ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags3n04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC122143.2| Oryza sativa (japonica cultivar-group) chromosome... 76 1e-10
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 76 1e-10
3gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 76 1e-10
4gb|AC155814.6| Mus musculus BAC clone RP24-137M22 from chromosom... 44 0.49
5gb|AC164611.3| Mus musculus BAC clone RP23-421C2 from chromosome... 44 0.49
6ref|NM_180250.1| Arabidopsis thaliana unknown protein AT3G14120 ... 42 1.9
7ref|NM_112268.2| Arabidopsis thaliana unknown protein AT3G14120 ... 42 1.9
8emb|CR339052.6| Zebrafish DNA sequence from clone CH211-218E6 in... 42 1.9
9gb|AC146224.2| Pan troglodytes BAC clone RP43-27B20 from 7, comp... 42 1.9
10gb|AY139761.1| Arabidopsis thaliana AT3g14120/MAG2_7 mRNA, compl... 42 1.9
11gb|AC118556.2| Homo sapiens chromosome 1 clone RP11-421I6, compl... 42 1.9
12gb|AC099336.2| Homo sapiens chromosome 1 clone RP11-175B9, compl... 42 1.9
13gb|BT006367.1| Arabidopsis thaliana AT3g14120/MAG2_7 gene, compl... 42 1.9
14emb|BX537292.5| Zebrafish DNA sequence from clone CH211-213E17 i... 42 1.9
15emb|BX822747.1|CNS0A4PQ Arabidopsis thaliana Full-length cDNA Co... 42 1.9
16gb|AF324892.1|AF324889S4 Homo sapiens myosin phosphatase target ... 42 1.9
17gb|AC015973.2|AC015973 Homo sapiens BAC clone RP11-366C6 from Y,... 42 1.9
18emb|BX000484.12| Zebrafish DNA sequence from clone CH211-12E1 in... 42 1.9
19gb|AC123917.25| Mus musculus chromosome 15, clone RP23-281P5, co... 42 1.9
20gb|AC130659.11| Mus musculus chromosome 1, clone RP23-326C19, co... 40 7.6
21gb|DQ165379.1| Dendroctonus rufipennis microsatellite 54 sequence 40 7.6
22gb|AC125235.3| Mus musculus BAC clone RP23-23D1 from chromosome ... 40 7.6
23gb|AC162295.3| Mus musculus chromosome 1, clone RP24-232K22, com... 40 7.6
24gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence 40 7.6
25gb|AC112250.4| Homo sapiens BAC clone RP11-710E1 from 4, complet... 40 7.6
26gb|AY643071.1| Capnocytophaga canimorsus strain 24231 RNA polyme... 40 7.6
27gb|AY643069.1| Capnocytophaga canimorsus strain CIP 103936 RNA p... 40 7.6
28dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
29dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
30gb|AC010984.7| Homo sapiens BAC clone RP11-510C1 from 2, complet... 40 7.6
31gb|BC025667.1| Homo sapiens, clone IMAGE:5200887, mRNA 40 7.6
32gb|AC140481.3| Homo sapiens BAC clone RP11-1216L17 from 2, compl... 40 7.6
33gb|AC092602.2| Homo sapiens BAC clone RP11-134G21 from 2, comple... 40 7.6
34gb|AC025423.32| Homo sapiens 12 BAC RP11-611O2 (Roswell Park Can... 40 7.6
35dbj|AP005912.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
36emb|CR385027.12| Zebrafish DNA sequence from clone DKEY-13A17 in... 40 7.6
37emb|AL109985.5|CNS018P2 Human chromosome 14 DNA sequence BAC R-3... 40 7.6
38emb|AL662994.3|OSJN00192 Oryza sativa genomic DNA, chromosome 4,... 40 7.6
39emb|AL662934.3|OSJN00136 Oryza sativa genomic DNA, chromosome 4,... 40 7.6 
>gb|AC122143.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
              OSJNBa0090F16, complete sequence
          Length = 147341

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 56/62 (90%)
 Strand = Plus / Plus

                                                                          
Query: 346    ttcattgtgaagaacgtgccagagacaaaaggcaagaccgtggaagagattcaggcttca 405
              ||||||||||||| ||||||||||||||||||||| ||  |||| ||||||||||| |||
Sbjct: 140781 ttcattgtgaagatcgtgccagagacaaaaggcaaaactctggaggagattcaggcctca 140840

                
Query: 406    at 407
              ||
Sbjct: 140841 at 140842



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 55/63 (87%)
 Strand = Plus / Plus

                                                                          
Query: 453    ctgctcttcctcaagctccattttacatatgaagcactccctctcaaaaatcaagaactc 512
              ||||||||||||||||||||||||| ||| | |||| || |||||||||| || ||| ||
Sbjct: 141641 ctgctcttcctcaagctccattttagataggtagcattctctctcaaaaagcaggaattc 141700

