ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags3n09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009629.1| Triticum aestivum clone wre1n.pk168.h11:fis, full... 809 0.0
2dbj|AK060718.1| Oryza sativa (japonica cultivar-group) cDNA clon... 331 1e-87
3dbj|AK120113.1| Oryza sativa (japonica cultivar-group) cDNA clon... 317 2e-83
4gb|AY108579.1| Zea mays PCO102927 mRNA sequence 260 4e-66
5gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 137 4e-29
6gb|AC146619.1| Genomic sequence for Oryza sativa, Nipponbare str... 137 4e-29
7dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 137 4e-29
8gb|AY111909.1| Zea mays CL491_-2 mRNA sequence 90 9e-15
9gb|BT013728.1| Lycopersicon esculentum clone 132587R, mRNA sequence 64 5e-07
10gb|AF363285.1|AF363285 Avicennia marina mitochondrial processing... 58 3e-05
11gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome 44 0.49
12ref|NM_118394.2| Arabidopsis thaliana MYB85; DNA binding / trans... 42 2.0
13gb|AY519608.1| Arabidopsis thaliana MYB transcription factor (At... 42 2.0
14gb|DQ446863.1| Arabidopsis thaliana clone pENTR221-At4g22680 myb... 42 2.0
15emb|CR450809.6| Zebrafish DNA sequence from clone CH211-195I6 in... 42 2.0
16emb|X80237.1|STBIMPP S.tuberosum mRNA for beta-I MPP 42 2.0
17emb|AL161557.2|ATCHRIV57 Arabidopsis thaliana DNA chromosome 4, ... 42 2.0
18emb|AL021635.1|ATT12H17 Arabidopsis thaliana DNA chromosome 4, B... 42 2.0
19ref|XM_678031.1| PREDICTED: Danio rerio similar to retinal-speci... 42 2.0
20gb|AF175993.2|AF175993 Arabidopsis thaliana putative transcripti... 42 2.0
21gb|AC105061.16| Mus musculus chromosome 19, clone RP23-117I10, c... 42 2.0
22emb|BX829062.1|CNS0A3K8 Arabidopsis thaliana Full-length cDNA Co... 42 2.0
23gb|AF297643.1|AF297643 Cucumis melo mitochondrial processing pep... 42 2.0
24gb|AY085497.1| Arabidopsis thaliana clone 154343 mRNA, complete ... 42 2.0
25dbj|AK175777.1| Arabidopsis thaliana mRNA for myb-like protein, ... 42 2.0
26dbj|AK175718.1| Arabidopsis thaliana mRNA for myb-like protein, ... 42 2.0
27gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-... 40 7.7
28gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete... 40 7.7
29ref|XM_611761.2| PREDICTED: Bos taurus similar to CG2747-PB, iso... 40 7.7
30ref|XM_879730.1| PREDICTED: Bos taurus similar to CG2747-PB, iso... 40 7.7
31gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome 40 7.7
32gb|AY810036.1| Schistosoma japonicum SJCHGC05583 protein mRNA, p... 40 7.7
33gb|AC146174.2| Pan troglodytes BAC clone CH251-549F12 from Y, co... 40 7.7
34gb|CP000001.1| Bacillus cereus E33L, complete genome 40 7.7
35emb|AL353150.25| Human DNA sequence from clone RP11-82L18 on chr... 40 7.7
36emb|AL121911.15|HSDJ989D7 Human DNA sequence from clone RP5-989D... 40 7.7
37emb|AL050344.31|HSJ799D16 Human DNA sequence from clone RP4-799D... 40 7.7
38gb|AF533976.1| Oreochromis niloticus unknown sequence 40 7.7
39emb|Z98981.3|SPAC6F6 S.pombe chromosome I cosmid c6F6 40 7.7
40gb|AC078925.18| Homo sapiens 12q BAC RP11-76C10 (Roswell Park Ca... 40 7.7
41dbj|BS000614.1| Pan troglodytes chromosome Y clone:PTBY-009K01, ... 40 7.7
42dbj|BS000556.1| Pan troglodytes chromosome Y clone:PTB-461C11, c... 40 7.7
43gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 40 7.7
44ref|NM_001019329.1| Schizosaccharomyces pombe 972h- hypothetical... 40 7.7
45gb|AC006040.3|AC006040 Homo sapiens BAC clone RP11-400O10 from Y... 40 7.7
46emb|CR456625.13| Zebrafish DNA sequence from clone DKEY-76G24 in... 40 7.7
47emb|CT009515.16| Mouse DNA sequence from clone RP23-117H6 on chr... 40 7.7
48gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome 40 7.7
49gb|AE016879.1| Bacillus anthracis str. Ames, complete genome 40 7.7
50gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome 40 7.7
51gb|AF041427.1|AF041427 Homo sapiens ribosomal protein s4 Y isofo... 40 7.7 
>gb|BT009629.1| Triticum aestivum clone wre1n.pk168.h11:fis, full insert mRNA
            sequence
          Length = 1391

