ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags3n01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_464667.1| Oryza sativa (japonica cultivar-group), mRNA 236 6e-59
2dbj|AK066996.1| Oryza sativa (japonica cultivar-group) cDNA clon... 236 6e-59
3dbj|AK060032.1| Oryza sativa (japonica cultivar-group) cDNA clon... 236 6e-59
4gb|BT016619.1| Zea mays clone Contig452 mRNA sequence 208 1e-50
5gb|AY104402.1| Zea mays PCO137047 mRNA sequence 208 1e-50
6dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 141 3e-30
7dbj|AP004996.3| Oryza sativa (japonica cultivar-group) genomic D... 141 3e-30
8gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome 44 0.50
9ref|XM_482249.1| Oryza sativa (japonica cultivar-group), mRNA 42 2.0
10gb|AC132262.2| Mus musculus chromosome 5 clone RP24-370J24, comp... 42 2.0
11ref|XM_450615.1| Oryza sativa (japonica cultivar-group), mRNA 42 2.0
12ref|XM_450614.1| Oryza sativa (japonica cultivar-group), mRNA 42 2.0
13gb|BT013806.1| Lycopersicon esculentum clone 132727F, mRNA sequence 42 2.0
14gb|AC104101.5| Mus musculus BAC clone RP24-377D2 from chromosome... 42 2.0
15gb|AC113506.12| Mus musculus chromosome 9, clone RP23-373O2, com... 42 2.0
16ref|XM_763899.1| Giardia lamblia ATCC 50803 hypothetical protein... 42 2.0
17ref|NM_008829.1| Mus musculus progesterone receptor (Pgr), mRNA 42 2.0
18dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete g... 42 2.0
19dbj|AK142629.1| Mus musculus 10 days lactation, adult female mam... 42 2.0
20gb|AC169370.4| Sorghum bicolor clone SB_BBc0011I20, complete seq... 42 2.0
21ref|NM_022847.1| Rattus norvegicus progesterone receptor (Pgr), ... 42 2.0
22dbj|AK054117.1| Mus musculus 2 days pregnant adult female oviduc... 42 2.0
23dbj|AK036862.1| Mus musculus adult female vagina cDNA, RIKEN ful... 42 2.0
24dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
25ref|XM_579464.1| PREDICTED: Rattus norvegicus progesterone recep... 42 2.0
26dbj|AP005572.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
27dbj|AK120068.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.0
28dbj|AK068512.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.0
29dbj|AK068165.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.0
30gb|M68915.1|MUSPR Mouse progesterone receptor (PR) mRNA, complet... 42 2.0
31gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome 42 2.0
32gb|L16922.1|RATPRGRECB Rat progesteron receptor gene, complete cds 42 2.0
33gb|AC116472.14| Mus musculus chromosome 7, clone RP23-384B23, co... 40 7.8
34gb|AC117621.7| Mus musculus chromosome 8, clone RP23-114B10, com... 40 7.8
35gb|AC114995.7| Mus musculus chromosome 8, clone RP23-171P5, comp... 40 7.8
36emb|BX901956.4| Zebrafish DNA sequence from clone CH211-284C12 i... 40 7.8
37gb|AY527062.1| Mytilus edulis 18S ribosomal RNA gene, partial se... 40 7.8
38gb|AC134763.4| Rattus norvegicus BAC CH230-221M14 (Children's H... 40 7.8
39dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.8
40dbj|AB201231.1| Musculista senhousia gene for 18S ribosomal RNA,... 40 7.8
41gb|AF124207.1|AF124207 Musculus senhousei 18S ribosomal RNA gene... 40 7.8
42gb|AF124206.1|AF124206 Musculus discors 18S ribosomal RNA gene, ... 40 7.8
43gb|L33448.1|MSLSRRNAA Mytilus edulis 18S small subunit ribosomal... 40 7.8
44gb|L33449.1|MSLSRRNAB Mytilus californianus 18S small subunit ri... 40 7.8
45gb|L33451.1|MSLSRRNAC Mytilus galloprovincialis isolate Morgat, ... 40 7.8
46gb|L33453.1|MSLSRRNAE Mytilus trossulus strain Pacific strain 1 ... 40 7.8
47gb|L33454.1|MSLSRRNAF Mytilus trossulus strain Pacific strain 2 ... 40 7.8
48gb|L33455.1|MSLSRRNAG Mytilus trossulus strain Pacific strain 3 ... 40 7.8
49dbj|AP005124.5| Oryza sativa (japonica cultivar-group) genomic D... 40 7.8
50emb|AL929222.6| Zebrafish DNA sequence from clone DKEY-31N5, com... 40 7.8
51emb|X78814.1|NPPSY N.pseudonarcissus mRNA for phytoene synthase 40 7.8
52dbj|AP001561.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 7.8
53gb|DQ310715.1| Mytella strigata 18S ribosomal RNA gene, partial ... 40 7.8
54emb|X90960.1|AN18SRRNA A.noae 18S ribosomal RNA gene 40 7.8
55emb|X91403.1|AGEL18S A.gelatinosum 18S ribosomal RNA gene 40 7.8
56gb|L24490.1|MSLMRNAB Mytilus trossulus 18S ribosomal RNA (18S rRNA) 40 7.8
57gb|L24489.1|MSLMRNAA Mytilus edulis 18S ribosomal RNA (18SrRNA) 40 7.8 
>ref|XM_464667.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3020

