ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags3n14
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_189772.1| Oryza sativa (japonica cultivar-group), predic... 222 8e-55
2dbj|AK070047.1| Oryza sativa (japonica cultivar-group) cDNA clon... 222 8e-55
3dbj|AK067525.1| Oryza sativa (japonica cultivar-group) cDNA clon... 222 8e-55
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 151 2e-33
5dbj|AP003683.3| Oryza sativa (japonica cultivar-group) genomic D... 151 2e-33
6gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete... 50 0.007
7emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 42 1.6
8ref|XM_470606.1| Oryza sativa (japonica cultivar-group), predic... 40 6.4
9gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome 40 6.4
10gb|AC104645.8| Homo sapiens chromosome 3 clone CTD-2011M13, comp... 40 6.4
11gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 6.4
12emb|AL157788.16| Human DNA sequence from clone RP11-498J9 on chr... 40 6.4
13emb|CR555306.1| Azoarcus sp. EbN1 complete genome 40 6.4
14gb|AC011558.6| Homo sapiens chromosome 19 clone LLNLR-291F12, co... 40 6.4
15dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
16gb|AC105927.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.4
17gb|AC135157.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.4
18gb|AC004528.1|AC004528 Homo sapiens chromosome 19, cosmid R32184... 40 6.4
19emb|AL669913.15| Mouse DNA sequence from clone RP23-479C2 on chr... 40 6.4 
>ref|NM_189772.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3348

 Score =  222 bits (112), Expect = 8e-55
 Identities = 229/267 (85%), Gaps = 1/267 (0%)
 Strand = Plus / Minus

                                                                        
Query: 206  gggtagctgggagatgtagatgtcgtggcacgacgacnacggcagcaggggccgcagccg 265
            ||||||||| |||  ||||||||| |||||||||||| |||||||||  || | ||||| 
Sbjct: 3342 gggtagctgagagtggtagatgtcatggcacgacgacgacggcagcaacgggcacagcct 3283

                                                                        
Query: 266  cagcgagaacctgtagctcgccggcggcagcaggtactcctcatgcacgcacggcgtcca 325
            || ||||||   ||| |||||||||||||||| ||||| ||| ||||||||||||| |||
Sbjct: 3282 caccgagaaggcgtatctcgccggcggcagcaagtactgctcgtgcacgcacggcgacca 3223

                                                                        
Query: 326  gctgtcgtccccgcccacccccatgtgcctatgatcaagatgcacctcgatgtcatctcc 385
            |||||||||||| |||| |||||||||| | ||||||||||||||||||||||| |||||
Sbjct: 3222 gctgtcgtcccctcccagccccatgtgcttgtgatcaagatgcacctcgatgtcgtctcc 3163

                                                                        
Query: 386  cttggtcagcttgtgctgatgggtcgcccggtcgagctccacggagcccgtaatagctgg 445
            ||||   |||||||| | ||| ||||| |||||||||||| ||| | || || |||||||
Sbjct: 3162 cttgacgagcttgtggttatgcgtcgcgcggtcgagctccgcggcg-ccatagtagctgg 3104

                                       
Query: 446  cgctcgcctgcatcggcggggactcgc 472
            ||||| ||||||||||||| |||||||
Sbjct: 3103 cgctcacctgcatcggcggcgactcgc 3077
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>dbj|AK070047.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023038J20, full
            insert sequence
          Length = 3913

 Score =  222 bits (112), Expect = 8e-55
 Identities = 229/267 (85%), Gaps = 1/267 (0%)
 Strand = Plus / Minus

                                                                        
Query: 206  gggtagctgggagatgtagatgtcgtggcacgacgacnacggcagcaggggccgcagccg 265
            ||||||||| |||  ||||||||| |||||||||||| |||||||||  || | ||||| 
Sbjct: 3516 gggtagctgagagtggtagatgtcatggcacgacgacgacggcagcaacgggcacagcct 3457

                                                                        
Query: 266  cagcgagaacctgtagctcgccggcggcagcaggtactcctcatgcacgcacggcgtcca 325
            || ||||||   ||| |||||||||||||||| ||||| ||| ||||||||||||| |||
Sbjct: 3456 caccgagaaggcgtatctcgccggcggcagcaagtactgctcgtgcacgcacggcgacca 3397

                                                                        
Query: 326  gctgtcgtccccgcccacccccatgtgcctatgatcaagatgcacctcgatgtcatctcc 385
            |||||||||||| |||| |||||||||| | ||||||||||||||||||||||| |||||
Sbjct: 3396 gctgtcgtcccctcccagccccatgtgcttgtgatcaagatgcacctcgatgtcgtctcc 3337

                                                                        
Query: 386  cttggtcagcttgtgctgatgggtcgcccggtcgagctccacggagcccgtaatagctgg 445
            ||||   |||||||| | ||| ||||| |||||||||||| ||| | || || |||||||
Sbjct: 3336 cttgacgagcttgtggttatgcgtcgcgcggtcgagctccgcggcg-ccatagtagctgg 3278

