ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags3n10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC137923.4| Oryza sativa (japonica cultivar-group) chromosome... 101 2e-18
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 101 2e-18
3gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 101 2e-18
4dbj|AK065367.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 5e-16
5ref|XM_469944.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.027
6gb|AC090871.11| Oryza sativa chromosome 3 BAC OSJNBb0060J21 geno... 48 0.027
7gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 48 0.027
8dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.027
9dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.027
10dbj|AP003622.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.027
11dbj|AK103914.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.027
12dbj|AK100700.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.027
13dbj|AK071881.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.027
14gb|BT018940.1| Zea mays clone Contig86.F mRNA sequence 42 1.6
15emb|CT025636.2| Pan troglodytes chromosome X clone RP43-029M22 m... 42 1.6
16emb|BX936460.6| Zebrafish DNA sequence from clone CH211-69N2 in ... 42 1.6
17emb|AL603839.9| Human DNA sequence from clone RP11-656D10 on chr... 42 1.6
18gb|AC165083.2| Mus musculus BAC clone RP23-411I6 from chromosome... 42 1.6
19gb|AC099036.1| Drosophila melanogaster, chromosome 2R, region 59... 42 1.6
20gb|BC053462.1| Mus musculus F-box protein 38, mRNA (cDNA clone I... 42 1.6
21gb|AY109100.1| Zea mays PCO081548 mRNA sequence 42 1.6
22gb|AE003459.3| Drosophila melanogaster chromosome 2R, section 67... 42 1.6
23gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, ... 40 6.5
24gb|AC150389.2| Branchiostoma floridae clone CH302-114C5, complet... 40 6.5
25gb|AC165143.3| Mus musculus BAC clone RP24-391N16 from chromosom... 40 6.5
26emb|Z78200.1|CET04H1 Caenorhabditis elegans Cosmid T04H1, comple... 40 6.5
27ref|XM_762959.1| Giardia lamblia ATCC 50803 hypothetical protein... 40 6.5
28emb|AL389915.19| Human DNA sequence from clone RP11-438P9 on chr... 40 6.5
29emb|AL022018.1|DMC8D8 Drosophila melanogaster cosmid clone 8D8 40 6.5
30emb|AJ307671.1|BAC221D7 Mus musculus BAC22107 partial stk33 gene 40 6.5
31gb|AC104141.8| Drosophila melanogaster X BAC RP98-9H15 (Roswell ... 40 6.5
32gb|AC012533.11| Homo sapiens, clone RP11-62E9, complete sequence 40 6.5
33gb|AC025824.37| Homo sapiens chromosome 15 clone RP11-430M3, com... 40 6.5
34gb|AC091580.11| Homo sapiens chromosome 15, clone RP11-304N14, c... 40 6.5
35gb|AC022778.9| Homo sapiens chromosome 8, clone RP11-172E10, com... 40 6.5
36gb|AC093421.2| Homo sapiens chromosome 1 clone RP11-337M6, compl... 40 6.5
37gb|AC104288.4| Drosophila melanogaster X BAC RP98-30G24 (Roswell... 40 6.5
38gb|AC012478.18| Homo sapiens chromosome 15 clone RP11-386M24, co... 40 6.5
39gb|AC092247.1|AC092247 Drosophila melanogaster, chromosome 2L, r... 40 6.5
40emb|BX510931.8| Zebrafish DNA sequence from clone CH211-132M19 i... 40 6.5
41gb|AC010090.7| Homo sapiens BAC clone RP11-294G19 from 2, comple... 40 6.5
42gb|AC091544.11| Homo sapiens chromosome 15, clone RP11-386M24, c... 40 6.5
43emb|AL928793.13| Mouse DNA sequence from clone RP23-89M14 on chr... 40 6.5
44emb|BX072529.5| Zebrafish DNA sequence from clone DKEY-20D17 in ... 40 6.5
45dbj|AK111758.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.5
46emb|BX649263.6| Zebrafish DNA sequence from clone DKEY-21O22 in ... 40 6.5
47gb|AY110000.1| Zea mays CL3390_1 mRNA sequence 40 6.5
48gb|AE003647.3| Drosophila melanogaster chromosome 2L, section 56... 40 6.5
49gb|AE003420.2| Drosophila melanogaster chromosome X, section 4 o... 40 6.5
50emb|CT025549.13| Mouse DNA sequence from clone RP24-235K10 on ch... 40 6.5
51emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB1... 40 6.5 
>gb|AC137923.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0066C04, complete sequence
          Length = 133944