 Score =  236 bits (119), Expect = 6e-59
 Identities = 348/423 (82%), Gaps = 1/423 (0%)
 Strand = Plus / Minus

                                                                        
Query: 140  tccttgagaacatttccgaggtcggactcgcccttggtgctcttgacccacttggccttg 199
            |||||||| ||||| || ||||  | |||| || |||||||||  ||||| ||||| |||
Sbjct: 2723 tccttgaggacattgcccaggttagcctcggccctggtgctctccacccatttggcattg 2664

                                                                        
Query: 200  atcctcaccctctcgatgctctgcttcaccgtcctcgcgatgctcgccttggtcctgctc 259
            |||||||| ||||||||||||||||||||||||||||||||| | ||||| |||||||||
Sbjct: 2663 atcctcactctctcgatgctctgcttcaccgtcctcgcgatgttggccttcgtcctgctc 2604

                                                                        
Query: 260  ttgaagaactcctctgcctcgtcacccttctcgtctgtggcgagcggtgagacagtgacg 319
            |||||||||||||| || ||||| ||| | || || |||   ||||||||||| |||  |
Sbjct: 2603 ttgaagaactcctccgcgtcgtcgcccatttcatcggtgcgcagcggtgagacggtggtg 2544

                                                                        
Query: 320  gtgatgaaataggtgagcaggtgtccagtgaaggtctctgctatgtagtcccagttttcc 379
            |  | |||||||||||| ||   ||||| |||||| ||||  ||||||||||| ||||||
Sbjct: 2543 gaaacgaaataggtgagaagagttccagagaaggtgtctgaaatgtagtcccacttttcc 2484

                                                                        
Query: 380  ttcaaccatgtccatgccacctcatgcgctgctgcagtcactccacggagcacaaatatg 439
            ||||||||||||||||||||||||||  | ||||||   ||||| |  |||| |||||| 
Sbjct: 2483 ttcaaccatgtccatgccacctcatgtcccgctgcaccgactcctctaagcaaaaatata 2424

                                                                        
Query: 440  caatcctgattccttacctcagaagatagcaagaaattcagcgcttcacgcacaacatca 499
             | ||||||||||| |||||||  || |||| ||| | ||| |  ||||| |||||||||
Sbjct: 2423 gagtcctgattcctcacctcaggtgacagcatgaagtccagtgtatcacgaacaacatca 2364

                                                                        
Query: 500  gggtcagggggatgatgccagagaaccaagaacacggactttttcctggctcagatcagt 559
            || ||| ||| | ||||| |||||||| | ||  | ||||||||||||||||||||||||
Sbjct: 2363 ggatca-gggcaagatgctagagaacctaaaattctgactttttcctggctcagatcagt 2305

