| Clone Name | rbags4c06 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_188559.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 840 Score = 373 bits (188), Expect = e-100 Identities = 350/404 (86%) Strand = Plus / Minus Query: 332 ctagttcttcttgtctttcaaggggcccctcggcactttgctcagaaccttggcatcaaa 391 ||||| |||||||||||||||||||||||| || ||||| ||||| ||||| ||||| | Sbjct: 840 ctagtgcttcttgtctttcaaggggccccttggtactttactcaggaccttagcatcgag 781 Query: 392 cacagcatactgtttcttaacctcaatccaccccttctcaccataggtatcaatctgatc 451 |||||||||||||||||||| ||||| |||||||||||||||||| | ||||||||||| Sbjct: 780 cacagcatactgtttcttaatctcaacccaccccttctcaccatatgagtcaatctgatc 721 Query: 452 ctcatacttctcgtagattactggaactgtgtgaagaaccacaaaaacaatgtagaacag 511 ||||||||||| || | | ||| |||||||| || |||||||| ||||| || | || Sbjct: 720 ttcatacttctcatacagaattgggactgtgtgcagcaccacaaacacaatataaaccaa 661 Query: 512 tgtcaagaagttgcagcaactcccaagaatggaaagcagccatagaccagcaatcacaat 571 ||||||||||||||||| || ||||||| ||||||| ||| || |||||||||||||| Sbjct: 660 ggtcaagaagttgcagcagcttccaagaacagaaagcaaccaaaggccagcaatcacaat 601 Query: 572 aaggaacttctttatgtcacgcccaagagcaatctgacgaaggtttgcgaaggctctgtt 631 |||||||||||| ||||| || |||||||||||||||||||| || || ||||| ||||| Sbjct: 600 aaggaacttcttgatgtcccggccaagagcaatctgacgaagattggcaaaggccctgtt 541 Query: 632 gatctcatgacgtgtagagagcgcaatgttgacaaccaaatcttcaggaatgatcacctc 691 |||||||| ||||||||| || ||||||||||||||||||||||| ||||| |||||||| Sbjct: 540 gatctcataacgtgtagatagagcaatgttgacaaccaaatcttctggaataatcacctc 481 Query: 692 gggaatccttgggggagacttgttgatgaatgacgaggcattag 735 || |||| |||||||||||||| || ||||| |||||||||| Sbjct: 480 tgggatccgcgggggagacttgttaataaatgatgaggcattag 437
>dbj|AK059314.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-G12, full insert sequence Length = 834 Score = 373 bits (188), Expect = e-100 Identities = 350/404 (86%) Strand = Plus / Minus Query: 332 ctagttcttcttgtctttcaaggggcccctcggcactttgctcagaaccttggcatcaaa 391 ||||| |||||||||||||||||||||||| || ||||| ||||| ||||| ||||| | Sbjct: 539 ctagtgcttcttgtctttcaaggggccccttggtactttactcaggaccttagcatcgag 480 Query: 392 cacagcatactgtttcttaacctcaatccaccccttctcaccataggtatcaatctgatc 451 |||||||||||||||||||| ||||| |||||||||||||||||| | ||||||||||| Sbjct: 479 cacagcatactgtttcttaatctcaacccaccccttctcaccatatgagtcaatctgatc 420 Query: 452 ctcatacttctcgtagattactggaactgtgtgaagaaccacaaaaacaatgtagaacag 511 ||||||||||| || | | ||| |||||||| || |||||||| ||||| || | || Sbjct: 419 ttcatacttctcatacagaattgggactgtgtgcagcaccacaaacacaatataaaccaa 360 Query: 512 tgtcaagaagttgcagcaactcccaagaatggaaagcagccatagaccagcaatcacaat 571 ||||||||||||||||| || ||||||| ||||||| ||| || |||||||||||||| Sbjct: 359 ggtcaagaagttgcagcagcttccaagaacagaaagcaaccaaaggccagcaatcacaat 300 Query: 572 aaggaacttctttatgtcacgcccaagagcaatctgacgaaggtttgcgaaggctctgtt 631 |||||||||||| ||||| || |||||||||||||||||||| || || ||||| ||||| Sbjct: 299 aaggaacttcttgatgtcccggccaagagcaatctgacgaagattggcaaaggccctgtt 240 Query: 632 