ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags4c06 |
|---|---|
| Clone Library Name | barley_pub |
>RTN4_MOUSE (Q99P72) Reticulon-4 (Neurite outgrowth inhibitor) (Nogo protein)| Length = 1162 Score = 56.6 bits (135), Expect = 8e-08 Identities = 34/105 (32%), Positives = 53/105 (50%) Frame = -3 Query: 691 EVIIPEDLVVNIALSTRHEINRAFANLRQIALGRDIKKFLIVIAGLWLLSILGSCCNFLT 512 EV I E+LV + S +N LR++ L D+ L +W+ + +G+ N LT Sbjct: 1050 EVAISEELVQKYSNSALGHVNSTIKELRRLFLVDDLVDSLKFAVLMWVFTYVGALFNGLT 1109 Query: 511 LFYIVFVVLHTVPVIYEKYEDQIDTYGEKGWIEVKKQYAVFDAKV 377 L + + L ++PVIYE+++ QID Y VK A AK+ Sbjct: 1110 LLILALISLFSIPVIYERHQAQIDHYLGLANKSVKDAMAKIQAKI 1154
>RTN4_RAT (Q9JK11) Reticulon-4 (Neurite outgrowth inhibitor) (Nogo protein)| (Foocen) (Glut4 vesicle 20 kDa protein) Length = 1163 Score = 56.2 bits (134), Expect = 1e-07 Identities = 34/105 (32%), Positives = 53/105 (50%) Frame = -3 Query: 691 EVIIPEDLVVNIALSTRHEINRAFANLRQIALGRDIKKFLIVIAGLWLLSILGSCCNFLT 512 EV I E+LV + S +N LR++ L D+ L +W+ + +G+ N LT Sbjct: 1051 EVAISEELVQKYSNSALGHVNSTIKELRRLFLVDDLVDSLKFAVLMWVFTYVGALFNGLT 1110 Query: 511 LFYIVFVVLHTVPVIYEKYEDQIDTYGEKGWIEVKKQYAVFDAKV 377 L + + L ++PVIYE+++ QID Y VK A AK+ Sbjct: 1111 LLILALISLFSIPVIYERHQVQIDHYLGLANKSVKDAMAKIQAKI 1155
>RTN4_HUMAN (Q9NQC3) Reticulon-4 (Neurite outgrowth inhibitor) (Nogo protein)| (Foocen) (Neuroendocrine-specific protein) (NSP) (Neuroendocrine-specific protein C homolog) (RTN-x) (Reticulon-5) Length = 1192 Score = 56.2 bits (134), Expect = 1e-07 Identities = 35/105 (33%), Positives = 53/105 (50%) Frame = -3 Query: 691 EVIIPEDLVVNIALSTRHEINRAFANLRQIALGRDIKKFLIVIAGLWLLSILGSCCNFLT 512 EV I E+LV + S +N LR++ L D+ L +W+ + +G+ N LT Sbjct: 1080 EVAISEELVQKYSNSALGHVNCTIKELRRLFLVDDLVDSLKFAVLMWVFTYVGALFNGLT 1139 Query: 511 LFYIVFVVLHTVPVIYEKYEDQIDTYGEKGWIEVKKQYAVFDAKV 377 L + + L +VPVIYE+++ QID Y VK A AK+ Sbjct: 1140 LLILALISLFSVPVIYERHQAQIDHYLGLANKNVKDAMAKIQAKI 1184
>RTN1_PANTR (Q5IS59) Reticulon-1| Length = 776 Score = 50.4 bits (119), Expect = 6e-06 Identities = 31/110 (28%), Positives = 56/110 (50%) Frame = -3 Query: 691 EVIIPEDLVVNIALSTRHEINRAFANLRQIALGRDIKKFLIVIAGLWLLSILGSCCNFLT 512 E+ + ++ + + +N LR++ L +D+ L +WLL+ +G+ N LT Sbjct: 664 EITLSQEQIQKYTDCLQFYVNSTLKELRRLFLVQDLVDSLKFAVLMWLLTYVGALFNGLT 723 Query: 511 LFYIVFVVLHTVPVIYEKYEDQIDTYGEKGWIEVKKQYAVFDAKVLSKVP 362 L + V + T+PV+Y K++ QID Y G + V AK+ +K+P Sbjct: 724 LLLMAVVSMFTLPVVYVKHQAQIDQY--LGLVRTHINAVV--AKIQAKIP 769