               
Query: 560  ttc 562
            |||
Sbjct: 2304 ttc 2302
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>dbj|AK066996.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089H24, full
            insert sequence
          Length = 3020

 Score =  236 bits (119), Expect = 6e-59
 Identities = 348/423 (82%), Gaps = 1/423 (0%)
 Strand = Plus / Minus

                                                                        
Query: 140  tccttgagaacatttccgaggtcggactcgcccttggtgctcttgacccacttggccttg 199
            |||||||| ||||| || ||||  | |||| || |||||||||  ||||| ||||| |||
Sbjct: 2723 tccttgaggacattgcccaggttagcctcggccctggtgctctccacccatttggcattg 2664

                                                                        
Query: 200  atcctcaccctctcgatgctctgcttcaccgtcctcgcgatgctcgccttggtcctgctc 259
            |||||||| ||||||||||||||||||||||||||||||||| | ||||| |||||||||
Sbjct: 2663 atcctcactctctcgatgctctgcttcaccgtcctcgcgatgttggccttcgtcctgctc 2604

                                                                        
Query: 260  ttgaagaactcctctgcctcgtcacccttctcgtctgtggcgagcggtgagacagtgacg 319
            |||||||||||||| || ||||| ||| | || || |||   ||||||||||| |||  |
Sbjct: 2603 ttgaagaactcctccgcgtcgtcgcccatttcatcggtgcgcagcggtgagacggtggtg 2544

                                                                        
Query: 320  gtgatgaaataggtgagcaggtgtccagtgaaggtctctgctatgtagtcccagttttcc 379
            |  | |||||||||||| ||   ||||| |||||| ||||  ||||||||||| ||||||
Sbjct: 2543 gaaacgaaataggtgagaagagttccagagaaggtgtctgaaatgtagtcccacttttcc 2484

                                                                        
Query: 380  ttcaaccatgtccatgccacctcatgcgctgctgcagtcactccacggagcacaaatatg 439
            ||||||||||||||||||||||||||  | ||||||   ||||| |  |||| |||||| 
Sbjct: 2483 ttcaaccatgtccatgccacctcatgtcccgctgcaccgactcctctaagcaaaaatata 2424

                                                                        
Query: 440  caatcctgattccttacctcagaagatagcaagaaattcagcgcttcacgcacaacatca 499
             | ||||||||||| |||||||  || |||| ||| | ||| |  ||||| |||||||||
Sbjct: 2423 gagtcctgattcctcacctcaggtgacagcatgaagtccagtgtatcacgaacaacatca 2364

                                                                        
Query: 500  gggtcagggggatgatgccagagaaccaagaacacggactttttcctggctcagatcagt 559
            || ||| ||| | ||||| |||||||| | ||  | ||||||||||||||||||||||||
Sbjct: 2363 ggatca-gggcaagatgctagagaacctaaaattctgactttttcctggctcagatcagt 2305

               
Query: 560  ttc 562
            |||
Sbjct: 2304 ttc 2302
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>dbj|AK060032.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-H06, full
           insert sequence
          Length = 977

 Score =  236 bits (119), Expect = 6e-59
 Identities = 348/423 (82%), Gaps = 1/423 (0%)
 Strand = Plus / Minus

                                                                       
Query: 140 tccttgagaacatttccgaggtcggactcgcccttggtgctcttgacccacttggccttg 199
           |||||||| ||||| || ||||  | |||| || |||||||||  ||||| ||||| |||
Sbjct: 680 tccttgaggacattgcccaggttagcctcggccctggtgctctccacccatttggcattg 621

                                                                       
Query: 200 atcctcaccctctcgatgctctgcttcaccgtcctcgcgatgctcgccttggtcctgctc 259
           |||||||| ||||||||||||||||||||||||||||||||| | ||||| |||||||||
Sbjct: 620 atcctcactctctcgatgctctgcttcaccgtcctcgcgatgttggccttcgtcctgctc 561

