||||||| ||||||  ||||
Sbjct: 888 tcaaaccagcagccattttacatagaaacagctgtaccatcaccaaaatacaagtgcgca 829

                 
Query: 121 ttatgc 126
           ||||||
Sbjct: 828 ttatgc 823
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>gb|AC144459.8| Medicago truncatula clone mth2-23o13, complete sequence
          Length = 114098

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 9     ttaaacaacaatgttcgcaa 28
             ||||||||||||||||||||
Sbjct: 79709 ttaaacaacaatgttcgcaa 79690
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>ref|XM_636093.1| Dictyostelium discoideum hypothetical protein (DDB0205210), partial
            mRNA
          Length = 2970

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 3    aatactttaaacaacaatg 21
            |||||||||||||||||||
Sbjct: 1768 aatactttaaacaacaatg 1750
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>ref|XM_419011.1| PREDICTED: Gallus gallus similar to AKAP-associated sperm protein
           (LOC420926), mRNA
          Length = 1112

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 57  ggggtcaaaccagcagccatttt 79
           ||||||||||||||| |||||||
Sbjct: 390 ggggtcaaaccagcatccatttt 368
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>emb|AL359272.9| Human DNA sequence from clone RP11-554P16 on chromosome X Contains the
             5' end of gene KIAA1202 and a CpG island, complete
             sequence
          Length = 173510

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 66    ccagcagccattttacatagaaa 88
             ||||||||||||||| |||||||
Sbjct: 53587 ccagcagccattttaaatagaaa 53609
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>emb|AL954667.9| Zebrafish DNA sequence from clone CH211-214K3 in linkage group 25,
            complete sequence
          Length = 202657

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 5    tactttaaacaacaatgtt 23
            |||||||||||||||||||
Sbjct: 5928 tactttaaacaacaatgtt 5910
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>emb|BX663525.6| Zebrafish DNA sequence from clone DKEY-97A13 in linkage group 2, complete
              sequence
          Length = 261927

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 5      tactttaaacaacaatgtt 23
              |||||||||||||||||||
Sbjct: 110877 tactttaaacaacaatgtt 110859
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>emb|BX931663.2| Gallus gallus finished cDNA, clone ChEST741a19
          Length = 1007

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 57  ggggtcaaaccagcagccatttt 79
           ||||||||||||||| |||||||
Sbjct: 285 ggggtcaaaccagcatccatttt 263
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>emb|BX930249.1| Gallus gallus finished cDNA, clone ChEST584n2
          Length = 795

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 57  ggggtcaaaccagcagccatttt 79
           ||||||||||||||| |||||||
Sbjct: 390 ggggtcaaaccagcatccatttt 368
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>emb|AL928917.9| Zebrafish DNA sequence from clone CH211-103D12 in linkage group 1,
              complete sequence
          Length = 176961

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 5      tactttaaacaacaatgtt 23
              |||||||||||||||||||
Sbjct: 147061 tactttaaacaacaatgtt 147079
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>emb|BX005367.10| Zebrafish DNA sequence from clone DKEY-97L20 in linkage group 22,
              complete sequence
          Length = 243709

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 5      tactttaaacaacaatgtt 23
              |||||||||||||||||||
Sbjct: 135036 tactttaaacaacaatgtt 135018
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>gb|DQ272489.1| Triticum aestivum vacuolar proton ATPase subunit E mRNA, complete
           cds
          Length = 742

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 27/30 (90%)
 Strand = Plus / Minus

                                         
Query: 97  ccatcaccaaantacaagcacgcattatgc 126
           ||||||||||| ||||||  ||||||||||
Sbjct: 741 ccatcaccaaaatacaagtgcgcattatgc 712


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 676,868
Number of Sequences: 3902068
Number of extensions: 676868
Number of successful extensions: 46046
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46026
Number of HSP's gapped (non-prelim): 19
length of query: 126
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 105
effective length of database: 17,151,101,840
effective search space: 1800865693200
effective search space used: 1800865693200
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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