gatctcatgacgtgtagagagcgcaatgttgacaaccaaatcttcaggaatgatcacctc 691 |||||||| ||||||||| || ||||||||||||||||||||||| ||||| |||||||| Sbjct: 239 gatctcataacgtgtagatagagcaatgttgacaaccaaatcttctggaataatcacctc 180 Query: 692 gggaatccttgggggagacttgttgatgaatgacgaggcattag 735 || |||| |||||||||||||| || ||||| |||||||||| Sbjct: 179 tgggatccgcgggggagacttgttaataaatgatgaggcattag 136 Score = 50.1 bits (25), Expect = 0.010 Identities = 31/33 (93%) Strand = Plus / Minus Query: 95 catgcgacatttaacagatcaaaaatcaaacag 127 |||||||||| | |||||||||||||||||||| Sbjct: 756 catgcgacatcttacagatcaaaaatcaaacag 724
>gb|AY596554.1| Saccharum officinarum clone SCRFLR1012E12, complete sequence Length = 1197 Score = 264 bits (133), Expect = 4e-67 Identities = 322/385 (83%) Strand = Plus / Plus Query: 330 ttctagttcttcttgtctttcaaggggcccctcggcactttgctcagaaccttggcatca 389 ||||||| ||||||||||||| ||| ||||| || ||||||||||||||||| ||||| Sbjct: 312 ttctagtgcttcttgtctttcgcgggaccccttggtactttgctcagaaccttctcatca 371 Query: 390 aacacagcatactgtttcttaacctcaatccaccccttctcaccataggtatcaatctga 449 ||||| || ||||| ||||||| ||||||||||| ||||| ||||| | ||||||||| Sbjct: 372 aacacggcgtactgcttcttaatttcaatccaccctttctcgccatacgagtcaatctga 431 Query: 450 tcctcatacttctcgtagattactggaactgtgtgaagaaccacaaaaacaatgtagaac 509 ||||| |||||||| || | || || |||||||| || |||||||| |||||||| | | Sbjct: 432 tcctcgtacttctcatacaggacaggtactgtgtgcagcaccacaaagacaatgtaaacc 491 Query: 510 agtgtcaagaagttgcagcaactcccaagaatggaaagcagccatagaccagcaatcaca 569 | | ||||||||||||||| || ||||||| ||||||| ||| | |||||||| || Sbjct: 492 aaggacaagaagttgcagcagcttccaagaacagaaagcaaccaaaacccagcaataacc 551 Query: 570 ataaggaacttctttatgtcacgcccaagagcaatctgacgaaggtttgcgaaggctctg 629 || |||||||||||||| || || |||||||||||||| || || || || ||||| ||| Sbjct: 552 attaggaacttctttatatcccggccaagagcaatctggcggagattggcaaaggccctg 611 Query: 630 ttgatctcatgacgtgtagagagcgcaatgttgacaaccaaatcttcaggaatgatcacc 689 |||||||||| ||| || || ||||||||||||||||| |||||||||||||||| |||| Sbjct: 612 ttgatctcataacgagtggatagcgcaatgttgacaactaaatcttcaggaatgaccacc 671 Query: 690 tcgggaatccttgggggagacttgt 714 || || ||| ||||||||| ||||| Sbjct: 672 tctgggatctttgggggagccttgt 696
>gb|AY103934.1| Zea mays PCO140136 mRNA sequence Length = 1116 Score = 262 bits (132), Expect = 1e-66 Identities = 321/384 (83%) Strand = Plus / Minus Query: 331 tctagttcttcttgtctttcaaggggcccctcggcactttgctcagaaccttggcatcaa 390 |||||| ||||||||||||| || ||||| || ||||||||||||||||| |||| | Sbjct: 907 tctagtgcttcttgtctttcgcaggacccctgggtactttgctcagaaccttctcatcga 848 Query: 391 acacagcatactgtttcttaacctcaatccaccccttctcaccataggtatcaatctgat 450 |||| |||||||| ||||||| |||| |||||||||||| ||||| | |||||||||| Sbjct: 847 acacggcatactgcttcttaatttcaacccaccccttctcgccatacgagtcaatctgat 788 Query: 451 cctcatacttctcgtagattactggaactgtgtgaagaaccacaaaaacaatgtagaaca 510 |||| ||||||||||| | || || |||||||| || |||||||| |||||||| | | Sbjct: 787 cctcgtacttctcgtacaggacaggtactgtgtgcagcaccacaaagacaatgtaaacta 728 Query: 511 gtgtcaagaagttgcagcaactcccaagaatggaaagcagccatagaccagcaatcacaa 