                                                                       
Query: 260 ttgaagaactcctctgcctcgtcacccttctcgtctgtggcgagcggtgagacagtgacg 319
           |||||||||||||| || ||||| ||| | || || |||   ||||||||||| |||  |
Sbjct: 560 ttgaagaactcctccgcgtcgtcgcccatttcatcggtgcgcagcggtgagacggtggtg 501

                                                                       
Query: 320 gtgatgaaataggtgagcaggtgtccagtgaaggtctctgctatgtagtcccagttttcc 379
           |  | |||||||||||| ||   ||||| |||||| ||||  ||||||||||| ||||||
Sbjct: 500 gaaacgaaataggtgagaagagttccagagaaggtgtctgaaatgtagtcccacttttcc 441

                                                                       
Query: 380 ttcaaccatgtccatgccacctcatgcgctgctgcagtcactccacggagcacaaatatg 439
           ||||||||||||||||||||||||||  | ||||||   ||||| |  |||| |||||| 
Sbjct: 440 ttcaaccatgtccatgccacctcatgtcccgctgcaccgactcctctaagcaaaaatata 381

                                                                       
Query: 440 caatcctgattccttacctcagaagatagcaagaaattcagcgcttcacgcacaacatca 499
            | ||||||||||| |||||||  || |||| ||| | ||| |  ||||| |||||||||
Sbjct: 380 gagtcctgattcctcacctcaggtgacagcatgaagtccagtgtatcacgaacaacatca 321

                                                                       
Query: 500 gggtcagggggatgatgccagagaaccaagaacacggactttttcctggctcagatcagt 559
           || ||| ||| | ||||| |||||||| | ||  | ||||||||||||||||||||||||
Sbjct: 320 ggatca-gggcaagatgctagagaacctaaaattctgactttttcctggctcagatcagt 262

              
Query: 560 ttc 562
           |||
Sbjct: 261 ttc 259
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>gb|BT016619.1| Zea mays clone Contig452 mRNA sequence
          Length = 1911

 Score =  208 bits (105), Expect = 1e-50
 Identities = 358/441 (81%), Gaps = 1/441 (0%)
 Strand = Plus / Minus

                                                                        
Query: 125  tgcttgtgagcgagctccttgagaacatttccgaggtcggactcgcccttggtgctcttg 184
            ||||||| ||| |||| |||||||||||| |||||||| | |||| ||||| || |||||
Sbjct: 1769 tgcttgtaagccagcttcttgagaacattgccgaggtcagcctcggccttgatgttcttg 1710

                                                                        
Query: 185  acccacttggccttgatcctcaccctctcgatgctctgcttcaccgtcctcgcgatgctc 244
            ||||| | ||| ||||||||||||||||||||||||||| |||| |||||||||||| ||
Sbjct: 1709 acccattgggcattgatcctcaccctctcgatgctctgcctcacagtcctcgcgatgttc 1650

                                                                        
Query: 245  gccttggtcctgctcttgaagaactcctctgcctcgtcacccttctcgtctgtggcgagc 304
            |||||||| ||||||||||| |||||||| ||||| ||||| |  || || ||||| || 
Sbjct: 1649 gccttggttctgctcttgaaaaactcctccgcctcatcaccatgttcatcggtggccagt 1590

                                                                        
Query: 305  ggtgagacagtgacggtgatgaaataggtgagcaggtgtccagtgaaggtctctgctatg 364
            || |||||||| | | ||| |||||||||||||||   ||||| | |||   |   ||||
Sbjct: 1589 ggcgagacagttatgttgacgaaataggtgagcagagttccagagtaggctcccaatatg 1530

                                                                        
Query: 365  tagtcccagttttccttcaaccatgtccatgccacctcatgcgctgctgcagtcactcca 424
            || |||||||||||||||| ||||  |||||| ||||| || ||  ||| | |||| || 
Sbjct: 1529 taatcccagttttccttcagccattgccatgctacctcgtgtgcccctgaactcacccct 1470