 Score =  809 bits (408), Expect = 0.0
 Identities = 466/484 (96%), Gaps = 5/484 (1%)
 Strand = Plus / Minus

                                                                        
Query: 88   cacgtcagtcgaatttgcctaccattattgacagctttgtgggtttgcaaaaggaagaca 147
            |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1214 cacgtcagtcaaatttgcctaccattattgacagctttgtgggtttgcaaaaggaagaga 1155

                                                                        
Query: 148  ggggcaaggaaaacgaagactcaaaaaattcctccacttcggcacataatatgtgcgtgg 207
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1154 agggcaaggaaaacgaagactcaaaaaattcctccacttcggcacataatatgtgcgtgg 1095

                                                                        
Query: 208  atgtggccttataatatactgatgccaaaacaagcaatcatcttgcctttgcanactgta 267
            |||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1094 atgtggcctta--atatactgatgccaaaacaagcaatcatcttgcctttgcagactgta 1037

                                                                        
Query: 268  aacatggtacactgctggttgaatc---tagtaacggagcatgtaggtcctgcgtctgaa 324
            |||||||||||| |||||| |||||   ||||||||||||||||||||||||||||||||
Sbjct: 1036 aacatggtacaccgctggtcgaatcatctagtaacggagcatgtaggtcctgcgtctgaa 977

                                                                        
Query: 325  ccagttgtagtctggaagagtcttaattggtcccatggcagcgatggcaatatcctggtc 384
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 976  ccagttgtagtctggaagagacttaattggtcccatggcagcgatggcaatatcctggtc 917

                                                                        
Query: 385  aaagatgaagcggtttgcaacacgcctgatagtgctgggatcaactgcatctattctcgc 444
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 916  aaagatgaagcggtttgcaacacgcctgatagtgctcggatcaactgcatctattctcgc 857

                                                                        
Query: 445  aaaaagctcgggaataggaattctacggccatagatgagttgctgacgtccaatatcctc 504
            ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 856  aaaaagctcaggaataggaattctacggccatagatgagttgctggcgtccaatatcctc 797

                                                                        
Query: 505  aacaacagcagtggagccatcaaggtgtagttggatggacgatttcagctgattacgtgc 564
            ||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||
Sbjct: 796  aacaacagcagtggagccatcaaggtggagttggatggaggatttcagctgattgcgtgc 737

                
Query: 565  acga 568
            ||||
Sbjct: 736  acga 733



 Score =  117 bits (59), Expect = 4e-23
 Identities = 77/82 (93%), Gaps = 1/82 (1%)
 Strand = Plus / Minus

                                                                        
Query: 8    ttaaaatnattggccgaaagacaacaatatccgaacacaaagatggaaaagtatcgtgac 67
            ||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 1317 ttaaaattattggccgaaagacaacaatatccgaacac-aagatggaaaagtatcatgac 1259

                                  
Query: 68   aattcatcatcatcataaaaca 89
             ||||||||||||| |||||||
Sbjct: 1258 gattcatcatcatcgtaaaaca 1237
to top
>dbj|AK060718.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-E10, full
            insert sequence
          Length = 1410

 Score =  331 bits (167), Expect = 1e-87
 Identities = 304/350 (86%)
 Strand = Plus / Minus

                                                                        
Query: 218  ataatatactgatgccaaaacaagcaatcatcttgcctttgcanactgtaaacatggtac 277
            |||||||||||||||||||| | ||||| |||||||||||||| | ||||||||| ||||
Sbjct: 1083 ataatatactgatgccaaaagaggcaattatcttgcctttgcagaatgtaaacatagtac 1024

                                                                        
Query: 278  actgctggttgaatctagtaacggagcatgtaggtcctgcgtctgaaccagttgtagtct 337
            |  | | |  || |||||||||||||||||||||||| ||| ||||||||||||||||| 
Sbjct: 1023 atcggttggagagtctagtaacggagcatgtaggtccggcgcctgaaccagttgtagtcc 964

                                                                        
Query: 338  ggaagagtcttaattggtcccatggcagcgatggcaatatcctggtcaaagatgaagcgg 397
            ||||||  || ||| |||||||| ||||| || || |||||||||||||| ||||| |||
Sbjct: 963  ggaagaccctgaatgggtcccattgcagcaatagcgatatcctggtcaaaaatgaaacgg 904

                                                                        
Query: 398  tttgcaacacgcctgatagtgctgggatcaactgcatctattctcgcaaaaagctcggga 457
            || || || ||| |||  ||||| |  ||||||||||||||||| ||||||||||| |||
Sbjct: 903  ttggccactcgcttgactgtgcttgcgtcaactgcatctattcttgcaaaaagctcagga 844