>RTN1_HUMAN (Q16799) Reticulon-1 (Neuroendocrine-specific protein)| Length = 776 Score = 50.4 bits (119), Expect = 6e-06 Identities = 31/110 (28%), Positives = 56/110 (50%) Frame = -3 Query: 691 EVIIPEDLVVNIALSTRHEINRAFANLRQIALGRDIKKFLIVIAGLWLLSILGSCCNFLT 512 E+ + ++ + + +N LR++ L +D+ L +WLL+ +G+ N LT Sbjct: 664 EITLSQEQIQKYTDCLQFYVNSTLKELRRLFLVQDLVDSLKFAVLMWLLTYVGALFNGLT 723 Query: 511 LFYIVFVVLHTVPVIYEKYEDQIDTYGEKGWIEVKKQYAVFDAKVLSKVP 362 L + V + T+PV+Y K++ QID Y G + V AK+ +K+P Sbjct: 724 LLLMAVVSMFTLPVVYVKHQAQIDQY--LGLVRTHINAVV--AKIQAKIP 769
>RTN3_HUMAN (O95197) Reticulon-3 (Neuroendocrine-specific protein-like 2)| (NSP-like protein II) (NSPLII) Length = 236 Score = 50.1 bits (118), Expect = 7e-06 Identities = 23/67 (34%), Positives = 42/67 (62%) Frame = -3 Query: 634 INRAFANLRQIALGRDIKKFLIVIAGLWLLSILGSCCNFLTLFYIVFVVLHTVPVIYEKY 455 INRA + ++ L D+ L + +WL++ +G+ N +TL + +++ +VP++YEKY Sbjct: 142 INRALKLIIRLFLVEDLVDSLKLAVFMWLMTYVGAVFNGITLLILAELLIFSVPIVYEKY 201 Query: 454 EDQIDTY 434 + QID Y Sbjct: 202 KTQIDHY 208
>RTN1_MOUSE (Q8K0T0) Reticulon-1 (Neuroendocrine-specific protein)| Length = 780 Score = 49.3 bits (116), Expect = 1e-05 Identities = 29/91 (31%), Positives = 49/91 (53%) Frame = -3 Query: 634 INRAFANLRQIALGRDIKKFLIVIAGLWLLSILGSCCNFLTLFYIVFVVLHTVPVIYEKY 455 +N LR++ L +D+ L +WLL+ +G+ N LTL + V + T+PV+Y K+ Sbjct: 687 VNSTLKELRRLFLVQDLVDSLKFAVLMWLLTYVGALFNGLTLLLMAVVSMFTLPVVYVKH 746 Query: 454 EDQIDTYGEKGWIEVKKQYAVFDAKVLSKVP 362 + Q+D Y G + V AK+ +K+P Sbjct: 747 QAQVDQY--LGLVRTHINTVV--AKIQAKIP 773
>RTN1_RAT (Q64548) Reticulon-1 (Neuroendocrine-specific protein) (S-rex)| Length = 777 Score = 49.3 bits (116), Expect = 1e-05 Identities = 29/91 (31%), Positives = 49/91 (53%) Frame = -3 Query: 634 INRAFANLRQIALGRDIKKFLIVIAGLWLLSILGSCCNFLTLFYIVFVVLHTVPVIYEKY 455 +N LR++ L +D+ L +WLL+ +G+ N LTL + V + T+PV+Y K+ Sbjct: 684 VNSTLKELRRLFLVQDLVDSLKFAVLMWLLTYVGALFNGLTLLLMAVVSMFTLPVVYVKH 743 Query: 454 EDQIDTYGEKGWIEVKKQYAVFDAKVLSKVP 362 + Q+D Y G + V AK+ +K+P Sbjct: 744 QAQVDQY--LGLVRTHINTVV--AKIQAKIP 770
