Clone Information

BLAST Search Result

Clone Name	rbags3n17
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	PHYC_ORYSA (Q9ZWI9) Phytochrome C	175	6e-44
2	PHYC_SORBI (P93528) Phytochrome C	174	1e-43
3	PHY_PICAB (Q40762) Phytochrome	109	4e-24
4	PHYC_ARATH (P14714) Phytochrome C	99	5e-21
5	PHY1_PHYPA (P36505) Phytochrome 1	97	3e-20
6	PHY2_CERPU (Q39557) Phytochrome 2	94	2e-19
7	PHY1_SELMA (Q01549) Phytochrome 1	94	3e-19
8	PHY_PINSY (Q41046) Phytochrome	90	4e-18
9	PHYB_SOYBN (P42499) Phytochrome B	85	1e-16
10	PHYA_PETCR (P55141) Phytochrome A	84	2e-16
11	PHYA_SOLTU (P30733) Phytochrome A	83	4e-16
12	PHYA_CUCPE (P06592) Phytochrome A	83	5e-16
13	PHYA_ARATH (P14712) Phytochrome A	82	6e-16
14	PHYA1_TOBAC (P33530) Phytochrome A1	81	1e-15
15	PHYB_TOBAC (P29130) Phytochrome B	81	1e-15
16	PHY_MOUSC (P33529) Phytochrome	80	3e-15
17	PHYA_PEA (P15001) Phytochrome A	80	3e-15
18	PHYA_LATSA (P93673) Phytochrome type A	79	5e-15
19	PHYB_SOLTU (P34094) Phytochrome B	79	5e-15
20	PHYB1_LYCES (Q9ZS62) Phytochrome B1	78	1e-14
21	PHYD_ARATH (P42497) Phytochrome D	78	2e-14
22	PHYE_IPONI (P55004) Phytochrome E	72	1e-12
23	PHYB_ARATH (P14713) Phytochrome B	71	2e-12
24	PHYA_SOYBN (P42500) Phytochrome A	70	4e-12
25	PHYB_ORYSA (P25764) Phytochrome B	69	7e-12
26	PHYB_SORBI (P93527) Phytochrome B	67	2e-11
27	PHY_ADICA (P42496) Phytochrome 1	67	3e-11
28	PHYA_POPTM (O49934) Phytochrome A	66	5e-11
29	PHYA4_AVESA (P06594) Phytochrome A type 4 (AP4)	64	3e-10
30	PHYE_ARATH (P42498) Phytochrome E	60	3e-09
31	PHYA3_AVESA (P06593) Phytochrome A type 3 (AP3)	60	4e-09
32	PHYA_ORYSA (P10931) Phytochrome A	59	8e-09
33	PHYA1_MAIZE (P19862) Phytochrome A	57	2e-08
34	PHYA_SORBI (P93526) Phytochrome a	57	3e-08
35	BVGS_BORPA (P40330) Virulence sensor protein bvgS precursor (EC ...	35	0.12
36	BVGS_BORBR (P26762) Virulence sensor protein bvgS precursor (EC ...	35	0.15
37	BVGS_BORPE (P16575) Virulence sensor protein bvgS precursor (EC ...	34	0.26
38	TCSB_EMENI (Q9P4U6) Two-component system protein B precursor (EC...	32	1.3
39	TMPSD_HUMAN (Q9BYE2) Transmembrane protease, serine 13 (EC 3.4.2...	31	1.7
40	RCSC_ECOLI (P14376) Sensor kinase protein rcsC (EC 2.7.13.3) (Ca...	30	2.9
41	RCSC_SALTY (P58662) Sensor protein rcsC (EC 2.7.13.3) (Capsular ...	30	3.8
42	RCSC_SALTI (Q56128) Sensor protein rcsC (EC 2.7.13.3) (Capsular ...	30	3.8
43	BIO5_YEAST (P53744) 7-keto 8-aminopelargonic acid transported (K...	29	6.5
44	NTRB_BRASR (P10578) Nitrogen regulation protein ntrB (EC 2.7.13.3)	29	6.5
45	PAG_BACAN (P13423) Protective antigen precursor (PA) (PA-83) (PA...	29	8.5
46	G11A_ORYSA (P47997) Protein kinase G11A (EC 2.7.11.1)	29	8.5
47	HIS6_IDILO (Q5QWQ5) Imidazole glycerol phosphate synthase subuni...	29	8.5

>PHYC_ORYSA (Q9ZWI9) Phytochrome C|
          Length = 1137

 Score =  175 bits (444), Expect = 6e-44
 Identities = 87/96 (90%), Positives = 93/96 (96%)
 Frame = -1

Query: 509  PAEGPIVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFRHGPGVSREGLGLH 330
            PAEGPIVLQVIP+ E+IGSGMQIAHLEFR+VHPAPGVPEALIQEMFRH PG SREGLGL+
Sbjct: 1031 PAEGPIVLQVIPRMENIGSGMQIAHLEFRLVHPAPGVPEALIQEMFRHSPGASREGLGLY 1090

Query: 329  ISQKLVKTMSGTVQYLREAESSSFIVLVEFPVAQLN 222
            ISQKLVKTMSGTVQYLRE+ESSSFIVLVEFPVAQL+
Sbjct: 1091 ISQKLVKTMSGTVQYLRESESSSFIVLVEFPVAQLS 1126