570 ||||||||||||||||| || ||||||| ||||||| ||| | |||||||| || | Sbjct: 727 aggtcaagaagttgcagcagcttccaagaacagaaagcaaccaaaacccagcaataacca 668 Query: 571 taaggaacttctttatgtcacgcccaagagcaatctgacgaaggtttgcgaaggctctgt 630 | ||||||||||||| ||| || |||||||||||||| || || || || |||||||||| Sbjct: 667 ttaggaacttctttaggtcccggccaagagcaatctggcggagattggcaaaggctctgt 608 Query: 631 tgatctcatgacgtgtagagagcgcaatgttgacaaccaaatcttcaggaatgatcacct 690 ||||||| | ||| || || ||||||||||||||||| |||||||||||||||||||||| Sbjct: 607 tgatctcgtaacgagtggatagcgcaatgttgacaactaaatcttcaggaatgatcacct 548 Query: 691 cgggaatccttgggggagacttgt 714 | || ||| |||| |||| ||||| Sbjct: 547 ctgggatctttggtggagccttgt 524
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 159 bits (80), Expect = 2e-35 Identities = 128/144 (88%) Strand = Plus / Minus Query: 567 acaataaggaacttctttatgtcacgcccaagagcaatctgacgaaggtttgcgaaggct 626 ||||||||||||||||| ||||| || |||||||||||||||||||| || || ||||| Sbjct: 6968367 acaataaggaacttcttgatgtcccggccaagagcaatctgacgaagattggcaaaggcc 6968308 Query: 627 ctgttgatctcatgacgtgtagagagcgcaatgttgacaaccaaatcttcaggaatgatc 686 ||||||||||||| ||||||||| || ||||||||||||||||||||||| ||||| ||| Sbjct: 6968307 ctgttgatctcataacgtgtagatagagcaatgttgacaaccaaatcttctggaataatc 6968248 Query: 687 acctcgggaatccttgggggagac 710 ||||| || |||| ||||||||| Sbjct: 6968247 acctctgggatccgcgggggagac 6968224 Score = 153 bits (77), Expect = 1e-33 Identities = 143/165 (86%) Strand = Plus / Minus Query: 332 ctagttcttcttgtctttcaaggggcccctcggcactttgctcagaaccttggcatcaaa 391 ||||| |||||||||||||||||||||||| || ||||| ||||| ||||| ||||| | Sbjct: 6968783 ctagtgcttcttgtctttcaaggggccccttggtactttactcaggaccttagcatcgag 6968724 Query: 392 cacagcatactgtttcttaacctcaatccaccccttctcaccataggtatcaatctgatc 451 |||||||||||||||||||| ||||| |||||||||||||||||| | ||||||||||| Sbjct: 6968723 cacagcatactgtttcttaatctcaacccaccccttctcaccatatgagtcaatctgatc 6968664 Query: 452 ctcatacttctcgtagattactggaactgtgtgaagaaccacaaa 496 ||||||||||| || | | ||| |||||||| || |||||||| Sbjct: 6968663 ttcatacttctcatacagaattgggactgtgtgcagcaccacaaa 6968619 Score = 56.0 bits (28), Expect = 2e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 513 gtcaagaagttgcagcaactcccaagaatggaaagcagccatagaccagcaatcac 568 ||||||||||||||||| || ||||||| ||||||| ||| || ||||||||||| Sbjct: 6968503 gtcaagaagttgcagcagcttccaagaacagaaagcaaccaaaggccagcaatcac 6968448 Score = 50.1 bits (25), Expect = 0.010 Identities = 31/33 (93%) Strand = Plus / Minus Query: 95 catgcgacatttaacagatcaaaaatcaaacag 127 |||||||||| | |||||||||||||||||||| Sbjct: 6969000 catgcgacatcttacagatcaaaaatcaaacag 6968968 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 51 ttgcagcaatgcaagtagcaa 71 ||||||||||||||||||||| Sbjct: 2168422 ttgcagcaatgcaagtagcaa 2168442