                                       
Query: 446  cgctcgcctgcatcggcggggactcgc 472
            ||||| ||||||||||||| |||||||
Sbjct: 3277 cgctcacctgcatcggcggcgactcgc 3251
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>dbj|AK067525.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013108P17, full
            insert sequence
          Length = 3268

 Score =  222 bits (112), Expect = 8e-55
 Identities = 229/267 (85%), Gaps = 1/267 (0%)
 Strand = Plus / Minus

                                                                        
Query: 206  gggtagctgggagatgtagatgtcgtggcacgacgacnacggcagcaggggccgcagccg 265
            ||||||||| |||  ||||||||| |||||||||||| |||||||||  || | ||||| 
Sbjct: 3079 gggtagctgagagtggtagatgtcatggcacgacgacgacggcagcaacgggcacagcct 3020

                                                                        
Query: 266  cagcgagaacctgtagctcgccggcggcagcaggtactcctcatgcacgcacggcgtcca 325
            || ||||||   ||| |||||||||||||||| ||||| ||| ||||||||||||| |||
Sbjct: 3019 caccgagaaggcgtatctcgccggcggcagcaagtactgctcgtgcacgcacggcgacca 2960

                                                                        
Query: 326  gctgtcgtccccgcccacccccatgtgcctatgatcaagatgcacctcgatgtcatctcc 385
            |||||||||||| |||| |||||||||| | ||||||||||||||||||||||| |||||
Sbjct: 2959 gctgtcgtcccctcccagccccatgtgcttgtgatcaagatgcacctcgatgtcgtctcc 2900

                                                                        
Query: 386  cttggtcagcttgtgctgatgggtcgcccggtcgagctccacggagcccgtaatagctgg 445
            ||||   |||||||| | ||| ||||| |||||||||||| ||| | || || |||||||
Sbjct: 2899 cttgacgagcttgtggttatgcgtcgcgcggtcgagctccgcggcg-ccatagtagctgg 2841

                                       
Query: 446  cgctcgcctgcatcggcggggactcgc 472
            ||||| ||||||||||||| |||||||
Sbjct: 2840 cgctcacctgcatcggcggcgactcgc 2814
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  151 bits (76), Expect = 2e-33
 Identities = 144/167 (86%)
 Strand = Plus / Minus

                                                                            
Query: 206      gggtagctgggagatgtagatgtcgtggcacgacgacnacggcagcaggggccgcagccg 265
                ||||||||| |||  ||||||||| |||||||||||| |||||||||  || | ||||| 
Sbjct: 41954747 gggtagctgagagtggtagatgtcatggcacgacgacgacggcagcaacgggcacagcct 41954688

                                                                            
Query: 266      cagcgagaacctgtagctcgccggcggcagcaggtactcctcatgcacgcacggcgtcca 325
                || ||||||   ||| |||||||||||||||| ||||| ||| ||||||||||||| |||
Sbjct: 41954687 caccgagaaggcgtatctcgccggcggcagcaagtactgctcgtgcacgcacggcgacca 41954628

                                                               
Query: 326      gctgtcgtccccgcccacccccatgtgcctatgatcaagatgcacct 372
                |||||||||||| |||| |||||||||| | ||||||||||||||||
Sbjct: 41954627 gctgtcgtcccctcccagccccatgtgcttgtgatcaagatgcacct 41954581



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 90/105 (85%), Gaps = 1/105 (0%)
 Strand = Plus / Minus

                                                                            
Query: 368      cacctcgatgtcatctcccttggtcagcttgtgctgatgggtcgcccggtcgagctccac 427
                |||||||||||| |||||||||   |||||||| | ||| ||||| |||||||||||| |
Sbjct: 41954437 cacctcgatgtcgtctcccttgacgagcttgtggttatgcgtcgcgcggtcgagctccgc 41954378

                                                             
Query: 428      ggagcccgtaatagctggcgctcgcctgcatcggcggggactcgc 472
                || | || || |||||||||||| ||||||||||||| |||||||
Sbjct: 41954377 ggcg-ccatagtagctggcgctcacctgcatcggcggcgactcgc 41954334
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>dbj|AP003683.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0431G06
          Length = 140466

 Score =  151 bits (76), Expect = 2e-33
 Identities = 144/167 (86%)
 Strand = Plus / Minus

                                                                         
Query: 206   gggtagctgggagatgtagatgtcgtggcacgacgacnacggcagcaggggccgcagccg 265
             ||||||||| |||  ||||||||| |||||||||||| |||||||||  || | ||||| 
Sbjct: 56824 gggtagctgagagtggtagatgtcatggcacgacgacgacggcagcaacgggcacagcct 56765

                                                                         
Query: 266   cagcgagaacctgtagctcgccggcggcagcaggtactcctcatgcacgcacggcgtcca 325
             || ||||||   ||| |||||||||||||||| ||||| ||| ||||||||||||| |||
Sbjct: 56764 caccgagaaggcgtatctcgccggcggcagcaagtactgctcgtgcacgcacggcgacca 56705