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>PHYC_SORBI (P93528) Phytochrome C|
          Length = 1135

 Score =  174 bits (441), Expect = 1e-43
 Identities = 85/96 (88%), Positives = 93/96 (96%)
 Frame = -1

Query: 509  PAEGPIVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFRHGPGVSREGLGLH 330
            PAEGPIVLQVIPKKE+IGSGMQIAHLEFR+VHPAPGVPEALIQEMFRH P VSREGLGL+
Sbjct: 1029 PAEGPIVLQVIPKKENIGSGMQIAHLEFRIVHPAPGVPEALIQEMFRHNPEVSREGLGLY 1088

Query: 329  ISQKLVKTMSGTVQYLREAESSSFIVLVEFPVAQLN 222
            I QKLVKTMSGTVQYLREA++SSFI+L+EFPVAQL+
Sbjct: 1089 ICQKLVKTMSGTVQYLREADTSSFIILIEFPVAQLS 1124

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>PHY_PICAB (Q40762) Phytochrome|
          Length = 1136

 Score =  109 bits (273), Expect = 4e-24
 Identities = 51/93 (54%), Positives = 70/93 (75%)
 Frame = -1

Query: 506  AEGPIVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFRHGPGVSREGLGLHI 327
            +EG +  +V+P K H+GSG+ + H+EFR+ H   G+PE LI+EMF H   + +EGLGL++
Sbjct: 1040 SEGWVGNKVVPTKRHLGSGVNVMHMEFRITHSGQGIPEELIKEMFVHNQDMFQEGLGLYM 1099

Query: 326  SQKLVKTMSGTVQYLREAESSSFIVLVEFPVAQ 228
             Q+LVK M+G VQYLREA  SSFI+ VEFP+AQ
Sbjct: 1100 CQQLVKIMNGDVQYLREAGRSSFIINVEFPLAQ 1132

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>PHYC_ARATH (P14714) Phytochrome C|
          Length = 1111

 Score = 99.4 bits (246), Expect = 5e-21
 Identities = 50/89 (56%), Positives = 68/89 (76%), Gaps = 2/89 (2%)
 Frame = -1

Query: 494  IVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFRH-GPGVSREGLGLHISQK 318
            +  +VI + E IG  M+   LEFR++HPAPG+PE L++EMF+    G SREGLGLHI+QK
Sbjct: 1022 VSFKVIARIEAIGKRMKRVELEFRIIHPAPGLPEDLVREMFQPLRKGTSREGLGLHITQK 1081

Query: 317  LVKTMS-GTVQYLREAESSSFIVLVEFPV 234
            LVK M  GT++YLRE+E S+F++L EFP+
Sbjct: 1082 LVKLMERGTLRYLRESEMSAFVILTEFPL 1110

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>PHY1_PHYPA (P36505) Phytochrome 1|
          Length = 1132

 Score = 97.1 bits (240), Expect = 3e-20
 Identities = 43/92 (46%), Positives = 66/92 (71%)
 Frame = -1

Query: 503  EGPIVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFRHGPGVSREGLGLHIS 324
            EG + ++V+P ++ +G  + + HLEFRV HP  G+PE L+ EM+  G G+++EGLGL++ 
Sbjct: 1024 EGWVKIKVVPTRKRLGGSVHVVHLEFRVSHPGAGLPEELVLEMYDRGKGMTQEGLGLNMC 1083

Query: 323  QKLVKTMSGTVQYLREAESSSFIVLVEFPVAQ 228
            +KLV+ M+G V Y+REA    F+V VE P+AQ
Sbjct: 1084 RKLVRLMNGDVHYVREAMQCYFVVNVELPMAQ 1115

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>PHY2_CERPU (Q39557) Phytochrome 2|
          Length = 1121

 Score = 94.0 bits (232), Expect = 2e-19
 Identities = 41/93 (44%), Positives = 66/93 (70%)
 Frame = -1

Query: 506  AEGPIVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFRHGPGVSREGLGLHI 327
            +EG + ++V+P ++ +G  + + HLEFRV HP  G+P+ L+ EM+    G+++EGLGL++
Sbjct: 1021 SEGWVKIKVVPTRKRLGGNVHVMHLEFRVSHPGGGLPDELVLEMYDRAKGMTQEGLGLNM 1080

Query: 326  SQKLVKTMSGTVQYLREAESSSFIVLVEFPVAQ 228
             +KLV+ M+G VQY+RE     F+V VE P+AQ
Sbjct: 1081 CRKLVRLMNGDVQYVRENAQCYFVVYVELPMAQ 1113

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>PHY1_SELMA (Q01549) Phytochrome 1|
          Length = 1134

 Score = 93.6 bits (231), Expect = 3e-19
 Identities = 42/93 (45%), Positives = 66/93 (70%)
 Frame = -1

Query: 506  AEGPIVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFRHGPGVSREGLGLHI 327
            +E  + ++V   ++ +G  + + HLEFR+ HP  G+PE L+QEMF  G G+++EGLGL +
Sbjct: 1029 SENWVGIKVATSRKRLGGVVHVMHLEFRITHPGVGLPEELVQEMFDRGRGMTQEGLGLSM 1088

Query: 326  SQKLVKTMSGTVQYLREAESSSFIVLVEFPVAQ 228
             +KLVK M+G V+Y+REA  + F+V +E P+AQ
Sbjct: 1089 CRKLVKLMNGEVEYIREAGKNYFLVSLELPLAQ 1121