                                                                        
Query: 458  ataggaattctacggccatagatgagttgctgacgtccaatatcctcaacaacagcagtg 517
            ||||||||||| || ||||||||||||  |||||| ||||||||||||||||||||||||
Sbjct: 843  ataggaattcttcgaccatagatgagtaactgacggccaatatcctcaacaacagcagtg 784

                                                              
Query: 518  gagccatcaaggtgtagttggatggacgatttcagctgattacgtgcacg 567
            || ||||| ||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 783  gaaccatcgaggtgcagttggatggaagatttcagctgattacgtgcacg 734



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 43/46 (93%)
 Strand = Plus / Minus

                                                          
Query: 88   cacgtcagtcgaatttgcctaccattattgacagctttgtgggttt 133
            ||||||||| ||||||||||| |||||||||||||||||| |||||
Sbjct: 1206 cacgtcagttgaatttgcctatcattattgacagctttgttggttt 1161
to top
>dbj|AK120113.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013025E12, full
            insert sequence
          Length = 2166

 Score =  317 bits (160), Expect = 2e-83
 Identities = 304/351 (86%), Gaps = 1/351 (0%)
 Strand = Plus / Minus

                                                                        
Query: 218  ataatatactgatgccaaaacaagcaatcatcttgcctttgcanactgtaaacatggtac 277
            |||||||||||||||||||| | ||||| |||||||||||||| | ||||||||| ||||
Sbjct: 1841 ataatatactgatgccaaaagaggcaattatcttgcctttgcagaatgtaaacatagtac 1782

                                                                        
Query: 278  actgctggttgaatctagtaacggagcatgtaggtcctgcgtctgaaccagttgtagtct 337
            |  | | |  || |||||||||||||||||||||||| ||| ||||||||||||||||| 
Sbjct: 1781 atcggttggagagtctagtaacggagcatgtaggtccggcgcctgaaccagttgtagtcc 1722

                                                                        
Query: 338  ggaagagtcttaattggtcccatggcagcgatggcaatatcctggtcaaagatgaagcgg 397
            ||||||  || ||| |||||||| ||||| || || |||||||||||||| ||||| |||
Sbjct: 1721 ggaagaccctgaatgggtcccattgcagcaatagcgatatcctggtcaaaaatgaaacgg 1662

                                                                        
Query: 398  tttgcaacacgcctgatagtgctgggatcaactgcatctattctcgcaaaaagctcggga 457
            || || || ||| |||  ||||| |  ||||||||||||||||| ||||||||||| |||
Sbjct: 1661 ttggccactcgcttgactgtgcttgcgtcaactgcatctattcttgcaaaaagctcagga 1602

                                                                        
Query: 458  ataggaattctacggccatagatgagttgctgacgtccaatatcctcaacaacagca-gt 516
            ||||||||||| || ||||||||||||  |||||| ||||||||||||||||||||| ||
Sbjct: 1601 ataggaattcttcgaccatagatgagtaactgacggccaatatcctcaacaacagcaggt 1542

                                                               
Query: 517  ggagccatcaaggtgtagttggatggacgatttcagctgattacgtgcacg 567
            ||| ||||| ||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 1541 ggaaccatcgaggtgcagttggatggaagatttcagctgattacgtgcacg 1491



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 43/46 (93%)
 Strand = Plus / Minus

                                                          
Query: 88   cacgtcagtcgaatttgcctaccattattgacagctttgtgggttt 133
            ||||||||| ||||||||||| |||||||||||||||||| |||||
Sbjct: 1964 cacgtcagttgaatttgcctatcattattgacagctttgttggttt 1919
to top
>gb|AY108579.1| Zea mays PCO102927 mRNA sequence
          Length = 2137

 Score =  260 bits (131), Expect = 4e-66
 Identities = 242/279 (86%)
 Strand = Plus / Minus

                                                                        
Query: 289  aatctagtaacggagcatgtaggtcctgcgtctgaaccagttgtagtctggaagagtctt 348
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||    | 
Sbjct: 1757 aatctagtaacggagcatgtaggtccggcgtctgaaccagttgtagtctggaagtccttg 1698

                                                                        
Query: 349  aattggtcccatggcagcgatggcaatatcctggtcaaagatgaagcggtttgcaacacg 408
             || || ||||| ||||| || |||| |||||| ||||||||||||||||||||||||||
Sbjct: 1697 gatcggccccatcgcagcaatagcaacatcctgatcaaagatgaagcggtttgcaacacg 1638

                                                                        
Query: 409  cctgatagtgctgggatcaactgcatctattctcgcaaaaagctcgggaataggaattct 468
            | | | |||||| | |||||| ||||||||||| ||||||||||||||  ||||||||||
Sbjct: 1637 cttcacagtgcttgcatcaacagcatctattcttgcaaaaagctcgggggtaggaattct 1578