 Score =  101 bits (51), Expect = 2e-18
 Identities = 177/219 (80%)
 Strand = Plus / Plus

                                                                         
Query: 252   ctaacaggcttgcgacgaaacttctgatctcagatcaccatcggccgtcgcctggatctg 311
             ||||||||  ||||| ||||||||||||||| | || ||||| |   | |||||||  ||
Sbjct: 68896 ctaacaggtctgcgaggaaacttctgatctctggtccccatcagatattgcctggacttg 68955

                                                                         
Query: 312   cgcagcgtactgcaggttccagagaacctcttcgatggagggccgggtcgaagattcaac 371
              |||||||||||||| |||||||||||||||||||| || |||| ||  |||||||||||
Sbjct: 68956 tgcagcgtactgcagattccagagaacctcttcgatcgaaggcctggctgaagattcaac 69015

                                                                         
Query: 372   ggataggcatttgatcgtgatggagaccaccatcgagagtgaatcctgcgatgaggtccc 431
              ||||  |||||||  || ||||| | ||||||||| |  ||||| ||||| ||||| | 
Sbjct: 69016 tgataaacatttgacagtaatggaaatcaccatcgacaaagaatcttgcgaagaggtgct 69075

                                                    
Query: 432   aagcacgaccgggtccagaacgcgctcacgctcttcctg 470
              ||||| ||||| || |||||  |||| |||||||||||
Sbjct: 69076 cagcacaaccggatcaagaacttgctcgcgctcttcctg 69114
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  101 bits (51), Expect = 2e-18
 Identities = 177/219 (80%)
 Strand = Plus / Minus

                                                                            
Query: 252      ctaacaggcttgcgacgaaacttctgatctcagatcaccatcggccgtcgcctggatctg 311
                ||||||||  ||||| ||||||||||||||| | || ||||| |   | |||||||  ||
Sbjct: 11678830 ctaacaggtctgcgaggaaacttctgatctctggtccccatcagatattgcctggacttg 11678771

                                                                            
Query: 312      cgcagcgtactgcaggttccagagaacctcttcgatggagggccgggtcgaagattcaac 371
                 |||||||||||||| |||||||||||||||||||| || |||| ||  |||||||||||
Sbjct: 11678770 tgcagcgtactgcagattccagagaacctcttcgatcgaaggcctggctgaagattcaac 11678711

                                                                            
Query: 372      ggataggcatttgatcgtgatggagaccaccatcgagagtgaatcctgcgatgaggtccc 431
                 ||||  |||||||  || ||||| | ||||||||| |  ||||| ||||| ||||| | 
Sbjct: 11678710 tgataaacatttgacagtaatggaaatcaccatcgacaaagaatcttgcgaagaggtgct 11678651

                                                       
Query: 432      aagcacgaccgggtccagaacgcgctcacgctcttcctg 470
                 ||||| ||||| || |||||  |||| |||||||||||
Sbjct: 11678650 cagcacaaccggatcaagaacttgctcgcgctcttcctg 11678612
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  101 bits (51), Expect = 2e-18
 Identities = 177/219 (80%)
 Strand = Plus / Minus

                                                                            
Query: 252      ctaacaggcttgcgacgaaacttctgatctcagatcaccatcggccgtcgcctggatctg 311
                ||||||||  ||||| ||||||||||||||| | || ||||| |   | |||||||  ||
Sbjct: 11758019 ctaacaggtctgcgaggaaacttctgatctctggtccccatcagatattgcctggacttg 11757960

                                                                            
Query: 312      cgcagcgtactgcaggttccagagaacctcttcgatggagggccgggtcgaagattcaac 371
                 |||||||||||||| |||||||||||||||||||| || |||| ||  |||||||||||
Sbjct: 11757959 tgcagcgtactgcagattccagagaacctcttcgatcgaaggcctggctgaagattcaac 11757900