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>PHY_PINSY (Q41046) Phytochrome|
          Length = 1131

 Score = 89.7 bits (221), Expect = 4e-18
 Identities = 39/92 (42%), Positives = 63/92 (68%)
 Frame = -1

Query: 503  EGPIVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFRHGPGVSREGLGLHIS 324
            EG + ++V P  + +G G+ + HLEFR+ HP  G+P  L+Q++F      ++EG+GL + 
Sbjct: 1032 EGWVAIKVFPTLKQLGGGLHVVHLEFRITHPGLGLPAELVQDLFDRSQWATQEGVGLSMC 1091

Query: 323  QKLVKTMSGTVQYLREAESSSFIVLVEFPVAQ 228
            +KL+K M+G V+Y+RE+    F+V VEFP+AQ
Sbjct: 1092 RKLLKLMNGDVRYIRESGICYFLVNVEFPMAQ 1123

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>PHYB_SOYBN (P42499) Phytochrome B|
          Length = 1156

 Score = 85.1 bits (209), Expect = 1e-16
 Identities = 41/92 (44%), Positives = 62/92 (67%)
 Frame = -1

Query: 503  EGPIVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFRHGPGVSREGLGLHIS 324
            +G + + V P+ + I  G+ + H EFR+V P  G+P  LIQ+MF +    ++EGLGL +S
Sbjct: 1059 DGWVEIHVRPRIKQISDGLTLLHAEFRMVCPGEGLPPELIQDMFNNSRWGTQEGLGLSMS 1118

Query: 323  QKLVKTMSGTVQYLREAESSSFIVLVEFPVAQ 228
            +K++K M+G VQY+REAE   F VL+E PV +
Sbjct: 1119 RKILKLMNGEVQYIREAERCYFYVLLELPVTR 1150

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>PHYA_PETCR (P55141) Phytochrome A|
          Length = 1129

 Score = 84.0 bits (206), Expect = 2e-16
 Identities = 41/93 (44%), Positives = 57/93 (61%)
 Frame = -1

Query: 509  PAEGPIVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFRHGPGVSREGLGLH 330
            P  G + + V   ++++G  +Q+ HLEFR+ H   GVPE  + +MF      S EG+ L 
Sbjct: 1032 PVGGHLGISVTLTEDNLGQSVQLVHLEFRITHTGAGVPEEAVSQMFGSDSETSEEGISLL 1091

Query: 329  ISQKLVKTMSGTVQYLREAESSSFIVLVEFPVA 231
            IS+KLVK M+G V YLREA  S+FI+ VE   A
Sbjct: 1092 ISRKLVKLMNGDVHYLREAGKSTFIITVELAAA 1124

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>PHYA_SOLTU (P30733) Phytochrome A|
          Length = 1123

 Score = 83.2 bits (204), Expect = 4e-16
 Identities = 44/93 (47%), Positives = 59/93 (63%)
 Frame = -1

Query: 509  PAEGPIVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFRHGPGVSREGLGLH 330
            P+ G + +     K+ IG  +Q+A LEFR+ H   GVPE L+ +MF      S EG+ L 
Sbjct: 1027 PSGGKLSISGKLTKDRIGESVQLALLEFRIRHTGGGVPEELLSQMFGSEADASEEGISLL 1086

Query: 329  ISQKLVKTMSGTVQYLREAESSSFIVLVEFPVA 231
            +S+KLVK M+G VQYLREA  S+FI+ VE  VA
Sbjct: 1087 VSRKLVKLMNGEVQYLREAGRSTFIISVELAVA 1119

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>PHYA_CUCPE (P06592) Phytochrome A|
          Length = 1124

 Score = 82.8 bits (203), Expect = 5e-16
 Identities = 40/93 (43%), Positives = 56/93 (60%)
 Frame = -1

Query: 509  PAEGPIVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFRHGPGVSREGLGLH 330
            P+ G + +     K  +G  + + HLEFR+ +   G+PE+L+ EMF      S EG  L 
Sbjct: 1026 PSGGQLTISTDVTKNQLGKSVHLVHLEFRITYAGGGIPESLLNEMFGSEEDASEEGFSLL 1085

Query: 329  ISQKLVKTMSGTVQYLREAESSSFIVLVEFPVA 231
            IS+KLVK M+G V+Y+REA  SSFI+ VE   A
Sbjct: 1086 ISRKLVKLMNGDVRYMREAGKSSFIITVELAAA 1118

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>PHYA_ARATH (P14712) Phytochrome A|
          Length = 1122

 Score = 82.4 bits (202), Expect = 6e-16
 Identities = 40/93 (43%), Positives = 58/93 (62%)
 Frame = -1

Query: 509  PAEGPIVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFRHGPGVSREGLGLH 330
            P+ G + +    +K+ +G  + +A+LE R+ H   G+PE L+ +MF     VS EGL L 
Sbjct: 1028 PSGGQLTVSASLRKDQLGRSVHLANLEIRLTHTGAGIPEFLLNQMFGTEEDVSEEGLSLM 1087

Query: 329  ISQKLVKTMSGTVQYLREAESSSFIVLVEFPVA 231
            +S+KLVK M+G VQYLR+A  SSFI+  E   A
Sbjct: 1088 VSRKLVKLMNGDVQYLRQAGKSSFIITAELAAA 1120