                 
Query: 513    ctg 515
              |||
Sbjct: 141701 ctg 141703



 Score = 44.1 bits (22), Expect = 0.49
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                                
Query: 512    cctgtaactgctgctggctgaacaagtgcatcatcccagaatctgatgaa 561
              |||| |||||||| ||||||||||| ||||| || ||||| || ||||||
Sbjct: 141786 cctgcaactgctgttggctgaacaaatgcattattccagattccgatgaa 141835
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 56/62 (90%)
 Strand = Plus / Minus

                                                                            
Query: 346      ttcattgtgaagaacgtgccagagacaaaaggcaagaccgtggaagagattcaggcttca 405
                ||||||||||||| ||||||||||||||||||||| ||  |||| ||||||||||| |||
Sbjct: 24681707 ttcattgtgaagatcgtgccagagacaaaaggcaaaactctggaggagattcaggcctca 24681648

                  
Query: 406      at 407
                ||
Sbjct: 24681647 at 24681646



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 55/63 (87%)
 Strand = Plus / Minus

                                                                            
Query: 453      ctgctcttcctcaagctccattttacatatgaagcactccctctcaaaaatcaagaactc 512
                ||||||||||||||||||||||||| ||| | |||| || |||||||||| || ||| ||
Sbjct: 24680847 ctgctcttcctcaagctccattttagataggtagcattctctctcaaaaagcaggaattc 24680788

                   
Query: 513      ctg 515
                |||
Sbjct: 24680787 ctg 24680785



 Score = 44.1 bits (22), Expect = 0.49
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                                  
Query: 512      cctgtaactgctgctggctgaacaagtgcatcatcccagaatctgatgaa 561
                |||| |||||||| ||||||||||| ||||| || ||||| || ||||||
Sbjct: 24680702 cctgcaactgctgttggctgaacaaatgcattattccagattccgatgaa 24680653
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 56/62 (90%)
 Strand = Plus / Minus

                                                                            
Query: 346      ttcattgtgaagaacgtgccagagacaaaaggcaagaccgtggaagagattcaggcttca 405
                ||||||||||||| ||||||||||||||||||||| ||  |||| ||||||||||| |||
Sbjct: 24993377 ttcattgtgaagatcgtgccagagacaaaaggcaaaactctggaggagattcaggcctca 24993318

                  
Query: 406      at 407
                ||
Sbjct: 24993317 at 24993316



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 55/63 (87%)
 Strand = Plus / Minus

                                                                            
Query: 453      ctgctcttcctcaagctccattttacatatgaagcactccctctcaaaaatcaagaactc 512
                ||||||||||||||||||||||||| ||| | |||| || |||||||||| || ||| ||
Sbjct: 24992517 ctgctcttcctcaagctccattttagataggtagcattctctctcaaaaagcaggaattc 24992458

                   
Query: 513      ctg 515
                |||
Sbjct: 24992457 ctg 24992455



 Score = 44.1 bits (22), Expect = 0.49
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                                  
Query: 512      cctgtaactgctgctggctgaacaagtgcatcatcccagaatctgatgaa 561
                |||| |||||||| ||||||||||| ||||| || ||||| || ||||||
Sbjct: 24992372 cctgcaactgctgttggctgaacaaatgcattattccagattccgatgaa 24992323
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>gb|AC155814.6| Mus musculus BAC clone RP24-137M22 from chromosome 8, complete sequence
          Length = 191336

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 320   cctctgtttgtgccctggctattctg 345
             ||||||||| ||||||||||||||||
Sbjct: 32847 cctctgtttttgccctggctattctg 32872
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>gb|AC164611.3| Mus musculus BAC clone RP23-421C2 from chromosome 8, complete sequence
          Length = 188068

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 320    cctctgtttgtgccctggctattctg 345
              ||||||||| ||||||||||||||||
Sbjct: 187405 cctctgtttttgccctggctattctg 187430
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>ref|NM_180250.1| Arabidopsis thaliana unknown protein AT3G14120 transcript variant
            AT3G14120.2 mRNA, complete cds
          Length = 3596

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                             
Query: 488  actccctctcaaaaatcaagaactcctgtaactgctgctggctgaacaa 536
            ||||||||||||| | || |||||||||||| || ||| | ||||||||
Sbjct: 3366 actccctctcaaataacatgaactcctgtaattgttgccgactgaacaa 3318
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>ref|NM_112268.2| Arabidopsis thaliana unknown protein AT3G14120 transcript variant
            AT3G14120.1 mRNA, complete cds
          Length = 3668