                                                                        
Query: 469  acggccatagatgagttgctgacgtccaatatcctcaacaacagcagtggagccatcaag 528
             || |||||| | ||  ||||||| ||||| ||||||||||||||||| || ||||||||
Sbjct: 1577 tcgtccataggtcagcagctgacggccaatgtcctcaacaacagcagttgaaccatcaag 1518

                                                   
Query: 529  gtgtagttggatggacgatttcagctgattacgtgcacg 567
            ||| |||||||| || || ||||||||||||||||||||
Sbjct: 1517 gtggagttggatagaggacttcagctgattacgtgcacg 1479



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                      
Query: 88   cacgtcagtcgaatttgcctaccattattgacagctttgtgg 129
            |||||||||||||  |||||| |||||||||||| |||||||
Sbjct: 1953 cacgtcagtcgaacctgcctatcattattgacagatttgtgg 1912
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  137 bits (69), Expect = 4e-29
 Identities = 140/164 (85%)
 Strand = Plus / Minus

                                                                           
Query: 218     ataatatactgatgccaaaacaagcaatcatcttgcctttgcanactgtaaacatggtac 277
               |||||||||||||||||||| | ||||| |||||||||||||| | ||||||||| ||||
Sbjct: 5842767 ataatatactgatgccaaaagaggcaattatcttgcctttgcagaatgtaaacatagtac 5842708

                                                                           
Query: 278     actgctggttgaatctagtaacggagcatgtaggtcctgcgtctgaaccagttgtagtct 337
               |  | | |  || |||||||||||||||||||||||| ||| ||||||||||||||||| 
Sbjct: 5842707 atcggttggagagtctagtaacggagcatgtaggtccggcgcctgaaccagttgtagtcc 5842648

                                                           
Query: 338     ggaagagtcttaattggtcccatggcagcgatggcaatatcctg 381
               ||||||  || ||| |||||||| ||||| || || ||||||||
Sbjct: 5842647 ggaagaccctgaatgggtcccattgcagcaatagcgatatcctg 5842604



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 64/69 (92%)
 Strand = Plus / Minus

                                                                           
Query: 487     ctgacgtccaatatcctcaacaacagcagtggagccatcaaggtgtagttggatggacga 546
               |||||| |||||||||||||||||||||||||| ||||| ||||| ||||||||||| ||
Sbjct: 5841591 ctgacggccaatatcctcaacaacagcagtggaaccatcgaggtgcagttggatggaaga 5841532

                        
Query: 547     tttcagctg 555
               |||||||||
Sbjct: 5841531 tttcagctg 5841523



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 92/107 (85%)
 Strand = Plus / Minus

                                                                           
Query: 378     cctggtcaaagatgaagcggtttgcaacacgcctgatagtgctgggatcaactgcatcta 437
               |||||||||| ||||| ||||| || || ||| |||  ||||| |  |||||||||||||
Sbjct: 5841786 cctggtcaaaaatgaaacggttggccactcgcttgactgtgcttgcgtcaactgcatcta 5841727

                                                              
Query: 438     ttctcgcaaaaagctcgggaataggaattctacggccatagatgagt 484
               |||| ||||||||||| |||||||||||||| || ||||||||||||
Sbjct: 5841726 ttcttgcaaaaagctcaggaataggaattcttcgaccatagatgagt 5841680



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 43/46 (93%)
 Strand = Plus / Minus

                                                             
Query: 88      cacgtcagtcgaatttgcctaccattattgacagctttgtgggttt 133
               ||||||||| ||||||||||| |||||||||||||||||| |||||
Sbjct: 5842890 cacgtcagttgaatttgcctatcattattgacagctttgttggttt 5842845
to top
>gb|AC146619.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNAa0021B21, from chromosome 3, complete sequence
          Length = 139208

 Score =  137 bits (69), Expect = 4e-29
 Identities = 140/164 (85%)
 Strand = Plus / Minus

                                                                         
Query: 218   ataatatactgatgccaaaacaagcaatcatcttgcctttgcanactgtaaacatggtac 277
             |||||||||||||||||||| | ||||| |||||||||||||| | ||||||||| ||||
Sbjct: 71597 ataatatactgatgccaaaagaggcaattatcttgcctttgcagaatgtaaacatagtac 71538

                                                                         
Query: 278   actgctggttgaatctagtaacggagcatgtaggtcctgcgtctgaaccagttgtagtct 337
             |  | | |  || |||||||||||||||||||||||| ||| ||||||||||||||||| 
Sbjct: 71537 atcggttggagagtctagtaacggagcatgtaggtccggcgcctgaaccagttgtagtcc 71478

                                                         
Query: 338   ggaagagtcttaattggtcccatggcagcgatggcaatatcctg 381
             ||||||  || ||| |||||||| ||||| || || ||||||||
Sbjct: 71477 ggaagaccctgaatgggtcccattgcagcaatagcgatatcctg 71434