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>PHYA1_TOBAC (P33530) Phytochrome A1|
          Length = 1124

 Score = 81.3 bits (199), Expect = 1e-15
 Identities = 44/93 (47%), Positives = 58/93 (62%)
 Frame = -1

Query: 509  PAEGPIVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFRHGPGVSREGLGLH 330
            P+ G + +     K+ IG  +Q+A LE R+ H   GVPE L+ +MF      S EG+ L 
Sbjct: 1027 PSGGQLSISGTLTKDRIGESVQLALLEVRISHTGGGVPEELLSQMFGTEAEASEEGISLL 1086

Query: 329  ISQKLVKTMSGTVQYLREAESSSFIVLVEFPVA 231
            IS+KLVK M+G VQYLREA  S+FI+ VE  VA
Sbjct: 1087 ISRKLVKLMNGEVQYLREAGRSTFIISVELAVA 1119

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>PHYB_TOBAC (P29130) Phytochrome B|
          Length = 1132

 Score = 81.3 bits (199), Expect = 1e-15
 Identities = 33/92 (35%), Positives = 62/92 (67%)
 Frame = -1

Query: 503  EGPIVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFRHGPGVSREGLGLHIS 324
            +G + +Q+ P  + I   + + H+EFR+V P  G+P  L+Q+MF     V++EGLGL + 
Sbjct: 1034 DGWVEIQLQPNMKQISDEVTVVHIEFRIVCPGEGLPPELVQDMFHSSRWVTKEGLGLSMC 1093

Query: 323  QKLVKTMSGTVQYLREAESSSFIVLVEFPVAQ 228
            +K++K M+G +QY+RE+E   F+++++ P+ +
Sbjct: 1094 RKILKLMNGDIQYIRESERCYFLIILDLPMTR 1125

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>PHY_MOUSC (P33529) Phytochrome|
          Length = 1124

 Score = 80.1 bits (196), Expect = 3e-15
 Identities = 41/96 (42%), Positives = 62/96 (64%), Gaps = 2/96 (2%)
 Frame = -1

Query: 509  PAEGPIVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFRHGPG--VSREGLG 336
            P  G + ++V P  + +  G+ +A+++FRV HP  G+PE LI +MF        S+EGLG
Sbjct: 1021 PPSGWVEIKVEPVVKKLPGGVSVANVDFRVSHPGEGLPEDLIDQMFDRADARVKSQEGLG 1080

Query: 335  LHISQKLVKTMSGTVQYLREAESSSFIVLVEFPVAQ 228
            L I +KLV+ M+G VQY RE E + F++ +E P+AQ
Sbjct: 1081 LSICRKLVRLMNGEVQYRREGERNFFLLQLELPLAQ 1116

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>PHYA_PEA (P15001) Phytochrome A|
          Length = 1124

 Score = 80.1 bits (196), Expect = 3e-15
 Identities = 40/93 (43%), Positives = 57/93 (61%)
 Frame = -1

Query: 509  PAEGPIVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFRHGPGVSREGLGLH 330
            P  G +V+     KE +G  + + +LE  + H   GVPEA + +MF +    S EG+ LH
Sbjct: 1027 PNGGQVVIAASLTKEQLGKSVHLVNLELSITHGGSGVPEAALNQMFGNNVLESEEGISLH 1086

Query: 329  ISQKLVKTMSGTVQYLREAESSSFIVLVEFPVA 231
            IS+KL+K M+G V+YL+EA  SSFI+ VE   A
Sbjct: 1087 ISRKLLKLMNGDVRYLKEAGKSSFILSVELAAA 1119

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>PHYA_LATSA (P93673) Phytochrome type A|
          Length = 1124

 Score = 79.3 bits (194), Expect = 5e-15
 Identities = 40/93 (43%), Positives = 57/93 (61%)
 Frame = -1

Query: 509  PAEGPIVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFRHGPGVSREGLGLH 330
            P  G +V+     KE +G  + + +LE  + H   GVPEA + +MF +    S EG+ LH
Sbjct: 1027 PNGGQVVIASSLTKEQLGKSVHLVNLELSITHGGSGVPEAALNQMFGNNVLESEEGISLH 1086

Query: 329  ISQKLVKTMSGTVQYLREAESSSFIVLVEFPVA 231
            IS+KL+K M+G V+YL+EA  SSFI+ VE   A
Sbjct: 1087 ISRKLLKLMNGDVRYLKEAGKSSFILSVELAAA 1119

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>PHYB_SOLTU (P34094) Phytochrome B|
          Length = 1130

 Score = 79.3 bits (194), Expect = 5e-15
 Identities = 32/92 (34%), Positives = 61/92 (66%)
 Frame = -1

Query: 503  EGPIVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFRHGPGVSREGLGLHIS 324
            +G + +Q+ P    I  G+ + H+E R++ P  G+P  L+Q+MF     V++EGLGL + 
Sbjct: 1032 DGWVEIQLRPSMMPISDGVTVVHIELRIICPGEGLPPELVQDMFHSSRWVTQEGLGLSMC 1091

Query: 323  QKLVKTMSGTVQYLREAESSSFIVLVEFPVAQ 228
            +K++K M+G +QY+RE+E   F+++++ P+ +
Sbjct: 1092 RKMLKLMNGEIQYIRESERCYFLIILDLPMTR 1123