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                             
Query: 488  actccctctcaaaaatcaagaactcctgtaactgctgctggctgaacaa 536
            ||||||||||||| | || |||||||||||| || ||| | ||||||||
Sbjct: 3438 actccctctcaaataacatgaactcctgtaattgttgccgactgaacaa 3390
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>emb|CR339052.6| Zebrafish DNA sequence from clone CH211-218E6 in linkage group 10,
             complete sequence
          Length = 127879

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 2     acaacaacaaatgcatctact 22
             |||||||||||||||||||||
Sbjct: 79081 acaacaacaaatgcatctact 79101
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>gb|AC146224.2| Pan troglodytes BAC clone RP43-27B20 from 7, complete sequence
          Length = 141824

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 308    catgcttctttgcctctgttt 328
              |||||||||||||||||||||
Sbjct: 117727 catgcttctttgcctctgttt 117707
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>gb|AY139761.1| Arabidopsis thaliana AT3g14120/MAG2_7 mRNA, complete cds
          Length = 3669

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                             
Query: 488  actccctctcaaaaatcaagaactcctgtaactgctgctggctgaacaa 536
            ||||||||||||| | || |||||||||||| || ||| | ||||||||
Sbjct: 3438 actccctctcaaataacatgaactcctgtaattgttgccgactgaacaa 3390
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>gb|AC118556.2| Homo sapiens chromosome 1 clone RP11-421I6, complete sequence
          Length = 9890

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 308  catgcttctttgcctctgttt 328
            |||||||||||||||||||||
Sbjct: 9764 catgcttctttgcctctgttt 9784
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>gb|AC099336.2| Homo sapiens chromosome 1 clone RP11-175B9, complete sequence
          Length = 159838

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 308    catgcttctttgcctctgttt 328
              |||||||||||||||||||||
Sbjct: 159100 catgcttctttgcctctgttt 159080
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>gb|BT006367.1| Arabidopsis thaliana AT3g14120/MAG2_7 gene, complete cds
          Length = 3234

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                             
Query: 488  actccctctcaaaaatcaagaactcctgtaactgctgctggctgaacaa 536
            ||||||||||||| | || |||||||||||| || ||| | ||||||||
Sbjct: 3187 actccctctcaaataacatgaactcctgtaattgttgccgactgaacaa 3139
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>emb|BX537292.5| Zebrafish DNA sequence from clone CH211-213E17 in linkage group 10,
              complete sequence
          Length = 189446

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 2      acaacaacaaatgcatctact 22
              |||||||||||||||||||||
Sbjct: 168186 acaacaacaaatgcatctact 168166
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>emb|BX822747.1|CNS0A4PQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB61ZB11 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 2006

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                             
Query: 488  actccctctcaaaaatcaagaactcctgtaactgctgctggctgaacaa 536
            ||||||||||||| | || |||||||||||| || ||| | ||||||||
Sbjct: 1760 actccctctcaaataacatgaactcctgtaattgttgccgactgaacaa 1712
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>gb|AF324892.1|AF324889S4 Homo sapiens myosin phosphatase target subunit 2 (MYPT2) gene, exons 11
              through 24, and complete cds
          Length = 150000

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 308    catgcttctttgcctctgttt 328
              |||||||||||||||||||||
Sbjct: 149633 catgcttctttgcctctgttt 149613
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>gb|AC015973.2|AC015973 Homo sapiens BAC clone RP11-366C6 from Y, complete sequence
          Length = 171834

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 308    catgcttctttgcctctgttt 328
              |||||||||||||||||||||
Sbjct: 132625 catgcttctttgcctctgttt 132605
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>emb|BX000484.12| Zebrafish DNA sequence from clone CH211-12E1 in linkage group 2,
             complete sequence
          Length = 158932

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 527   ggctgaacaagtgcatcatcccagaatct 555
             ||||||| |||||||||||||||| ||||
Sbjct: 69820 ggctgaataagtgcatcatcccagtatct 69848
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>gb|AC123917.25| Mus musculus chromosome 15, clone RP23-281P5, complete sequence
          Length = 184959

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 310   tgcttctttgcctctgtttgt 330
             |||||||||||||||||||||
Sbjct: 45874 tgcttctttgcctctgtttgt 45894
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>gb|AC130659.11| Mus musculus chromosome 1, clone RP23-326C19, complete sequence
          Length = 172121

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 213   gtttttgtctaatacatgaa 232
             ||||||||||||||||||||
Sbjct: 71163 gtttttgtctaatacatgaa 71144
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>gb|DQ165379.1| Dendroctonus rufipennis microsatellite 54 sequence
          Length = 170

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 312 cttctttgcctctgtttgtg 331
           ||||||||||||||||||||
Sbjct: 43  cttctttgcctctgtttgtg 24
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>gb|AC125235.3| Mus musculus BAC clone RP23-23D1 from chromosome 8, complete sequence
          Length = 191753