>dbj|AP002902.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0492F05 Length = 159242 Score = 159 bits (80), Expect = 2e-35 Identities = 128/144 (88%) Strand = Plus / Minus Query: 567 acaataaggaacttctttatgtcacgcccaagagcaatctgacgaaggtttgcgaaggct 626 ||||||||||||||||| ||||| || |||||||||||||||||||| || || ||||| Sbjct: 136091 acaataaggaacttcttgatgtcccggccaagagcaatctgacgaagattggcaaaggcc 136032 Query: 627 ctgttgatctcatgacgtgtagagagcgcaatgttgacaaccaaatcttcaggaatgatc 686 ||||||||||||| ||||||||| || ||||||||||||||||||||||| ||||| ||| Sbjct: 136031 ctgttgatctcataacgtgtagatagagcaatgttgacaaccaaatcttctggaataatc 135972 Query: 687 acctcgggaatccttgggggagac 710 ||||| || |||| ||||||||| Sbjct: 135971 acctctgggatccgcgggggagac 135948 Score = 153 bits (77), Expect = 1e-33 Identities = 143/165 (86%) Strand = Plus / Minus Query: 332 ctagttcttcttgtctttcaaggggcccctcggcactttgctcagaaccttggcatcaaa 391 ||||| |||||||||||||||||||||||| || ||||| ||||| ||||| ||||| | Sbjct: 136507 ctagtgcttcttgtctttcaaggggccccttggtactttactcaggaccttagcatcgag 136448 Query: 392 cacagcatactgtttcttaacctcaatccaccccttctcaccataggtatcaatctgatc 451 |||||||||||||||||||| ||||| |||||||||||||||||| | ||||||||||| Sbjct: 136447 cacagcatactgtttcttaatctcaacccaccccttctcaccatatgagtcaatctgatc 136388 Query: 452 ctcatacttctcgtagattactggaactgtgtgaagaaccacaaa 496 ||||||||||| || | | ||| |||||||| || |||||||| Sbjct: 136387 ttcatacttctcatacagaattgggactgtgtgcagcaccacaaa 136343 Score = 56.0 bits (28), Expect = 2e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 513 gtcaagaagttgcagcaactcccaagaatggaaagcagccatagaccagcaatcac 568 ||||||||||||||||| || ||||||| ||||||| ||| || ||||||||||| Sbjct: 136227 gtcaagaagttgcagcagcttccaagaacagaaagcaaccaaaggccagcaatcac 136172 Score = 50.1 bits (25), Expect = 0.010 Identities = 31/33 (93%) Strand = Plus / Minus Query: 95 catgcgacatttaacagatcaaaaatcaaacag 127 |||||||||| | |||||||||||||||||||| Sbjct: 136724 catgcgacatcttacagatcaaaaatcaaacag 136692
>dbj|AP002900.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0443E07 Length = 159440 Score = 159 bits (80), Expect = 2e-35 Identities = 128/144 (88%) Strand = Plus / Minus Query: 567 acaataaggaacttctttatgtcacgcccaagagcaatctgacgaaggtttgcgaaggct 626 ||||||||||||||||| ||||| || |||||||||||||||||||| || || ||||| Sbjct: 90185 acaataaggaacttcttgatgtcccggccaagagcaatctgacgaagattggcaaaggcc 90126 Query: 627 ctgttgatctcatgacgtgtagagagcgcaatgttgacaaccaaatcttcaggaatgatc 686 ||||||||||||| ||||||||| || ||||||||||||||||||||||| ||||| ||| Sbjct: 90125 ctgttgatctcataacgtgtagatagagcaatgttgacaaccaaatcttctggaataatc 90066 Query: 687 acctcgggaatccttgggggagac 710 ||||| || |||| ||||||||| Sbjct: 90065 acctctgggatccgcgggggagac 90042 Score = 153 bits (77), Expect = 1e-33 Identities = 143/165 (86%) Strand = Plus / Minus Query: 332 ctagttcttcttgtctttcaaggggcccctcggcactttgctcagaaccttggcatcaaa 391 ||||| |||||||||||||||||||||||| || ||||| ||||| ||||| ||||| | Sbjct: 90601 ctagtgcttcttgtctttcaaggggccccttggtactttactcaggaccttagcatcgag 90542 Query: 392 cacagcatactgtttcttaacctcaatccaccccttctcaccataggtatcaatctgatc 451 |||||||||||||||||||| ||||| |||||||||||||||||| | ||||||||||| Sbjct: 90541 cacagcatactgtttcttaatctcaacccaccccttctcaccatatgagtcaatctgatc 