                                                                        
Query: 425  cggagcacaaatatgcaatcctgattccttacctcagaagatagcaagaaattcagcgct 484
            |  |||| ||||||    ||||||||||| |||||||  || |  | ||||||||   ||
Sbjct: 1469 cttagcaaaaatattgcgtcctgattcctcacctcaggtgacaatatgaaattcaatact 1410

                                                                        
Query: 485  tcacgcacaacatcagggtcagggggatgatgccagagaaccaagaacacggactttttc 544
            ||||| ||||||||| ||||| ||||||||||||| |||||| |  ||||| ||||| ||
Sbjct: 1409 tcacggacaacatcatggtca-ggggatgatgccaaagaacctaacacacgaactttctc 1351

                                 
Query: 545  ctggctcagatcagtttccct 565
            |||||| ||||| ||||||||
Sbjct: 1350 ctggcttagatcggtttccct 1330
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>gb|AY104402.1| Zea mays PCO137047 mRNA sequence
          Length = 2125

 Score =  208 bits (105), Expect = 1e-50
 Identities = 358/441 (81%), Gaps = 1/441 (0%)
 Strand = Plus / Minus

                                                                        
Query: 125  tgcttgtgagcgagctccttgagaacatttccgaggtcggactcgcccttggtgctcttg 184
            ||||||| ||| |||| |||||||||||| |||||||| | |||| ||||| || |||||
Sbjct: 1807 tgcttgtaagccagcttcttgagaacattgccgaggtcagcctcggccttgatgttcttg 1748

                                                                        
Query: 185  acccacttggccttgatcctcaccctctcgatgctctgcttcaccgtcctcgcgatgctc 244
            ||||| | ||| ||||||||||||||||||||||||||| |||| |||||||||||| ||
Sbjct: 1747 acccattgggcattgatcctcaccctctcgatgctctgcctcacagtcctcgcgatgttc 1688

                                                                        
Query: 245  gccttggtcctgctcttgaagaactcctctgcctcgtcacccttctcgtctgtggcgagc 304
            |||||||| ||||||||||| |||||||| ||||| ||||| |  || || ||||| || 
Sbjct: 1687 gccttggttctgctcttgaaaaactcctccgcctcatcaccatgttcatcggtggccagt 1628

                                                                        
Query: 305  ggtgagacagtgacggtgatgaaataggtgagcaggtgtccagtgaaggtctctgctatg 364
            || |||||||| | | ||| |||||||||||||||   ||||| | |||   |   ||||
Sbjct: 1627 ggcgagacagttatgttgacgaaataggtgagcagagttccagagtaggctcccaatatg 1568

                                                                        
Query: 365  tagtcccagttttccttcaaccatgtccatgccacctcatgcgctgctgcagtcactcca 424
            || |||||||||||||||| ||||  |||||| ||||| || ||  ||| | |||| || 
Sbjct: 1567 taatcccagttttccttcagccattgccatgctacctcgtgtgcccctgaactcacccct 1508

                                                                        
Query: 425  cggagcacaaatatgcaatcctgattccttacctcagaagatagcaagaaattcagcgct 484
            |  |||| ||||||    ||||||||||| |||||||  || |  | ||||||||   ||
Sbjct: 1507 cttagcaaaaatattgcgtcctgattcctcacctcaggtgacaatatgaaattcaatact 1448

                                                                        
Query: 485  tcacgcacaacatcagggtcagggggatgatgccagagaaccaagaacacggactttttc 544
            ||||| ||||||||| ||||| ||||||||||||| |||||| |  ||||| ||||| ||
Sbjct: 1447 tcacggacaacatcatggtca-ggggatgatgccaaagaacctaacacacgaactttctc 1389

                                 
Query: 545  ctggctcagatcagtttccct 565
            |||||| ||||| ||||||||
Sbjct: 1388 ctggcttagatcggtttccct 1368
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  141 bits (71), Expect = 3e-30
 Identities = 125/143 (87%)
 Strand = Plus / Minus

                                                                           
Query: 140     tccttgagaacatttccgaggtcggactcgcccttggtgctcttgacccacttggccttg 199
               |||||||| ||||| || ||||  | |||| || |||||||||  ||||| ||||| |||
Sbjct: 6605319 tccttgaggacattgcccaggttagcctcggccctggtgctctccacccatttggcattg 6605260