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>PHYB1_LYCES (Q9ZS62) Phytochrome B1|
          Length = 1131

 Score = 78.2 bits (191), Expect = 1e-14
 Identities = 32/92 (34%), Positives = 60/92 (65%)
 Frame = -1

Query: 503  EGPIVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFRHGPGVSREGLGLHIS 324
            +G + +Q+ P    I  G  + H+E R++ P  G+P  L+Q+MF     V++EGLGL + 
Sbjct: 1033 DGWVEIQLRPSMMPISDGATVVHIELRIICPGEGLPPELVQDMFHSSRWVTQEGLGLSMC 1092

Query: 323  QKLVKTMSGTVQYLREAESSSFIVLVEFPVAQ 228
            +K++K M+G +QY+RE+E   F+++++ P+ +
Sbjct: 1093 RKMLKLMNGEIQYIRESERCYFMIILDLPMTR 1124

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>PHYD_ARATH (P42497) Phytochrome D|
          Length = 1164

 Score = 77.8 bits (190), Expect = 2e-14
 Identities = 37/92 (40%), Positives = 53/92 (57%)
 Frame = -1

Query: 509  PAEGPIVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFRHGPGVSREGLGLH 330
            P EG + L + P    +  G     LEFR+     GVP   +Q+MF      S EGLGL 
Sbjct: 1064 PMEGSVELHLCPTLNQMADGFSAVRLEFRMACAGEGVPPEKVQDMFHSSRWTSPEGLGLS 1123

Query: 329  ISQKLVKTMSGTVQYLREAESSSFIVLVEFPV 234
            + +K++K M+G VQY+RE E S F++++E PV
Sbjct: 1124 VCRKILKLMNGGVQYIREFERSYFLIVIELPV 1155

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>PHYE_IPONI (P55004) Phytochrome E|
          Length = 1115

 Score = 71.6 bits (174), Expect = 1e-12
 Identities = 35/89 (39%), Positives = 58/89 (65%), Gaps = 1/89 (1%)
 Frame = -1

Query: 503  EGPIVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFRHGP-GVSREGLGLHI 327
            +G + ++V P  + I  G    H++FR+ HP  G+P ALI++M R G    ++EG+ LH+
Sbjct: 1010 DGWVEIRVSPGLKLIQDGNVFIHIQFRMTHPGQGLPSALIEDMVRGGTRWTTQEGVVLHL 1069

Query: 326  SQKLVKTMSGTVQYLREAESSSFIVLVEF 240
            SQKLV+ M+G V Y+RE +   F++ ++F
Sbjct: 1070 SQKLVRMMNGHVHYVREQQKCYFLIDLDF 1098

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>PHYB_ARATH (P14713) Phytochrome B|
          Length = 1172

 Score = 70.9 bits (172), Expect = 2e-12
 Identities = 32/92 (34%), Positives = 55/92 (59%)
 Frame = -1

Query: 509  PAEGPIVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFRHGPGVSREGLGLH 330
            P++  + + +    + +  G      EFR+  P  G+P  L+++MF      S EGLGL 
Sbjct: 1060 PSQEWVEIHLSQLSKQMADGFAAIRTEFRMACPGEGLPPELVRDMFHSSRWTSPEGLGLS 1119

Query: 329  ISQKLVKTMSGTVQYLREAESSSFIVLVEFPV 234
            + +K++K M+G VQY+RE+E S F++++E PV
Sbjct: 1120 VCRKILKLMNGEVQYIRESERSYFLIILELPV 1151

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>PHYA_SOYBN (P42500) Phytochrome A|
          Length = 1131

 Score = 69.7 bits (169), Expect = 4e-12
 Identities = 37/93 (39%), Positives = 52/93 (55%)
 Frame = -1

Query: 509  PAEGPIVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFRHGPGVSREGLGLH 330
            P  G +V+     KE +G  + +  LE  + H   GVPE L+ +MF +    S EG+ L 
Sbjct: 1034 PNGGQVVVAGSLTKEQLGKSVHLVKLELSITHGGSGVPEVLLNQMFGNNGLESEEGISLL 1093

Query: 329  ISQKLVKTMSGTVQYLREAESSSFIVLVEFPVA 231
            I  KL+K M+G V+YLREA  S+FI+  E   A
Sbjct: 1094 IRAKLLKLMNGDVRYLREAGKSAFILSAELAAA 1126

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>PHYB_ORYSA (P25764) Phytochrome B|
          Length = 1171

 Score = 68.9 bits (167), Expect = 7e-12
 Identities = 36/95 (37%), Positives = 55/95 (57%), Gaps = 1/95 (1%)
 Frame = -1

Query: 509  PAE-GPIVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFRHGPGVSREGLGL 333
            PAE G + +QV P  +    G       FR   P  G+P  ++Q+MF +    ++EG+GL
Sbjct: 1069 PAENGWVEIQVRPNIKQNSDGTDTMLFPFRFACPGEGLPPEIVQDMFSNSRWTTQEGIGL 1128

Query: 332  HISQKLVKTMSGTVQYLREAESSSFIVLVEFPVAQ 228
             I +K++K M G VQY+RE+E S F +++E P  Q
Sbjct: 1129 SICRKILKLMGGEVQYIRESERSFFHIVLELPQPQ 1163

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>PHYB_SORBI (P93527) Phytochrome B|
          Length = 1178