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 64/69 (92%)
 Strand = Plus / Minus

                                                                         
Query: 487   ctgacgtccaatatcctcaacaacagcagtggagccatcaaggtgtagttggatggacga 546
             |||||| |||||||||||||||||||||||||| ||||| ||||| ||||||||||| ||
Sbjct: 70421 ctgacggccaatatcctcaacaacagcagtggaaccatcgaggtgcagttggatggaaga 70362

                      
Query: 547   tttcagctg 555
             |||||||||
Sbjct: 70361 tttcagctg 70353



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 92/107 (85%)
 Strand = Plus / Minus

                                                                         
Query: 378   cctggtcaaagatgaagcggtttgcaacacgcctgatagtgctgggatcaactgcatcta 437
             |||||||||| ||||| ||||| || || ||| |||  ||||| |  |||||||||||||
Sbjct: 70616 cctggtcaaaaatgaaacggttggccactcgcttgactgtgcttgcgtcaactgcatcta 70557

                                                            
Query: 438   ttctcgcaaaaagctcgggaataggaattctacggccatagatgagt 484
             |||| ||||||||||| |||||||||||||| || ||||||||||||
Sbjct: 70556 ttcttgcaaaaagctcaggaataggaattcttcgaccatagatgagt 70510



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 43/46 (93%)
 Strand = Plus / Minus

                                                           
Query: 88    cacgtcagtcgaatttgcctaccattattgacagctttgtgggttt 133
             ||||||||| ||||||||||| |||||||||||||||||| |||||
Sbjct: 71720 cacgtcagttgaatttgcctatcattattgacagctttgttggttt 71675
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  137 bits (69), Expect = 4e-29
 Identities = 140/164 (85%)
 Strand = Plus / Minus

                                                                           
Query: 218     ataatatactgatgccaaaacaagcaatcatcttgcctttgcanactgtaaacatggtac 277
               |||||||||||||||||||| | ||||| |||||||||||||| | ||||||||| ||||
Sbjct: 5841980 ataatatactgatgccaaaagaggcaattatcttgcctttgcagaatgtaaacatagtac 5841921

                                                                           
Query: 278     actgctggttgaatctagtaacggagcatgtaggtcctgcgtctgaaccagttgtagtct 337
               |  | | |  || |||||||||||||||||||||||| ||| ||||||||||||||||| 
Sbjct: 5841920 atcggttggagagtctagtaacggagcatgtaggtccggcgcctgaaccagttgtagtcc 5841861

                                                           
Query: 338     ggaagagtcttaattggtcccatggcagcgatggcaatatcctg 381
               ||||||  || ||| |||||||| ||||| || || ||||||||
Sbjct: 5841860 ggaagaccctgaatgggtcccattgcagcaatagcgatatcctg 5841817



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 64/69 (92%)
 Strand = Plus / Minus

                                                                           
Query: 487     ctgacgtccaatatcctcaacaacagcagtggagccatcaaggtgtagttggatggacga 546
               |||||| |||||||||||||||||||||||||| ||||| ||||| ||||||||||| ||
Sbjct: 5840804 ctgacggccaatatcctcaacaacagcagtggaaccatcgaggtgcagttggatggaaga 5840745

                        
Query: 547     tttcagctg 555
               |||||||||
Sbjct: 5840744 tttcagctg 5840736



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 92/107 (85%)
 Strand = Plus / Minus

                                                                           
Query: 378     cctggtcaaagatgaagcggtttgcaacacgcctgatagtgctgggatcaactgcatcta 437
               |||||||||| ||||| ||||| || || ||| |||  ||||| |  |||||||||||||
Sbjct: 5840999 cctggtcaaaaatgaaacggttggccactcgcttgactgtgcttgcgtcaactgcatcta 5840940

                                                              
Query: 438     ttctcgcaaaaagctcgggaataggaattctacggccatagatgagt 484
               |||| ||||||||||| |||||||||||||| || ||||||||||||
Sbjct: 5840939 ttcttgcaaaaagctcaggaataggaattcttcgaccatagatgagt 5840893



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 43/46 (93%)
 Strand = Plus / Minus

                                                             
Query: 88      cacgtcagtcgaatttgcctaccattattgacagctttgtgggttt 133
               ||||||||| ||||||||||| |||||||||||||||||| |||||
Sbjct: 5842103 cacgtcagttgaatttgcctatcattattgacagctttgttggttt 5842058
to top
>gb|AY111909.1| Zea mays CL491_-2 mRNA sequence
          Length = 584

 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 93/109 (85%)
 Strand = Plus / Minus

                                                                       
Query: 459 taggaattctacggccatagatgagttgctgacgtccaatatcctcaacaacagcagtgg 518
           |||||||||| || |||||| | ||  |||| || ||||| ||||| ||||||||||| |
Sbjct: 557 taggaattcttcgtccataggtcagcagctggcggccaatgtcctcgacaacagcagttg 498