90482 Query: 452 ctcatacttctcgtagattactggaactgtgtgaagaaccacaaa 496 ||||||||||| || | | ||| |||||||| || |||||||| Sbjct: 90481 ttcatacttctcatacagaattgggactgtgtgcagcaccacaaa 90437 Score = 56.0 bits (28), Expect = 2e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 513 gtcaagaagttgcagcaactcccaagaatggaaagcagccatagaccagcaatcac 568 ||||||||||||||||| || ||||||| ||||||| ||| || ||||||||||| Sbjct: 90321 gtcaagaagttgcagcagcttccaagaacagaaagcaaccaaaggccagcaatcac 90266 Score = 50.1 bits (25), Expect = 0.010 Identities = 31/33 (93%) Strand = Plus / Minus Query: 95 catgcgacatttaacagatcaaaaatcaaacag 127 |||||||||| | |||||||||||||||||||| Sbjct: 90818 catgcgacatcttacagatcaaaaatcaaacag 90786
>gb|AY112460.1| Zea mays CL9078_1 mRNA sequence Length = 686 Score = 83.8 bits (42), Expect = 7e-13 Identities = 81/94 (86%) Strand = Plus / Plus Query: 490 ccacaaaaacaatgtagaacagtgtcaagaagttgcagcaactcccaagaatggaaagca 549 ||||||| ||||| ||||||||||||| |||||||||||| ||||| |||| ||||| | Sbjct: 476 ccacaaagacaatatagaacagtgtcaggaagttgcagcagctcccgagaactgaaagaa 535 Query: 550 gccatagaccagcaatcacaataaggaacttctt 583 |||| ||||| ||||| ||||| ||||| ||||| Sbjct: 536 gccagagacctgcaataacaattaggaatttctt 569
>ref|NM_191117.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 762 Score = 63.9 bits (32), Expect = 7e-07 Identities = 128/160 (80%) Strand = Plus / Minus Query: 424 ccttctcaccataggtatcaatctgatcctcatacttctcgtagattactggaactgtgt 483 ||||||||||| | | ||||| || |||||||||||||| || | |||||| || |||| Sbjct: 670 ccttctcaccaaaagcatcaaccttgtcctcatacttctcatacagtactggcacagtgt 611 Query: 484 gaagaaccacaaaaacaatgtagaacagtgtcaagaagttgcagcaactcccaagaatgg 543 || |||||||||| |||||||||| ||||| ||||| |||| || ||||||| | Sbjct: 610 agagcgccacaaaaactatgtagaacaaagtcaaaaagttacagctgctaccaagaactg 551 Query: 544 aaagcagccatagaccagcaatcacaataaggaacttctt 583 | || | ||| || ||||| |||||||| ||||||||||| Sbjct: 550 acagaatccagagtccagcgatcacaatgaggaacttctt 511
>dbj|AK121245.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099G09, full insert sequence Length = 1325 Score = 63.9 bits (32), Expect = 7e-07 Identities = 128/160 (80%) Strand = Plus / Minus Query: 424 ccttctcaccataggtatcaatctgatcctcatacttctcgtagattactggaactgtgt 483 ||||||||||| | | ||||| || |||||||||||||| || | |||||| || |||| Sbjct: 804 ccttctcaccaaaagcatcaaccttgtcctcatacttctcatacagtactggcacagtgt 745 Query: 484 gaagaaccacaaaaacaatgtagaacagtgtcaagaagttgcagcaactcccaagaatgg 543 || |||||||||| |||||||||| ||||| ||||| |||| || ||||||| | Sbjct: 744 agagcgccacaaaaactatgtagaacaaagtcaaaaagttacagctgctaccaagaactg 685 Query: 544 aaagcagccatagaccagcaatcacaataaggaacttctt 583 | || | ||| || ||||| |||||||| ||||||||||| Sbjct: 684 acagaatccagagtccagcgatcacaatgaggaacttctt 645