 Score = 67.4 bits (163), Expect = 2e-11
 Identities = 33/92 (35%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
 Frame = -1

Query: 509  PAE-GPIVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFRHGPGVSREGLGL 333
            P+E G + +QV P  +    G       FR  +P  G+P  ++Q+MF +    ++EG+GL
Sbjct: 1076 PSENGWVEIQVRPNVKQNSDGTDTELFIFRFTYPGEGLPADIVQDMFSNSQWSTQEGVGL 1135

Query: 332  HISQKLVKTMSGTVQYLREAESSSFIVLVEFP 237
               +K++K M G VQY+RE+E S F++++E P
Sbjct: 1136 STCRKILKLMGGEVQYIRESERSFFLIVLELP 1167

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>PHY_ADICA (P42496) Phytochrome 1|
          Length = 1118

 Score = 67.0 bits (162), Expect = 3e-11
 Identities = 30/88 (34%), Positives = 52/88 (59%)
 Frame = -1

Query: 494  IVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFRHGPGVSREGLGLHISQKL 315
            + ++V   K  +  G+ + H EFR+ H   G+ EAL++EM       + EGL + IS  L
Sbjct: 1022 VTIKVSRTKTRLDDGVHLMHFEFRISHSGQGISEALVEEMTNKSQKWTPEGLAISISCTL 1081

Query: 314  VKTMSGTVQYLREAESSSFIVLVEFPVA 231
            ++ M+G V+Y  +A +  F+V ++FP+A
Sbjct: 1082 IRLMNGDVKYTTDAGNKCFLVTIQFPLA 1109

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>PHYA_POPTM (O49934) Phytochrome A|
          Length = 1125

 Score = 66.2 bits (160), Expect = 5e-11
 Identities = 32/63 (50%), Positives = 44/63 (69%)
 Frame = -1

Query: 431  EFRVVHPAPGVPEALIQEMFRHGPGVSREGLGLHISQKLVKTMSGTVQYLREAESSSFIV 252
            + R+ H   G+PEAL+ +M+    G S EG+ L IS+KLVK M+G V+Y+REA  SSFI+
Sbjct: 1052 KLRIRHLGAGIPEALVDQMYGEDTGASVEGISLVISRKLVKLMNGDVRYMREAGKSSFII 1111

Query: 251  LVE 243
             VE
Sbjct: 1112 SVE 1114

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>PHYA4_AVESA (P06594) Phytochrome A type 4 (AP4)|
          Length = 1128

 Score = 63.5 bits (153), Expect = 3e-10
 Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
 Frame = -1

Query: 509  PAEGPIVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFRH-GPGVSREGLGL 333
            P  G + +     K  IG  + +  LE R+ H   GVP  L+++MF       S EGLGL
Sbjct: 1029 PVGGSVEISSKLTKNSIGENLHLIDLELRIKHQGLGVPAELMEQMFEEDNKEQSDEGLGL 1088

Query: 332  HISQKLVKTMSGTVQYLREAESSSFIVLVEFPVA 231
             +S+KL++ M+G V++LREA  S+FI+  E   A
Sbjct: 1089 LVSRKLLRLMNGDVRHLREAGVSTFILTAELASA 1122

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>PHYE_ARATH (P42498) Phytochrome E|
          Length = 1112

 Score = 60.5 bits (145), Expect = 3e-09
 Identities = 30/80 (37%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
 Frame = -1

Query: 488  LQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFRHGPG-VSREGLGLHISQKLV 312
            + + P +E      +  HL+FR++HP  G+P  ++ +MF    G V+ +GLGL +S+KL+
Sbjct: 1011 ISISPGQELSRDNGRYIHLQFRMIHPGKGLPSEMLSDMFETRDGWVTPDGLGLKLSRKLL 1070

Query: 311  KTMSGTVQYLREAESSSFIV 252
            + M+G V Y+RE E   F V
Sbjct: 1071 EQMNGRVSYVREDERCFFQV 1090

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>PHYA3_AVESA (P06593) Phytochrome A type 3 (AP3)|
          Length = 1128

 Score = 59.7 bits (143), Expect = 4e-09
 Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
 Frame = -1

Query: 509  PAEGPIVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFRH-GPGVSREGLGL 333
            P  G + +     K  IG  + +  LE R+ H   GVP  L+ +MF       S EGL L
Sbjct: 1029 PVGGSVEISSKLTKNSIGENLHLIDLELRIKHQGLGVPAELMAQMFEEDNKEQSEEGLSL 1088

Query: 332  HISQKLVKTMSGTVQYLREAESSSFIVLVEFPVA 231
             +S+ L++ M+G V++LREA  S+FI+  E   A
Sbjct: 1089 LVSRNLLRLMNGDVRHLREAGVSTFIITAELASA 1122

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>PHYA_ORYSA (P10931) Phytochrome A|
          Length = 1128

 Score = 58.9 bits (141), Expect = 8e-09
 Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
 Frame = -1

Query: 509  PAEGPIVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFRH-GPGVSREGLGL 333
            P  G + +     K  IG  + +  LE R+ H   GVP  L+ +M+       S EG+ L
Sbjct: 1032 PVGGSVEISCSLTKNSIGENLHLIDLELRIKHQGKGVPADLLSQMYEDDNKEQSDEGMSL 1091