                                                            
Query: 519 agccatcaaggtgtagttggatggacgatttcagctgattacgtgcacg 567
           | ||||||||||| |||||||| || || ||||||||||||||||||||
Sbjct: 497 aaccatcaaggtggagttggattgaggacttcagctgattacgtgcacg 449
to top
>gb|BT013728.1| Lycopersicon esculentum clone 132587R, mRNA sequence
          Length = 1778

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                    
Query: 291  tctagtaacggagcatgtaggtcctgcgtctgaaccagtt 330
            |||| ||||||||||||||||| |||||||||||||||||
Sbjct: 1667 tctaataacggagcatgtaggttctgcgtctgaaccagtt 1628
to top
>gb|AF363285.1|AF363285 Avicennia marina mitochondrial processing peptidase mRNA, complete
            cds; nuclear gene for mitochondrial product
          Length = 1870

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                        
Query: 383  tcaaagatgaagcggtttgcaacacgcctgatagtgctgggatcaactgcatctattctc 442
            ||||| ||||| ||||||||||||||| |||| ||||||||||| || || ||||| || 
Sbjct: 1552 tcaaatatgaatcggtttgcaacacgcttgatggtgctgggatctacggcgtctatcctg 1493

                 
Query: 443  gcaaa 447
            |||||
Sbjct: 1492 gcaaa 1488



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                            
Query: 292  ctagtaacggagcatgtaggtcctgcgtctgaaccagttgtagtctgg 339
            |||||||||||||  |||||| ||||| |||||||||||||| |||||
Sbjct: 1643 ctagtaacggagccagtaggttctgcgcctgaaccagttgtaatctgg 1596
to top
>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome
          Length = 3179300

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 142     aagacaggggcaaggaaaacga 163
               ||||||||||||||||||||||
Sbjct: 1831617 aagacaggggcaaggaaaacga 1831596
to top
>ref|NM_118394.2| Arabidopsis thaliana MYB85; DNA binding / transcription factor
           AT4G22680 (MYB85) mRNA, complete cds
          Length = 1386

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 66  acaattcatcatcatcataaa 86
           |||||||||||||||||||||
Sbjct: 734 acaattcatcatcatcataaa 714
to top
>gb|AY519608.1| Arabidopsis thaliana MYB transcription factor (At4g22680) mRNA,
           complete cds
          Length = 801

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 66  acaattcatcatcatcataaa 86
           |||||||||||||||||||||
Sbjct: 598 acaattcatcatcatcataaa 578
to top
>gb|DQ446863.1| Arabidopsis thaliana clone pENTR221-At4g22680 myb family
           transcription factor (At4g22680) mRNA, complete cds
          Length = 801

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 66  acaattcatcatcatcataaa 86
           |||||||||||||||||||||
Sbjct: 598 acaattcatcatcatcataaa 578
to top
>emb|CR450809.6| Zebrafish DNA sequence from clone CH211-195I6 in linkage group 2,
              complete sequence
          Length = 206746

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 472    gccatagatgagttgctgacg 492
              |||||||||||||||||||||
Sbjct: 169259 gccatagatgagttgctgacg 169279
to top
>emb|X80237.1|STBIMPP S.tuberosum mRNA for beta-I MPP
          Length = 1961

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                         
Query: 289  aatctagtaacggagcatgtaggtcctgcgtctgaaccagttgta 333
            ||||||||| || |||  ||| |||||||||| ||||||||||||
Sbjct: 1626 aatctagtagcgcagccagtatgtcctgcgtcggaaccagttgta 1582



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 545  gatttcagctgattacgtgc 564
            ||||||||||||||||||||
Sbjct: 1370 gatttcagctgattacgtgc 1351
to top
>emb|AL161557.2|ATCHRIV57 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 57
          Length = 199577

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 66     acaattcatcatcatcataaa 86
              |||||||||||||||||||||
Sbjct: 159699 acaattcatcatcatcataaa 159719
to top
>emb|AL021635.1|ATT12H17 Arabidopsis thaliana DNA chromosome 4, BAC clone T12H17 (ESSAII
             project)
          Length = 89350

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 66    acaattcatcatcatcataaa 86
             |||||||||||||||||||||
Sbjct: 16030 acaattcatcatcatcataaa 16050
to top
>ref|XM_678031.1| PREDICTED: Danio rerio similar to retinal-specific ATP transporter
            ABCA4 (LOC555506), mRNA
          Length = 4932

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 472  gccatagatgagttgctgacg 492
            |||||||||||||||||||||
Sbjct: 4825 gccatagatgagttgctgacg 4845
to top
>gb|AF175993.2|AF175993 Arabidopsis thaliana putative transcription factor (MYB85) mRNA,
           complete cds
          Length = 813