                                                                            
Query: 372      ggataggcatttgatcgtgatggagaccaccatcgagagtgaatcctgcgatgaggtccc 431
                 ||||  |||||||  || ||||| | ||||||||| |  ||||| ||||| ||||| | 
Sbjct: 11757899 tgataaacatttgacagtaatggaaatcaccatcgacaaagaatcttgcgaagaggtgct 11757840

                                                       
Query: 432      aagcacgaccgggtccagaacgcgctcacgctcttcctg 470
                 ||||| ||||| || |||||  |||| |||||||||||
Sbjct: 11757839 cagcacaaccggatcaagaacttgctcgcgctcttcctg 11757801
to top
>dbj|AK065367.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013021L08, full
            insert sequence
          Length = 3773

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 176/219 (80%)
 Strand = Plus / Minus

                                                                        
Query: 252  ctaacaggcttgcgacgaaacttctgatctcagatcaccatcggccgtcgcctggatctg 311
            ||||||||  ||||| ||||||||||||||| | || ||||| |   | |||||||  ||
Sbjct: 3396 ctaacaggtctgcgaggaaacttctgatctctggtccccatcagatattgcctggacttg 3337

                                                                        
Query: 312  cgcagcgtactgcaggttccagagaacctcttcgatggagggccgggtcgaagattcaac 371
             |||||||||||||| |||||||||||||||||||| || |||| ||  |||||||||||
Sbjct: 3336 tgcagcgtactgcagattccagagaacctcttcgatcgaaggcctggctgaagattcaac 3277

                                                                        
Query: 372  ggataggcatttgatcgtgatggagaccaccatcgagagtgaatcctgcgatgaggtccc 431
             ||||  |||||||  || ||||| | ||||||||| |  ||||| ||||| ||||| | 
Sbjct: 3276 tgataaacatttgacagtaatggaaatcaccatcgacaaagaatcttgcgaagaggtgct 3217

                                                   
Query: 432  aagcacgaccgggtccagaacgcgctcacgctcttcctg 470
             ||| | ||||| || |||||  |||| |||||||||||
Sbjct: 3216 cagctcaaccggatcaagaacttgctcgcgctcttcctg 3178
to top
>ref|XM_469944.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3633

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 313  gcagcgtactgcaggttccagagaacctcttcgatggagggccg 356
            |||||| |||||||||||||||| || || |||||||| |||||
Sbjct: 2654 gcagcgaactgcaggttccagaggacgtcctcgatggacggccg 2611
to top
>gb|AC090871.11| Oryza sativa chromosome 3 BAC OSJNBb0060J21 genomic sequence, complete
              sequence
          Length = 162497

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                          
Query: 313    gcagcgtactgcaggttccagagaacctcttcgatggagggccg 356
              |||||| |||||||||||||||| || || |||||||| |||||
Sbjct: 118317 gcagcgaactgcaggttccagaggacgtcctcgatggacggccg 118360
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                            
Query: 313      gcagcgtactgcaggttccagagaacctcttcgatggagggccg 356
                |||||| |||||||||||||||| || || |||||||| |||||
Sbjct: 32625590 gcagcgaactgcaggttccagaggacgtcctcgatggacggccg 32625547
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                        
Query: 318      gtactgcaggttccagagaacctcttcgatggagggccgg 357
                |||||||||||||||||| || || || ||||||||||||
Sbjct: 22752314 gtactgcaggttccagaggacgtcctcaatggagggccgg 22752275
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                            
Query: 313      gcagcgtactgcaggttccagagaacctcttcgatggagggccg 356
                |||||| |||||||||||||||| || || |||||||| |||||
Sbjct: 32716100 gcagcgaactgcaggttccagaggacgtcctcgatggacggccg 32716057
to top
>dbj|AP003622.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0633E08
          Length = 136471

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                     
Query: 318   gtactgcaggttccagagaacctcttcgatggagggccgg 357
             |||||||||||||||||| || || || ||||||||||||
Sbjct: 39265 gtactgcaggttccagaggacgtcctcaatggagggccgg 39226
to top
>dbj|AK103914.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-012-G10, full
           insert sequence
          Length = 1384