                                                                           
Query: 200     atcctcaccctctcgatgctctgcttcaccgtcctcgcgatgctcgccttggtcctgctc 259
               |||||||| ||||||||||||||||||||||||||||||||| | ||||| |||||||||
Sbjct: 6605259 atcctcactctctcgatgctctgcttcaccgtcctcgcgatgttggccttcgtcctgctc 6605200

                                      
Query: 260     ttgaagaactcctctgcctcgtc 282
               |||||||||||||| || |||||
Sbjct: 6605199 ttgaagaactcctccgcgtcgtc 6605177



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                           
Query: 378     ccttcaaccatgtccatgccacctcatg 405
               ||||||||||||||||||||||||||||
Sbjct: 6604903 ccttcaaccatgtccatgccacctcatg 6604876



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                          
Query: 536     gactttttcctggctcagatcagtttc 562
               |||||||||||||||||||||||||||
Sbjct: 6604543 gactttttcctggctcagatcagtttc 6604517



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                       
Query: 325     gaaataggtgagcaggtgtccagtgaaggtctctgctatgtagtcccagttttcct 380
               |||||||||||| ||   ||||| |||||| ||||  ||||||||||| |||||||
Sbjct: 6605039 gaaataggtgagaagagttccagagaaggtgtctgaaatgtagtcccacttttcct 6604984
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>dbj|AP004996.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0027A02
          Length = 140402

 Score =  141 bits (71), Expect = 3e-30
 Identities = 125/143 (87%)
 Strand = Plus / Minus

                                                                         
Query: 140   tccttgagaacatttccgaggtcggactcgcccttggtgctcttgacccacttggccttg 199
             |||||||| ||||| || ||||  | |||| || |||||||||  ||||| ||||| |||
Sbjct: 39694 tccttgaggacattgcccaggttagcctcggccctggtgctctccacccatttggcattg 39635

                                                                         
Query: 200   atcctcaccctctcgatgctctgcttcaccgtcctcgcgatgctcgccttggtcctgctc 259
             |||||||| ||||||||||||||||||||||||||||||||| | ||||| |||||||||
Sbjct: 39634 atcctcactctctcgatgctctgcttcaccgtcctcgcgatgttggccttcgtcctgctc 39575

                                    
Query: 260   ttgaagaactcctctgcctcgtc 282
             |||||||||||||| || |||||
Sbjct: 39574 ttgaagaactcctccgcgtcgtc 39552



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                         
Query: 378   ccttcaaccatgtccatgccacctcatg 405
             ||||||||||||||||||||||||||||
Sbjct: 39278 ccttcaaccatgtccatgccacctcatg 39251



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                        
Query: 536   gactttttcctggctcagatcagtttc 562
             |||||||||||||||||||||||||||
Sbjct: 38918 gactttttcctggctcagatcagtttc 38892



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                     
Query: 325   gaaataggtgagcaggtgtccagtgaaggtctctgctatgtagtcccagttttcct 380
             |||||||||||| ||   ||||| |||||| ||||  ||||||||||| |||||||
Sbjct: 39414 gaaataggtgagaagagttccagagaaggtgtctgaaatgtagtcccacttttcct 39359
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>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome
          Length = 4096345

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 246     ccttggtcctgctcttgaagaa 267
               ||||||||||||||||||||||
Sbjct: 1878602 ccttggtcctgctcttgaagaa 1878581
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>ref|XM_482249.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2685

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 368  tcccagttttccttcaaccatgtccatgc 396
            |||||||||||||||||||| | ||||||
Sbjct: 2432 tcccagttttccttcaaccaggcccatgc 2404
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>gb|AC132262.2| Mus musculus chromosome 5 clone RP24-370J24, complete sequence
          Length = 176466

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 451   ccttacctcagaagatagcaa 471
             |||||||||||||||||||||
Sbjct: 62103 ccttacctcagaagatagcaa 62123
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>ref|XM_450615.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2622