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 520   tgctgctggctgaacaagtg 539
             ||||||||||||||||||||
Sbjct: 27236 tgctgctggctgaacaagtg 27255
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>gb|AC162295.3| Mus musculus chromosome 1, clone RP24-232K22, complete sequence
          Length = 180957

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 213   gtttttgtctaatacatgaa 232
             ||||||||||||||||||||
Sbjct: 22892 gtttttgtctaatacatgaa 22911
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>gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence
          Length = 261265

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 45    tttcaaaagggaacaactat 64
             ||||||||||||||||||||
Sbjct: 30963 tttcaaaagggaacaactat 30982
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>gb|AC112250.4| Homo sapiens BAC clone RP11-710E1 from 4, complete sequence
          Length = 79475

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 468   ctccattttacatatgaagc 487
             ||||||||||||||||||||
Sbjct: 66247 ctccattttacatatgaagc 66228
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>gb|AY643071.1| Capnocytophaga canimorsus strain 24231 RNA polymerase beta subunit
           (rpoB) gene, partial cds
          Length = 2201

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 391 gagattcaggcttcaataaa 410
           ||||||||||||||||||||
Sbjct: 564 gagattcaggcttcaataaa 545
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>gb|AY643069.1| Capnocytophaga canimorsus strain CIP 103936 RNA polymerase beta
           subunit (rpoB) gene, partial cds
          Length = 2201

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 391 gagattcaggcttcaataaa 410
           ||||||||||||||||||||
Sbjct: 564 gagattcaggcttcaataaa 545
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 483     gaagcactccctctcaaaaa 502
               ||||||||||||||||||||
Sbjct: 5555116 gaagcactccctctcaaaaa 5555135
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 25      acatgttcagacttagcatg 44
               ||||||||||||||||||||
Sbjct: 7797703 acatgttcagacttagcatg 7797684
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>gb|AC010984.7| Homo sapiens BAC clone RP11-510C1 from 2, complete sequence
          Length = 191540

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 453   ctgctcttcctcaagctcca 472
             ||||||||||||||||||||
Sbjct: 77362 ctgctcttcctcaagctcca 77381
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>gb|BC025667.1| Homo sapiens, clone IMAGE:5200887, mRNA
          Length = 1617

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 453  ctgctcttcctcaagctcca 472
            ||||||||||||||||||||
Sbjct: 1253 ctgctcttcctcaagctcca 1272
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>gb|AC140481.3| Homo sapiens BAC clone RP11-1216L17 from 2, complete sequence
          Length = 219471

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 453   ctgctcttcctcaagctcca 472
             ||||||||||||||||||||
Sbjct: 22767 ctgctcttcctcaagctcca 22748
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>gb|AC092602.2| Homo sapiens BAC clone RP11-134G21 from 2, complete sequence
          Length = 166299

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 453   ctgctcttcctcaagctcca 472
             ||||||||||||||||||||
Sbjct: 31829 ctgctcttcctcaagctcca 31810
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>gb|AC025423.32| Homo sapiens 12 BAC RP11-611O2 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 150579

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 414   ataatttaaaccatgagtgg 433
             ||||||||||||||||||||
Sbjct: 47270 ataatttaaaccatgagtgg 47251
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>dbj|AP005912.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0064I23
          Length = 161865

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 25    acatgttcagacttagcatg 44
             ||||||||||||||||||||
Sbjct: 44906 acatgttcagacttagcatg 44887
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>emb|CR385027.12| Zebrafish DNA sequence from clone DKEY-13A17 in linkage group 9,
             complete sequence
          Length = 228454

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 251   ctgatatgcaaatccagcag 270
             ||||||||||||||||||||
Sbjct: 14466 ctgatatgcaaatccagcag 14485
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>emb|AL109985.5|CNS018P2 Human chromosome 14 DNA sequence BAC R-370E23 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 186548

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 351   tgtgaagaacgtgccagaga 370
             ||||||||||||||||||||
Sbjct: 35621 tgtgaagaacgtgccagaga 35602
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>emb|AL662994.3|OSJN00192 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0006L01,
             complete sequence
          Length = 162227

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 483   gaagcactccctctcaaaaa 502
             ||||||||||||||||||||
Sbjct: 12323 gaagcactccctctcaaaaa 12342
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>emb|AL662934.3|OSJN00136 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0027O01,
              complete sequence
          Length = 150283

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 483    gaagcactccctctcaaaaa 502
              ||||||||||||||||||||
Sbjct: 109746 gaagcactccctctcaaaaa 109765


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,448,924
Number of Sequences: 3902068
Number of extensions: 6448924
Number of successful extensions: 116515
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 116334
Number of HSP's gapped (non-prelim): 181
length of query: 561
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 538
effective length of database: 17,143,297,704
effective search space: 9223094164752
effective search space used: 9223094164752
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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