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                       
Query: 313 gcagcgtactgcaggttccagagaacctcttcgatggagggccg 356
           |||||| |||||||||||||||| || || |||||||| |||||
Sbjct: 865 gcagcgaactgcaggttccagaggacgtcctcgatggacggccg 822
to top
>dbj|AK100700.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023114M22, full
            insert sequence
          Length = 3125

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 313  gcagcgtactgcaggttccagagaacctcttcgatggagggccg 356
            |||||| |||||||||||||||| || || |||||||| |||||
Sbjct: 2654 gcagcgaactgcaggttccagaggacgtcctcgatggacggccg 2611
to top
>dbj|AK071881.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013045O17, full
            insert sequence
          Length = 3124

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 313  gcagcgtactgcaggttccagagaacctcttcgatggagggccg 356
            |||||| |||||||||||||||| || || |||||||| |||||
Sbjct: 2656 gcagcgaactgcaggttccagaggacgtcctcgatggacggccg 2613
to top
>gb|BT018940.1| Zea mays clone Contig86.F mRNA sequence
          Length = 1420

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 318  gtactgcaggttccagagaacctcttcgatgga 350
            |||||||||||||||||| || || ||||||||
Sbjct: 1075 gtactgcaggttccagagcacgtcgtcgatgga 1043
to top
>emb|CT025636.2| Pan troglodytes chromosome X clone RP43-029M22 map Xq28, complete
            sequence
          Length = 176404

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 144  catttccattttccatttcct 164
            |||||||||||||||||||||
Sbjct: 2755 catttccattttccatttcct 2775
to top
>emb|BX936460.6| Zebrafish DNA sequence from clone CH211-69N2 in linkage group 9,
             complete sequence
          Length = 79327

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 144   catttccattttccatttcct 164
             |||||||||||||||||||||
Sbjct: 63134 catttccattttccatttcct 63154
to top
>emb|AL603839.9| Human DNA sequence from clone RP11-656D10 on chromosome 1 Contains the
             gene for a novel zinc finger protein, the gene for a novel
             protein and three novel genes, complete sequence
          Length = 64478

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 99    acaaatgctgctgagaaaatg 119
             |||||||||||||||||||||
Sbjct: 60291 acaaatgctgctgagaaaatg 60311
to top
>gb|AC165083.2| Mus musculus BAC clone RP23-411I6 from chromosome 18, complete sequence
          Length = 208109

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 145    atttccattttccatttcctg 165
              |||||||||||||||||||||
Sbjct: 134189 atttccattttccatttcctg 134169
to top
>gb|AC099036.1| Drosophila melanogaster, chromosome 2R, region 59C-59D, BAC clone
              BACR34K16, complete sequence
          Length = 180361

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 143    tcatttccattttccatttcc 163
              |||||||||||||||||||||
Sbjct: 123081 tcatttccattttccatttcc 123061
to top
>gb|BC053462.1| Mus musculus F-box protein 38, mRNA (cDNA clone IMAGE:30008082)
          Length = 2678

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 145  atttccattttccatttcctg 165
            |||||||||||||||||||||
Sbjct: 2358 atttccattttccatttcctg 2378
to top
>gb|AY109100.1| Zea mays PCO081548 mRNA sequence
          Length = 1675

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 318  gtactgcaggttccagagaacctcttcgatgga 350
            |||||||||||||||||| || || ||||||||
Sbjct: 1313 gtactgcaggttccagagcacgtcgtcgatgga 1281
to top
>gb|AE003459.3| Drosophila melanogaster chromosome 2R, section 67 of 73 of the complete
              sequence
          Length = 283700

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 143    tcatttccattttccatttcc 163
              |||||||||||||||||||||
Sbjct: 257360 tcatttccattttccatttcc 257380
to top
>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence
          Length = 4837408

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 92      ctgatatacaaatgctgctg 111
               ||||||||||||||||||||
Sbjct: 3117072 ctgatatacaaatgctgctg 3117091
to top
>gb|AC150389.2| Branchiostoma floridae clone CH302-114C5, complete sequence
          Length = 192476