                                                            
Query: 326   gctgtcgtccccgcccacccccatgtgcctatgatcaagatgcacct 372
             |||||||||||| |||| |||||||||| | ||||||||||||||||
Sbjct: 56704 gctgtcgtcccctcccagccccatgtgcttgtgatcaagatgcacct 56658



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 90/105 (85%), Gaps = 1/105 (0%)
 Strand = Plus / Minus

                                                                         
Query: 368   cacctcgatgtcatctcccttggtcagcttgtgctgatgggtcgcccggtcgagctccac 427
             |||||||||||| |||||||||   |||||||| | ||| ||||| |||||||||||| |
Sbjct: 56514 cacctcgatgtcgtctcccttgacgagcttgtggttatgcgtcgcgcggtcgagctccgc 56455

                                                          
Query: 428   ggagcccgtaatagctggcgctcgcctgcatcggcggggactcgc 472
             || | || || |||||||||||| ||||||||||||| |||||||
Sbjct: 56454 ggcg-ccatagtagctggcgctcacctgcatcggcggcgactcgc 56411
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>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                       
Query: 245    cggcagcaggggccgcagccgcagc 269
              |||||||||||||||||||||||||
Sbjct: 575874 cggcagcaggggccgcagccgcagc 575898
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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 445    gcgctcgcctgcatcggcggggact 469
              ||||||||||||||||||| |||||
Sbjct: 817328 gcgctcgcctgcatcggcgcggact 817352
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>ref|XM_470606.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1080

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 370 cctcgatgtcatctcccttg 389
           ||||||||||||||||||||
Sbjct: 344 cctcgatgtcatctcccttg 363
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>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome
          Length = 2467205

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 249     agcaggggccgcagccgcag 268
               ||||||||||||||||||||
Sbjct: 2202913 agcaggggccgcagccgcag 2202894
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>gb|AC104645.8| Homo sapiens chromosome 3 clone CTD-2011M13, complete sequence
          Length = 153595

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 130   caatgatttccctctcacat 149
             ||||||||||||||||||||
Sbjct: 89092 caatgatttccctctcacat 89073
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 370     cctcgatgtcatctcccttg 389
               ||||||||||||||||||||
Sbjct: 6846025 cctcgatgtcatctcccttg 6846006
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>emb|AL157788.16| Human DNA sequence from clone RP11-498J9 on chromosome 10 Contains a
             pseudogene similar to part of lactate dehydrogenase A
             (LDH1) (LDHD), two novel genes, the NANOS1 gene for nanos
             homolog 1 (Drosophila) and one CpG island, complete
             sequence
          Length = 119104

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 293   cagcaggtactcctcatgca 312
             ||||||||||||||||||||
Sbjct: 61669 cagcaggtactcctcatgca 61688
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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 234     cacgacgacnacggcagcagggg 256
               ||||||||| |||||||||||||
Sbjct: 4237221 cacgacgacgacggcagcagggg 4237199
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>gb|AC011558.6| Homo sapiens chromosome 19 clone LLNLR-291F12, complete sequence
          Length = 43128

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 328 tgtcgtccccgcccaccccc 347
           ||||||||||||||||||||
Sbjct: 784 tgtcgtccccgcccaccccc 803
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 370     cctcgatgtcatctcccttg 389
               ||||||||||||||||||||
Sbjct: 6843922 cctcgatgtcatctcccttg 6843903
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>gb|AC105927.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1781E12,
             complete sequence
          Length = 120392

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 370   cctcgatgtcatctcccttg 389
             ||||||||||||||||||||
Sbjct: 41960 cctcgatgtcatctcccttg 41941
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>gb|AC135157.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1017C11,
             complete sequence
          Length = 166072

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 370   cctcgatgtcatctcccttg 389
             ||||||||||||||||||||
Sbjct: 12622 cctcgatgtcatctcccttg 12603
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>gb|AC004528.1|AC004528 Homo sapiens chromosome 19, cosmid R32184, complete sequence
          Length = 47066

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 328   tgtcgtccccgcccaccccc 347
             ||||||||||||||||||||
Sbjct: 45945 tgtcgtccccgcccaccccc 45964
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>emb|AL669913.15| Mouse DNA sequence from clone RP23-479C2 on chromosome 2, complete
             sequence
          Length = 184221

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 328   tgtcgtccccgcccacccccatgtgcct 355
             |||||||||| ||| |||||||||||||
Sbjct: 83292 tgtcgtccccccccccccccatgtgcct 83319


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,894,127
Number of Sequences: 3902068
Number of extensions: 2894127
Number of successful extensions: 55799
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55535
Number of HSP's gapped (non-prelim): 259
length of query: 472
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 450
effective length of database: 17,147,199,772
effective search space: 7716239897400
effective search space used: 7716239897400
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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