>dbj|AK065226.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002H02, full insert sequence Length = 1181 Score = 63.9 bits (32), Expect = 7e-07 Identities = 128/160 (80%) Strand = Plus / Minus Query: 424 ccttctcaccataggtatcaatctgatcctcatacttctcgtagattactggaactgtgt 483 ||||||||||| | | ||||| || |||||||||||||| || | |||||| || |||| Sbjct: 795 ccttctcaccaaaagcatcaaccttgtcctcatacttctcatacagtactggcacagtgt 736 Query: 484 gaagaaccacaaaaacaatgtagaacagtgtcaagaagttgcagcaactcccaagaatgg 543 || |||||||||| |||||||||| ||||| ||||| |||| || ||||||| | Sbjct: 735 agagcgccacaaaaactatgtagaacaaagtcaaaaagttacagctgctaccaagaactg 676 Query: 544 aaagcagccatagaccagcaatcacaataaggaacttctt 583 | || | ||| || ||||| |||||||| ||||||||||| Sbjct: 675 acagaatccagagtccagcgatcacaatgaggaacttctt 636
>dbj|AK062151.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-H05, full insert sequence Length = 731 Score = 63.9 bits (32), Expect = 7e-07 Identities = 128/160 (80%) Strand = Plus / Minus Query: 424 ccttctcaccataggtatcaatctgatcctcatacttctcgtagattactggaactgtgt 483 ||||||||||| | | ||||| || |||||||||||||| || | |||||| || |||| Sbjct: 315 ccttctcaccaaaagcatcaaccttgtcctcatacttctcatacagtactggcacagtgt 256 Query: 484 gaagaaccacaaaaacaatgtagaacagtgtcaagaagttgcagcaactcccaagaatgg 543 || |||||||||| |||||||||| ||||| ||||| |||| || ||||||| | Sbjct: 255 agagcgccacaaaaactatgtagaacaaagtcaaaaagttacagctgctaccaagaactg 196 Query: 544 aaagcagccatagaccagcaatcacaataaggaacttctt 583 | || | ||| || ||||| |||||||| ||||||||||| Sbjct: 195 acagaatccagagtccagcgatcacaatgaggaacttctt 156
>ref|NM_123524.3| Arabidopsis thaliana unknown protein AT5G41600 mRNA, complete cds Length = 1095 Score = 46.1 bits (23), Expect = 0.16 Identities = 38/43 (88%) Strand = Plus / Minus Query: 502 tgtagaacagtgtcaagaagttgcagcaactcccaagaatgga 544 ||||||||| ||||||||||||| |||| || |||| |||||| Sbjct: 692 tgtagaacaatgtcaagaagttgtagcagctgccaataatgga 650
>gb|AC148655.4| Medicago truncatula clone mth2-61c11, complete sequence Length = 89884 Score = 46.1 bits (23), Expect = 0.16 Identities = 35/39 (89%) Strand = Plus / Minus Query: 371 gctcagaaccttggcatcaaacacagcatactgtttctt 409 ||||| |||||| ||||||| ||| |||||||||||||| Sbjct: 69135 gctcaaaaccttagcatcaagcactgcatactgtttctt 69097
>gb|AY150449.1| Arabidopsis thaliana unknown protein (At5g41600) mRNA, complete cds Length = 805 Score = 46.1 bits (23), Expect = 0.16 Identities = 38/43 (88%) Strand = Plus / Minus Query: 502 tgtagaacagtgtcaagaagttgcagcaactcccaagaatgga 544 ||||||||| ||||||||||||| |||| || |||| |||||| Sbjct: 592 tgtagaacaatgtcaagaagttgtagcagctgccaataatgga 550
>gb|AY035169.1| Arabidopsis thaliana unknown protein (At5g41600) mRNA, complete cds Length = 1061 Score = 46.1 bits (23), Expect = 0.16 Identities = 38/43 (88%) Strand = Plus / Minus Query: 502 tgtagaacagtgtcaagaagttgcagcaactcccaagaatgga 544 ||||||||| ||||||||||||| |||| || |||| |||||| Sbjct: 646 tgtagaacaatgtcaagaagttgtagcagctgccaataatgga 604
>gb|AY057638.1| Arabidopsis thaliana AT5g41600/MBK23_13 mRNA, complete cds Length = 1103 Score = 46.1 bits (23), Expect = 0.16 Identities = 38/43 (88%) Strand = Plus / Minus Query: 502 tgtagaacagtgtcaagaagttgcagcaactcccaagaatgga 544 ||||||||| ||||||||||||| |||| || |||| |||||| Sbjct: 692 tgtagaacaatgtcaagaagttgtagcagctgccaataatgga 650