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 368  tcccagttttccttcaaccatgtccatgc 396
            |||||||||||||||||||| | ||||||
Sbjct: 2372 tcccagttttccttcaaccaggaccatgc 2344
to top
>ref|XM_450614.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2984

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 187  ccacttggccttgatcctcaccctctcgatgctctgcttca 227
            |||| |||| ||||||  ||||||||||| |||||||||||
Sbjct: 2548 ccacctggcgttgatcagcaccctctcgaggctctgcttca 2508



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 368  tcccagttttccttcaaccatgtccatgc 396
            |||||||||||||||||||| | ||||||
Sbjct: 2364 tcccagttttccttcaaccaggaccatgc 2336
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>gb|BT013806.1| Lycopersicon esculentum clone 132727F, mRNA sequence
          Length = 2861

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 206  accctctcgatgctctgcttcaccgtcct 234
            |||||||| ||||||||||||| ||||||
Sbjct: 2564 accctctcaatgctctgcttcaacgtcct 2536
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>gb|AC104101.5| Mus musculus BAC clone RP24-377D2 from chromosome 5, complete sequence
          Length = 185414

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 451    ccttacctcagaagatagcaa 471
              |||||||||||||||||||||
Sbjct: 126672 ccttacctcagaagatagcaa 126652
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>gb|AC113506.12| Mus musculus chromosome 9, clone RP23-373O2, complete sequence
          Length = 171170

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 446    tgattccttacctcagaagat 466
              |||||||||||||||||||||
Sbjct: 114804 tgattccttacctcagaagat 114824
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>ref|XM_763899.1| Giardia lamblia ATCC 50803 hypothetical protein
           (GLP_180_10079_9540) partial mRNA
          Length = 540

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 259 cttgaagaactcctctgcctc 279
           |||||||||||||||||||||
Sbjct: 132 cttgaagaactcctctgcctc 152
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>ref|NM_008829.1| Mus musculus progesterone receptor (Pgr), mRNA
          Length = 2794

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 446  tgattccttacctcagaagat 466
            |||||||||||||||||||||
Sbjct: 1654 tgattccttacctcagaagat 1674
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>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome
          Length = 2696255

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 48      gctcagtcaaaccagcaccac 68
               |||||||||||||||||||||
Sbjct: 1031023 gctcagtcaaaccagcaccac 1031043
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>dbj|AK142629.1| Mus musculus 10 days lactation, adult female mammary gland cDNA,
           RIKEN full-length enriched library, clone:D730019K09
           product:progesterone receptor, full insert sequence
          Length = 1504

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 446 tgattccttacctcagaagat 466
           |||||||||||||||||||||
Sbjct: 613 tgattccttacctcagaagat 633
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>gb|AC169370.4| Sorghum bicolor clone SB_BBc0011I20, complete sequence
          Length = 135209

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 499   agggtcagggggatgatgcca 519
             |||||||||||||||||||||
Sbjct: 86662 agggtcagggggatgatgcca 86682
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>ref|NM_022847.1| Rattus norvegicus progesterone receptor (Pgr), mRNA
          Length = 3056

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 446  tgattccttacctcagaagat 466
            |||||||||||||||||||||
Sbjct: 1647 tgattccttacctcagaagat 1667
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>dbj|AK054117.1| Mus musculus 2 days pregnant adult female oviduct cDNA, RIKEN
           full-length enriched library, clone:E230020K18
           product:progesterone receptor, full insert sequence
          Length = 2384

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 446 tgattccttacctcagaagat 466
           |||||||||||||||||||||
Sbjct: 972 tgattccttacctcagaagat 992
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>dbj|AK036862.1| Mus musculus adult female vagina cDNA, RIKEN full-length enriched
            library, clone:9930019P03 product:PROGESTERONE RECEPTOR
            (PR) homolog [Mus musculus], full insert sequence
          Length = 3900