Query: 332  HISQKLVKTMSGTVQYLREAESSSFIVLVEFPVA 231
             +S+ L++ M+G V+++REA  S+FI+ VE   A
Sbjct: 1092 AVSRNLLRLMNGDVRHMREAGMSTFILSVELASA 1125

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>PHYA1_MAIZE (P19862) Phytochrome A|
          Length = 1131

 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
 Frame = -1

Query: 509  PAEGPIVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFRH-GPGVSREGLGL 333
            PA G + +     K  IG  + +   E R+ H   GVP  ++ +M+       S EG  L
Sbjct: 1032 PAGGSVDISSKLTKNSIGENLHLIDFELRIKHRGAGVPAEILSQMYEEDNKEQSEEGFSL 1091

Query: 332  HISQKLVKTMSGTVQYLREAESSSFIVLVEFPVA 231
             +S+ L++ M+G +++LREA  S+FI+  E   A
Sbjct: 1092 AVSRNLLRLMNGDIRHLREAGMSTFILTAELAAA 1125

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>PHYA_SORBI (P93526) Phytochrome a|
          Length = 1131

 Score = 57.0 bits (136), Expect = 3e-08
 Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
 Frame = -1

Query: 509  PAEGPIVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFRH-GPGVSREGLGL 333
            P  G + +     K  IG  + +   E R+ H   GVP  ++ +M+       S EGL L
Sbjct: 1032 PVGGSVDISSKLTKNSIGENLHLIDFELRIKHQGAGVPAEILSQMYEEDNKEPSEEGLSL 1091

Query: 332  HISQKLVKTMSGTVQYLREAESSSFIVLVEFPVA 231
             +S+ L++ M+G ++++REA  S+FI+  E   A
Sbjct: 1092 LVSRNLLRLMNGNIRHIREAGMSTFILTAELAAA 1125

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>BVGS_BORPA (P40330) Virulence sensor protein bvgS precursor (EC 2.7.13.3)|
          Length = 1238

 Score = 35.0 bits (79), Expect = 0.12
 Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 10/103 (9%)
 Frame = -1

Query: 503  EGPIVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFRH----------GPGV 354
            EG +VL V  + +      + AH++F V     G+ EA  +++F+           GP  
Sbjct: 854  EGQVVLTVTARPDG-----EAAHVQFSVSDTGCGISEADQRQLFKPFSQVGGSAEAGPAP 908

Query: 353  SREGLGLHISQKLVKTMSGTVQYLREAESSSFIVLVEFPVAQL 225
               GLGL IS++LV+ M GT+  +R A      V V+  +  +
Sbjct: 909  GT-GLGLSISRRLVELMGGTL-VMRSAPGVGTTVSVDLRLTMI 949

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>BVGS_BORBR (P26762) Virulence sensor protein bvgS precursor (EC 2.7.13.3)|
          Length = 1238

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 10/81 (12%)
 Frame = -1

Query: 503  EGPIVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFRH----------GPGV 354
            EG +VL V  + +      + AH++F V     G+ EA  +++F+           GP  
Sbjct: 854  EGQVVLTVTARPDG-----EAAHVQFSVSDTGCGISEADQRQLFKPFSQVGGSAEAGPAP 908

Query: 353  SREGLGLHISQKLVKTMSGTV 291
               GLGL IS++LV+ M GT+
Sbjct: 909  GT-GLGLSISRRLVELMGGTL 928

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>BVGS_BORPE (P16575) Virulence sensor protein bvgS precursor (EC 2.7.13.3)|
          Length = 1238

 Score = 33.9 bits (76), Expect = 0.26
 Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
 Frame = -1

Query: 503  EGPIVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFRH----------GPGV 354
            EG +VL V  + +        AH++F V     G+ EA  +++F+           GP  
Sbjct: 854  EGQVVLAVTARPDG-----DAAHVQFSVSDTGCGISEADQRQLFKPFSQVGGSAEAGPAP 908

Query: 353  SREGLGLHISQKLVKTMSGTV 291
               GLGL IS++LV+ M GT+
Sbjct: 909  GT-GLGLSISRRLVELMGGTL 928

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>TCSB_EMENI (Q9P4U6) Two-component system protein B precursor (EC 2.7.13.3)|
           (NHK1 protein) (SLN1 homolog)
          Length = 1070

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
 Frame = -1

Query: 434 LEFRVVHPAPGVPEALIQEMF--------RHGPGVSREGLGLHISQKLVKTMSGTVQYLR 279
           L+F V    PG+P+ L   +F        R        GLGL I  +L + M G +Q L 
Sbjct: 774 LQFEVEDTGPGIPQHLQNRVFEPFVQGDLRLNRKYGGTGLGLSICSQLARLMRGQIQ-LN 832

Query: 278 EAESSSFIVLVEFPV 234
             +    + LV  P+
Sbjct: 833 SEQGRGTLFLVRIPL 847

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>TMPSD_HUMAN (Q9BYE2) Transmembrane protease, serine 13 (EC 3.4.21.-) (Mosaic|
           serine protease) (Membrane-type mosaic serine protease)
          Length = 581

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +2

Query: 233 PPGTPPER*TRSSLLPGGTVPCRSSSSRAS 322
           P GTPP R + +   P GT P R+S  RAS
Sbjct: 46  PAGTPPGRASPAQASPAGTPPGRASPGRAS 75

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>RCSC_ECOLI (P14376) Sensor kinase protein rcsC (EC 2.7.13.3) (Capsular|
           synthesis regulator component C)
          Length = 949