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 66  acaattcatcatcatcataaa 86
           |||||||||||||||||||||
Sbjct: 610 acaattcatcatcatcataaa 590
to top
>gb|AC105061.16| Mus musculus chromosome 19, clone RP23-117I10, complete sequence
          Length = 210038

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 223    atactgatgccaaaacaagca 243
              |||||||||||||||||||||
Sbjct: 156558 atactgatgccaaaacaagca 156538
to top
>emb|BX829062.1|CNS0A3K8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL65ZC06 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 912

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 66  acaattcatcatcatcataaa 86
           |||||||||||||||||||||
Sbjct: 561 acaattcatcatcatcataaa 541
to top
>gb|AF297643.1|AF297643 Cucumis melo mitochondrial processing peptidase beta subunit mRNA,
            complete cds; nuclear gene for mitochondrial product
          Length = 1906

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 63/77 (81%)
 Strand = Plus / Minus

                                                                        
Query: 398  tttgcaacacgcctgatagtgctgggatcaactgcatctattctcgcaaaaagctcggga 457
            |||||||||||  | |||||||| | |||||| ||||| ||||| ||||| |  |||| |
Sbjct: 1520 tttgcaacacgttttatagtgcttgcatcaacagcatcaattcttgcaaacaattcggca 1461

                             
Query: 458  ataggaattctacggcc 474
            |  ||||||||||||||
Sbjct: 1460 aacggaattctacggcc 1444
to top
>gb|AY085497.1| Arabidopsis thaliana clone 154343 mRNA, complete sequence
          Length = 1154

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 66  acaattcatcatcatcataaa 86
           |||||||||||||||||||||
Sbjct: 734 acaattcatcatcatcataaa 714
to top
>dbj|AK175777.1| Arabidopsis thaliana mRNA for myb-like protein, complete cds,
           clone: RAFL22-35-I17
          Length = 1201

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 66  acaattcatcatcatcataaa 86
           |||||||||||||||||||||
Sbjct: 731 acaattcatcatcatcataaa 711
to top
>dbj|AK175718.1| Arabidopsis thaliana mRNA for myb-like protein, complete cds,
           clone: RAFL22-25-P15
          Length = 1201

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 66  acaattcatcatcatcataaa 86
           |||||||||||||||||||||
Sbjct: 731 acaattcatcatcatcataaa 711
to top
>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome
          Length = 5237682

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 495     caatatcctcaacaacagca 514
               ||||||||||||||||||||
Sbjct: 4914380 caatatcctcaacaacagca 4914399
to top
>gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete genome
          Length = 5227419

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 495     caatatcctcaacaacagca 514
               ||||||||||||||||||||
Sbjct: 4909721 caatatcctcaacaacagca 4909740
to top
>ref|XM_611761.2| PREDICTED: Bos taurus similar to CG2747-PB, isoform B, transcript
           variant 1 (LOC540503), mRNA
          Length = 2504

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 actgatgccaaaacaagcaa 244
           ||||||||||||||||||||
Sbjct: 842 actgatgccaaaacaagcaa 861
to top
>ref|XM_879730.1| PREDICTED: Bos taurus similar to CG2747-PB, isoform B, transcript
           variant 2 (LOC540503), mRNA
          Length = 1855

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 actgatgccaaaacaagcaa 244
           ||||||||||||||||||||
Sbjct: 842 actgatgccaaaacaagcaa 861
to top
>gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome
          Length = 5228663

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 495     caatatcctcaacaacagca 514
               ||||||||||||||||||||
Sbjct: 4910932 caatatcctcaacaacagca 4910951
to top
>gb|AY810036.1| Schistosoma japonicum SJCHGC05583 protein mRNA, partial cds
          Length = 1669

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 495 caatatcctcaacaacagca 514
           ||||||||||||||||||||
Sbjct: 518 caatatcctcaacaacagca 537
to top
>gb|AC146174.2| Pan troglodytes BAC clone CH251-549F12 from Y, complete sequence
          Length = 191823

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 152    caaggaaaacgaagactcaaaaaa 175
              |||||||||| |||||||||||||
Sbjct: 115036 caaggaaaacaaagactcaaaaaa 115059
to top
>gb|CP000001.1| Bacillus cereus E33L, complete genome
          Length = 5300915

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 495     caatatcctcaacaacagca 514
               ||||||||||||||||||||
Sbjct: 4970704 caatatcctcaacaacagca 4970723
to top
>emb|AL353150.25| Human DNA sequence from clone RP11-82L18 on chromosome 9 Contains the
             3' end of a novel gene (SHC3) and a novel gene, complete
             sequence
          Length = 113051