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 393    ggagaccaccatcgagagtg 412
              ||||||||||||||||||||
Sbjct: 159133 ggagaccaccatcgagagtg 159152
to top
>gb|AC165143.3| Mus musculus BAC clone RP24-391N16 from chromosome 7, complete sequence
          Length = 165017

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 45    tacaatgcaaaaacaagtca 64
             ||||||||||||||||||||
Sbjct: 20569 tacaatgcaaaaacaagtca 20550
to top
>emb|Z78200.1|CET04H1 Caenorhabditis elegans Cosmid T04H1, complete sequence
          Length = 27908

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 48   aatgcaaaaacaagtcagnaatt 70
            |||||||||||||||||| ||||
Sbjct: 4830 aatgcaaaaacaagtcagaaatt 4808
to top
>ref|XM_762959.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_663_6261_4543)
           partial mRNA
          Length = 1719

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 333 gagaacctcttcgatggagggccg 356
           ||||| ||||||||||||||||||
Sbjct: 966 gagaagctcttcgatggagggccg 943
to top
>emb|AL389915.19| Human DNA sequence from clone RP11-438P9 on chromosome 9 Contains a
              ribosomal protein S16 (RPS16) pseudogene, a peptidylprolyl
              isomerase A (cyclophilin A) (PPIA) pseudogene and a CpG
              island, complete sequence
          Length = 199601

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 140    tagtcatttccattttccat 159
              ||||||||||||||||||||
Sbjct: 175914 tagtcatttccattttccat 175933
to top
>emb|AL022018.1|DMC8D8 Drosophila melanogaster cosmid clone 8D8
          Length = 38397

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 144   catttccattttccatttcc 163
             ||||||||||||||||||||
Sbjct: 15975 catttccattttccatttcc 15994
to top
>emb|AJ307671.1|BAC221D7 Mus musculus BAC22107 partial stk33 gene
          Length = 158201

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 45    tacaatgcaaaaacaagtca 64
             ||||||||||||||||||||
Sbjct: 73390 tacaatgcaaaaacaagtca 73371
to top
>gb|AC104141.8| Drosophila melanogaster X BAC RP98-9H15 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 181360

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 144   catttccattttccatttcc 163
             ||||||||||||||||||||
Sbjct: 12366 catttccattttccatttcc 12385
to top
>gb|AC012533.11| Homo sapiens, clone RP11-62E9, complete sequence
          Length = 191358

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 224    ttccatgctgccatgctgct 243
              ||||||||||||||||||||
Sbjct: 114593 ttccatgctgccatgctgct 114612
to top
>gb|AC025824.37| Homo sapiens chromosome 15 clone RP11-430M3, complete sequence
          Length = 177917

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 144   catttccattttccatttcc 163
             ||||||||||||||||||||
Sbjct: 53027 catttccattttccatttcc 53008
to top
>gb|AC091580.11| Homo sapiens chromosome 15, clone RP11-304N14, complete sequence
          Length = 108369

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 144   catttccattttccatttcc 163
             ||||||||||||||||||||
Sbjct: 98156 catttccattttccatttcc 98137
to top
>gb|AC022778.9| Homo sapiens chromosome 8, clone RP11-172E10, complete sequence
          Length = 138953

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 224   ttccatgctgccatgctgct 243
             ||||||||||||||||||||
Sbjct: 34616 ttccatgctgccatgctgct 34635
to top
>gb|AC093421.2| Homo sapiens chromosome 1 clone RP11-337M6, complete sequence
          Length = 183974

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 22     agtagtaaaaaacactattnaca 44
              ||||||||||||||||||| |||
Sbjct: 129081 agtagtaaaaaacactattaaca 129103
to top
>gb|AC104288.4| Drosophila melanogaster X BAC RP98-30G24 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 164252

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 144   catttccattttccatttcc 163
             ||||||||||||||||||||
Sbjct: 71881 catttccattttccatttcc 71900
to top
>gb|AC012478.18| Homo sapiens chromosome 15 clone RP11-386M24, complete sequence
          Length = 186540