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 26/79 (32%), Positives = 33/79 (41%), Gaps = 9/79 (11%)
 Frame = -1

Query: 437 HLEFRVVHPAPGVPEA----LIQEMFRHGPGVSRE----GLGLHISQKLVKTMSGTVQYL 282
           +L  RV     G+P      L    F+ G GV R     GLGL I +KL+  M G +   
Sbjct: 616 YLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVD 675

Query: 281 RE-AESSSFIVLVEFPVAQ 228
            E    S F V +    AQ
Sbjct: 676 SEPGMGSQFTVRIPLYGAQ 694

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>RCSC_SALTY (P58662) Sensor protein rcsC (EC 2.7.13.3) (Capsular synthesis|
           regulator component C)
          Length = 948

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 8/57 (14%)
 Frame = -1

Query: 437 HLEFRVVHPAPGVPEA----LIQEMFRHGPGVSRE----GLGLHISQKLVKTMSGTV 291
           +L  RV     G+P      L    F+ G GV R     GLGL I +KL+  M G +
Sbjct: 616 YLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDI 672

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>RCSC_SALTI (Q56128) Sensor protein rcsC (EC 2.7.13.3) (Capsular synthesis|
           regulator component C)
          Length = 948

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 8/57 (14%)
 Frame = -1

Query: 437 HLEFRVVHPAPGVPEA----LIQEMFRHGPGVSRE----GLGLHISQKLVKTMSGTV 291
           +L  RV     G+P      L    F+ G GV R     GLGL I +KL+  M G +
Sbjct: 616 YLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDI 672

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>BIO5_YEAST (P53744) 7-keto 8-aminopelargonic acid transported (KAPA|
           transporter)
          Length = 561

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 16/64 (25%), Positives = 29/64 (45%)
 Frame = +1

Query: 301 LIVFTSFWLMCRPRPSRDTPGPWRNISCISASGTPGAGWTTLNSR*AICMPEPMCSFLGM 480
           L+ F   +++C    S +T  PW   S I  S     GW +      + +  P+ +F+G+
Sbjct: 240 LLSFAMTFIICIVSRSDNTVDPWPKASNIFGSFDNQTGWNSSGMAFVVGLVNPIWAFVGI 299

Query: 481 TWST 492
             +T
Sbjct: 300 DSAT 303

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>NTRB_BRASR (P10578) Nitrogen regulation protein ntrB (EC 2.7.13.3)|
          Length = 377

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
 Frame = -1

Query: 434 LEFRVVHPAPGVPEALIQEMFRHGPGVSRE----GLGLHISQKLVKTMSGTVQYLREAES 267
           LEF V     GVPE L+  +F   P V+ +    GLGL +  K+V    G ++   +   
Sbjct: 298 LEFCVKDNGSGVPEDLLPNLF--DPFVTTKQTGSGLGLALVAKIVGDHGGIIECESQPRK 355

Query: 266 SSFIVL 249
           ++F VL
Sbjct: 356 TTFRVL 361

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>PAG_BACAN (P13423) Protective antigen precursor (PA) (PA-83) (PA83) (Anthrax|
           toxins translocating protein) [Contains: Protective
           antigen PA-20 (PA20); Protective antigen PA-63 (PA63)]
          Length = 764

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = -1

Query: 410 APGVPEALIQEMFRHGPGVSREGLGLHISQKLVKTMSGTVQYLREAESSSFIV 252
           A G  E++++E  R     S EGL L+I + + K +SG +  + + E    ++
Sbjct: 633 AVGADESVVKEAHREVINSSTEGLLLNIDKDIRKILSGYIVEIEDTEGLKEVI 685

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>G11A_ORYSA (P47997) Protein kinase G11A (EC 2.7.11.1)|
          Length = 589

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
 Frame = +1

Query: 169 LLVEGFDHLLVEGFDLLLLSCATGNSTRTMNEELSASRR----YCTVPLIVFTSFWLMCR 336
           +LV    H+++  FDL L    +    R+ N +  A R+    YC  P  V  S    C 
Sbjct: 326 VLVREDGHIMLSDFDLSLRCAVSPTLIRSSNPDAEALRKNNQAYCVQPACVEPS----CM 381

Query: 337 PRPSRDTP 360
            +PS  TP
Sbjct: 382 IQPSCATP 389

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>HIS6_IDILO (Q5QWQ5) Imidazole glycerol phosphate synthase subunit hisF (EC|
           4.1.3.-) (IGP synthase cyclase subunit) (IGP synthase
           subunit hisF) (ImGP synthase subunit hisF) (IGPS subunit
           hisF)
          Length = 265

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = +1

Query: 106 IHQLSSSSNPTNDPGWIQKLLLLVEGFDHLLVEGFDLLLLSCATGNSTRTMNE--ELSAS 279
           +HQ +   + ++   W  K     +    ++  G   ++L+C   +  R   +  +LSA 
Sbjct: 142 VHQFTGDESKSHKSAWQTK-----DWLQEVISRGAGEIVLNCMNQDGVRQGYDIAQLSAL 196

Query: 280 RRYCTVPLI 306
           R +C+VPLI
Sbjct: 197 RGHCSVPLI 205


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,400,754
Number of Sequences: 219361
Number of extensions: 1487653
Number of successful extensions: 4601
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 4466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4590
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3754426130
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result