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 513   cagtggagccatcaaggtgt 532
             ||||||||||||||||||||
Sbjct: 35500 cagtggagccatcaaggtgt 35481
to top
>emb|AL121911.15|HSDJ989D7 Human DNA sequence from clone RP5-989D7 on chromosome 20 Contains part
             of a novel gene, complete sequence
          Length = 119790

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 496   aatatcctcaacaacagcag 515
             ||||||||||||||||||||
Sbjct: 55366 aatatcctcaacaacagcag 55347
to top
>emb|AL050344.31|HSJ799D16 Human DNA sequence from clone RP4-799D16 on chromosome 1p34.3-36.1
             Contains the 3' end of a novel gene, complete sequence
          Length = 127109

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 238   caagcaatcatcttgccttt 257
             ||||||||||||||||||||
Sbjct: 83365 caagcaatcatcttgccttt 83384
to top
>gb|AF533976.1| Oreochromis niloticus unknown sequence
          Length = 99935

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 251  tgcctttgcanactgtaaacatg 273
            |||||||||| ||||||||||||
Sbjct: 8273 tgcctttgcatactgtaaacatg 8295
to top
>emb|Z98981.3|SPAC6F6 S.pombe chromosome I cosmid c6F6
          Length = 43307

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 102   ttgcctaccattattgacagcttt 125
             ||||||||| ||||||||||||||
Sbjct: 16772 ttgcctacccttattgacagcttt 16749
to top
>gb|AC078925.18| Homo sapiens 12q BAC RP11-76C10 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 153284

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 238   caagcaatcatcttgccttt 257
             ||||||||||||||||||||
Sbjct: 96885 caagcaatcatcttgccttt 96904
to top
>dbj|BS000614.1| Pan troglodytes chromosome Y clone:PTBY-009K01, complete sequences
          Length = 63466

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 152   caaggaaaacgaagactcaaaaaa 175
             |||||||||| |||||||||||||
Sbjct: 39928 caaggaaaacaaagactcaaaaaa 39905
to top
>dbj|BS000556.1| Pan troglodytes chromosome Y clone:PTB-461C11, complete sequences
          Length = 148964

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 152    caaggaaaacgaagactcaaaaaa 175
              |||||||||| |||||||||||||
Sbjct: 134564 caaggaaaacaaagactcaaaaaa 134541
to top
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 152      caaggaaaacgaagactcaaaaaa 175
                |||||||||| |||||||||||||
Sbjct: 23749871 caaggaaaacaaagactcaaaaaa 23749894
to top
>ref|NM_001019329.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPAC6F6.06c),
            partial mRNA
          Length = 3468

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 102  ttgcctaccattattgacagcttt 125
            ||||||||| ||||||||||||||
Sbjct: 3171 ttgcctacccttattgacagcttt 3194
to top
>gb|AC006040.3|AC006040 Homo sapiens BAC clone RP11-400O10 from Y, complete sequence
          Length = 186504

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 152    caaggaaaacgaagactcaaaaaa 175
              |||||||||| |||||||||||||
Sbjct: 121897 caaggaaaacaaagactcaaaaaa 121874
to top
>emb|CR456625.13| Zebrafish DNA sequence from clone DKEY-76G24 in linkage group 12,
             complete sequence
          Length = 228447

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 64    tgacaattcatcatcatcat 83
             ||||||||||||||||||||
Sbjct: 65825 tgacaattcatcatcatcat 65844
to top
>emb|CT009515.16| Mouse DNA sequence from clone RP23-117H6 on chromosome 14, complete
              sequence
          Length = 197196

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 415    agtgctgggatcaactgcat 434
              ||||||||||||||||||||
Sbjct: 162210 agtgctgggatcaactgcat 162191
to top
>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome
          Length = 5411809

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 495     caatatcctcaacaacagca 514
               ||||||||||||||||||||
Sbjct: 5088333 caatatcctcaacaacagca 5088352
to top
>gb|AE016879.1| Bacillus anthracis str. Ames, complete genome
          Length = 5227293

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 495     caatatcctcaacaacagca 514
               ||||||||||||||||||||
Sbjct: 4909595 caatatcctcaacaacagca 4909614
to top
>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome
          Length = 5224283

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 495     caatatcctcaacaacagca 514
               ||||||||||||||||||||
Sbjct: 4882655 caatatcctcaacaacagca 4882674
to top
>gb|AF041427.1|AF041427 Homo sapiens ribosomal protein s4 Y isoform gene, complete cds
          Length = 45859

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 152   caaggaaaacgaagactcaaaaaa 175
             |||||||||| |||||||||||||
Sbjct: 24173 caaggaaaacaaagactcaaaaaa 24150


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,632,745
Number of Sequences: 3902068
Number of extensions: 5632745
Number of successful extensions: 100672
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 100308
Number of HSP's gapped (non-prelim): 360
length of query: 568
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 545
effective length of database: 17,143,297,704
effective search space: 9343097248680
effective search space used: 9343097248680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top