>dbj|AB005233.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MBK23 Length = 79837 Score = 46.1 bits (23), Expect = 0.16 Identities = 38/43 (88%) Strand = Plus / Minus Query: 502 tgtagaacagtgtcaagaagttgcagcaactcccaagaatgga 544 ||||||||| ||||||||||||| |||| || |||| |||||| Sbjct: 32156 tgtagaacaatgtcaagaagttgtagcagctgccaataatgga 32114
>emb|CT485797.2| Medicago truncatula chromosome 5 clone mth4-11a3, COMPLETE SEQUENCE Length = 211224 Score = 44.1 bits (22), Expect = 0.65 Identities = 28/30 (93%) Strand = Plus / Minus Query: 439 tatcaatctgatcctcatacttctcgtaga 468 ||||||||||||| |||||||| ||||||| Sbjct: 70155 tatcaatctgatcgtcatacttttcgtaga 70126
>gb|AC183547.2| Pan troglodytes BAC clone CH251-213F19 from chromosome 6, complete sequence Length = 190731 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 564 atcacaataaggaacttcttt 584 ||||||||||||||||||||| Sbjct: 79300 atcacaataaggaacttcttt 79280
>emb|AL450324.10| Human DNA sequence from clone RP11-307F22 on chromosome 6, complete sequence Length = 101846 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 564 atcacaataaggaacttcttt 584 ||||||||||||||||||||| Sbjct: 97553 atcacaataaggaacttcttt 97533
>gb|AC006649.1| Caenorhabditis elegans fosmid H01M10, complete sequence Length = 14078 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 22 gagttgataaacatcatcaat 42 ||||||||||||||||||||| Sbjct: 8660 gagttgataaacatcatcaat 8680
>gb|AC183106.3| Pan troglodytes BAC clone CH251-522A15 from chromosome 6, complete sequence Length = 173865 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 564 atcacaataaggaacttcttt 584 ||||||||||||||||||||| Sbjct: 39615 atcacaataaggaacttcttt 39595
>gb|AC182636.3| Pan troglodytes BAC clone CH251-519F5 from chromosome 6, complete sequence Length = 197430 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 564 atcacaataaggaacttcttt 584 ||||||||||||||||||||| Sbjct: 111895 atcacaataaggaacttcttt 111875
>gb|AC012447.8| Homo sapiens BAC clone RP11-204L24 from 2, complete sequence Length = 166305 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 144 gtgctgcctctgcattactgt 164 ||||||||||||||||||||| Sbjct: 126348 gtgctgcctctgcattactgt 126368
>dbj|AP002913.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0480E02 Length = 141862 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 51 ttgcagcaatgcaagtagcaa 71 ||||||||||||||||||||| Sbjct: 89534 ttgcagcaatgcaagtagcaa 89554 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,997,629 Number of Sequences: 3902068 Number of extensions: 5997629 Number of successful extensions: 107129 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 107019 Number of HSP's gapped (non-prelim): 109 length of query: 735 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 712 effective length of database: 17,143,297,704 effective search space: 12206027965248 effective search space used: 12206027965248 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)