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 144  catttccattttccatttcc 163
            ||||||||||||||||||||
Sbjct: 3739 catttccattttccatttcc 3720
to top
>gb|AC092247.1|AC092247 Drosophila melanogaster, chromosome 2L, region 35X-35X, BAC clone
              BACR36B06, complete sequence
          Length = 183436

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 144    catttccattttccatttcc 163
              ||||||||||||||||||||
Sbjct: 107503 catttccattttccatttcc 107522
to top
>emb|BX510931.8| Zebrafish DNA sequence from clone CH211-132M19 in linkage group 21,
              complete sequence
          Length = 181237

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 144    catttccattttccatttcc 163
              ||||||||||||||||||||
Sbjct: 131628 catttccattttccatttcc 131609
to top
>gb|AC010090.7| Homo sapiens BAC clone RP11-294G19 from 2, complete sequence
          Length = 115597

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 211   tgcaggtcatggtttccatg 230
             ||||||||||||||||||||
Sbjct: 63840 tgcaggtcatggtttccatg 63821
to top
>gb|AC091544.11| Homo sapiens chromosome 15, clone RP11-386M24, complete sequence
          Length = 186674

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 144    catttccattttccatttcc 163
              ||||||||||||||||||||
Sbjct: 182936 catttccattttccatttcc 182955
to top
>emb|AL928793.13| Mouse DNA sequence from clone RP23-89M14 on chromosome 2, complete
              sequence
          Length = 238545

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 98     tacaaatgctgctgagaaaa 117
              ||||||||||||||||||||
Sbjct: 112459 tacaaatgctgctgagaaaa 112478
to top
>emb|BX072529.5| Zebrafish DNA sequence from clone DKEY-20D17 in linkage group 7, complete
              sequence
          Length = 223845

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 42     acatacaatgcaaaaacaag 61
              ||||||||||||||||||||
Sbjct: 201225 acatacaatgcaaaaacaag 201244
to top
>dbj|AK111758.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023058G03, full
           insert sequence
          Length = 923

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 318 gtactgcaggttccagagaacctcttcgatggaggg 353
           |||||||||||||||||| || || || ||||||||
Sbjct: 593 gtactgcaggttccagaggacgtcctcaatggaggg 558
to top
>emb|BX649263.6| Zebrafish DNA sequence from clone DKEY-21O22 in linkage group 4, complete
              sequence
          Length = 143254

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 45     tacaatgcaaaaacaagtca 64
              ||||||||||||||||||||
Sbjct: 112258 tacaatgcaaaaacaagtca 112239
to top
>gb|AY110000.1| Zea mays CL3390_1 mRNA sequence
          Length = 574

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 303 ctggatctgcgcagcgtactgcaggttccagagaac 338
           ||||| ||| ||||| || |||||||||||||||||
Sbjct: 204 ctggacctgggcagcatattgcaggttccagagaac 239
to top
>gb|AE003647.3| Drosophila melanogaster chromosome 2L, section 56 of 83 of the complete
             sequence
          Length = 261949

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 144   catttccattttccatttcc 163
             ||||||||||||||||||||
Sbjct: 40137 catttccattttccatttcc 40156
to top
>gb|AE003420.2| Drosophila melanogaster chromosome X, section 4 of 74 of the complete
              sequence
          Length = 308311

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 144    catttccattttccatttcc 163
              ||||||||||||||||||||
Sbjct: 183201 catttccattttccatttcc 183220
to top
>emb|CT025549.13| Mouse DNA sequence from clone RP24-235K10 on chromosome 13, complete
             sequence
          Length = 162143

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 222   gtttccatgctgccatgctg 241
             ||||||||||||||||||||
Sbjct: 39180 gtttccatgctgccatgctg 39161
to top
>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica
          Length = 3633272

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 144     catttccattttccatttcc 163
               ||||||||||||||||||||
Sbjct: 3300771 catttccattttccatttcc 3300752


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,729,740
Number of Sequences: 3902068
Number of extensions: 3729740
Number of successful extensions: 69983
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69784
Number of HSP's gapped (non-prelim): 195
length of query: 479
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 457
effective length of database: 17,147,199,772
effective search space: 7836270295804
effective search space used: 7836270295804
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top