>dbj|AB164396.1| Hordeum vulgare HvMS mRNA for methionine synthase, complete cds
          Length = 2558

 Score =  135 bits (68), Expect = 2e-29
 Identities = 74/77 (96%)
 Strand = Plus / Minus

                                                                        
Query: 1    ggagagctgctatacgagcactgcttactgcgccttggngagctcggcgcggatctgctn 60
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| 
Sbjct: 2330 ggagagctgctatacgagcactgcttactgcgccttggcgagctcggcgcggatctgctt 2271

                             
Query: 61   ggcggcctcnaccatgt 77
            ||||||||| |||||||
Sbjct: 2270 ggcggcctcgaccatgt 2254

>emb|AM039904.1| Hordeum vulgare mRNA for methionine synthase 1 enzyme (ms1 gene)
          Length = 2642

 Score =  127 bits (64), Expect = 4e-27
 Identities = 73/77 (94%)
 Strand = Plus / Minus

                                                                        
Query: 1    ggagagctgctatacgagcactgcttactgcgccttggngagctcggcgcggatctgctn 60
            |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| 
Sbjct: 2375 ggagagctgctatacgagcactgcttactgcgccttggcgagctcggcgcggatttgctt 2316

                             
Query: 61   ggcggcctcnaccatgt 77
            ||||||||| |||||||
Sbjct: 2315 ggcggcctcgaccatgt 2299

>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 0.79
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 42      gctcggcgcggatctgctnggcg 64
               |||||||||||||||||| ||||
Sbjct: 1519477 gctcggcgcggatctgctcggcg 1519455

>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 40.1 bits (20), Expect = 0.79
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 42      gctcggcgcggatctgctnggcg 64
               |||||||||||||||||| ||||
Sbjct: 2854223 gctcggcgcggatctgctcggcg 2854201

>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 40.1 bits (20), Expect = 0.79
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 42     gctcggcgcggatctgctnggcg 64
              |||||||||||||||||| ||||
Sbjct: 384047 gctcggcgcggatctgctcggcg 384069

>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 40.1 bits (20), Expect = 0.79
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 42     gctcggcgcggatctgctnggcg 64
              |||||||||||||||||| ||||
Sbjct: 305837 gctcggcgcggatctgctcggcg 305859

>gb|AE005685.1| Caulobacter crescentus CB15 section 11 of 359 of the complete genome
          Length = 10290

 Score = 38.2 bits (19), Expect = 3.1
 Identities = 24/26 (92%)
 Strand = Plus / Minus

                                      
Query: 32   gccttggngagctcggcgcggatctg 57
            ||||||| |||| |||||||||||||
Sbjct: 5575 gccttggagagcgcggcgcggatctg 5550

>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 38.2 bits (19), Expect = 3.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 41      agctcggcgcggatctgct 59
               |||||||||||||||||||
Sbjct: 3657858 agctcggcgcggatctgct 3657840

>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 38.2 bits (19), Expect = 3.1
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                     
Query: 28      ctgcgccttggngagctcggcg 49
               ||||||||||| ||||||||||
Sbjct: 4560289 ctgcgccttggtgagctcggcg 4560268

>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 38.2 bits (19), Expect = 3.1
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                     
Query: 28      ctgcgccttggngagctcggcg 49
               ||||||||||| ||||||||||
Sbjct: 7260848 ctgcgccttggtgagctcggcg 7260869


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 172,546
Number of Sequences: 3902068
Number of extensions: 172546
Number of successful extensions: 9835
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9615
Number of HSP's gapped (non-prelim): 220
length of query: 77
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 56
effective length of database: 17,151,101,840
effective search space: 960461703040
effective search space used: 960461703040
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)