>RTN3_MOUSE (Q9ES97) Reticulon-3| Length = 237 Score = 48.1 bits (113), Expect = 3e-05 Identities = 21/67 (31%), Positives = 42/67 (62%) Frame = -3 Query: 634 INRAFANLRQIALGRDIKKFLIVIAGLWLLSILGSCCNFLTLFYIVFVVLHTVPVIYEKY 455 +N+A + ++ L D+ L + +WL++ +G+ N +TL + +++ +VP++YEKY Sbjct: 143 VNKALKLIIRLFLVEDLVDSLKLAVFMWLMTYVGAVFNGITLLILAELLVFSVPIVYEKY 202 Query: 454 EDQIDTY 434 + QID Y Sbjct: 203 KTQIDHY 209
>RTN2_MOUSE (O70622) Reticulon-2 (Neuroendocrine-specific protein-like 1)| (NSP-like protein 1) (NSPLI) Length = 471 Score = 42.7 bits (99), Expect = 0.001 Identities = 29/93 (31%), Positives = 48/93 (51%) Frame = -3 Query: 640 HEINRAFANLRQIALGRDIKKFLIVIAGLWLLSILGSCCNFLTLFYIVFVVLHTVPVIYE 461 H ++ A LR L D+ L + ++L+ +G+ N LTL + V L TVP++Y Sbjct: 365 HVVSTA-TQLRHFFLVEDLVDSLKLALLFYILTFVGAIFNGLTLVILGVVALFTVPLLYR 423 Query: 460 KYEDQIDTYGEKGWIEVKKQYAVFDAKVLSKVP 362 +++ QID Y V Q + AK+ +K+P Sbjct: 424 QHQAQIDQYVGL----VTNQLSHIKAKIRAKIP 452
>RTN2_HUMAN (O75298) Reticulon-2 (Neuroendocrine-specific protein-like 1)| (NSP-like protein 1) (NSPLI) Length = 545 Score = 41.6 bits (96), Expect = 0.003 Identities = 26/88 (29%), Positives = 45/88 (51%) Frame = -3 Query: 625 AFANLRQIALGRDIKKFLIVIAGLWLLSILGSCCNFLTLFYIVFVVLHTVPVIYEKYEDQ 446 A LR L D+ L + ++L+ +G+ N LTL + + L T+P++Y +++ Q Sbjct: 442 AATQLRHFFLVEDLVDSLKLALLFYILTFVGAIFNGLTLLILGVIGLFTIPLLYRQHQAQ 501 Query: 445 IDTYGEKGWIEVKKQYAVFDAKVLSKVP 362 ID Y V Q + AK+ +K+P Sbjct: 502 IDQYVGL----VTNQLSHIKAKIRAKIP 525
>RTN1_YEAST (Q04947) Reticulon-like protein 1| Length = 295 Score = 33.9 bits (76), Expect = 0.54 Identities = 20/73 (27%), Positives = 36/73 (49%) Frame = -3 Query: 619 ANLRQIALGRDIKKFLIVIAGLWLLSILGSCCNFLTLFYIVFVVLHTVPVIYEKYEDQID 440 A++R+ + K L+LL S + T+ ++ + T+PVIY Y+ +ID Sbjct: 113 AHIRKTVFAQVPKHTFKTAVALFLLHKFFSWFSIWTIVFVADIFTFTLPVIYHSYKHEID 172 Query: 439 TYGEKGWIEVKKQ 401 +G +E+ KQ Sbjct: 173 ATVAQG-VEISKQ 184 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 100,174,215 Number of Sequences: 219361 Number of extensions: 1961436 Number of successful extensions: 4912 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 4814 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4912 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7649585595 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