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 446  tgattccttacctcagaagat 466
            |||||||||||||||||||||
Sbjct: 1706 tgattccttacctcagaagat 1726
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                         
Query: 187      ccacttggccttgatcctcaccctctcgatgctctgcttca 227
                |||| |||| ||||||  ||||||||||| |||||||||||
Sbjct: 11797072 ccacctggcgttgatcagcaccctctcgaggctctgcttca 11797032
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>ref|XM_579464.1| PREDICTED: Rattus norvegicus progesterone receptor (Pgr), mRNA
          Length = 3064

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 446  tgattccttacctcagaagat 466
            |||||||||||||||||||||
Sbjct: 1656 tgattccttacctcagaagat 1676
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>dbj|AP005572.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1506_A04
          Length = 114998

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                      
Query: 187   ccacttggccttgatcctcaccctctcgatgctctgcttca 227
             |||| |||| ||||||  ||||||||||| |||||||||||
Sbjct: 39890 ccacctggcgttgatcagcaccctctcgaggctctgcttca 39850
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>dbj|AK120068.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002N11, full
            insert sequence
          Length = 2975

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 368  tcccagttttccttcaaccatgtccatgc 396
            |||||||||||||||||||| | ||||||
Sbjct: 2474 tcccagttttccttcaaccaggcccatgc 2446
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>dbj|AK068512.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013152F03, full
            insert sequence
          Length = 2232

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 368  tcccagttttccttcaaccatgtccatgc 396
            |||||||||||||||||||| | ||||||
Sbjct: 1633 tcccagttttccttcaaccaggaccatgc 1605
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>dbj|AK068165.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013134N07, full
            insert sequence
          Length = 2985

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 187  ccacttggccttgatcctcaccctctcgatgctctgcttca 227
            |||| |||| ||||||  ||||||||||| |||||||||||
Sbjct: 2549 ccacctggcgttgatcagcaccctctcgaggctctgcttca 2509



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 368  tcccagttttccttcaaccatgtccatgc 396
            |||||||||||||||||||| | ||||||
Sbjct: 2365 tcccagttttccttcaaccaggaccatgc 2337
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>gb|M68915.1|MUSPR Mouse progesterone receptor (PR) mRNA, complete cds
          Length = 2794

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 446  tgattccttacctcagaagat 466
            |||||||||||||||||||||
Sbjct: 1654 tgattccttacctcagaagat 1674
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>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome
          Length = 2695903

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 48     gctcagtcaaaccagcaccac 68
              |||||||||||||||||||||
Sbjct: 589854 gctcagtcaaaccagcaccac 589834
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>gb|L16922.1|RATPRGRECB Rat progesteron receptor gene, complete cds
          Length = 3056

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 446  tgattccttacctcagaagat 466
            |||||||||||||||||||||
Sbjct: 1647 tgattccttacctcagaagat 1667
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>gb|AC116472.14| Mus musculus chromosome 7, clone RP23-384B23, complete sequence
          Length = 216191

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 375    tttccttcaaccatgtccat 394
              ||||||||||||||||||||
Sbjct: 172386 tttccttcaaccatgtccat 172405
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>gb|AC117621.7| Mus musculus chromosome 8, clone RP23-114B10, complete sequence
          Length = 214933

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 326    aaataggtgagcaggtgtcc 345
              ||||||||||||||||||||
Sbjct: 158186 aaataggtgagcaggtgtcc 158167
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>gb|AC114995.7| Mus musculus chromosome 8, clone RP23-171P5, complete sequence
          Length = 242745

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 326  aaataggtgagcaggtgtcc 345
            ||||||||||||||||||||
Sbjct: 5015 aaataggtgagcaggtgtcc 4996
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>emb|BX901956.4| Zebrafish DNA sequence from clone CH211-284C12 in linkage group 3,
             complete sequence
          Length = 197042

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 186   cccacttggccttgatcctc 205
             ||||||||||||||||||||
Sbjct: 10539 cccacttggccttgatcctc 10520
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>gb|AY527062.1| Mytilus edulis 18S ribosomal RNA gene, partial sequence
          Length = 1823

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 167 tcgcccttggtgctcttgac 186
           ||||||||||||||||||||
Sbjct: 716 tcgcccttggtgctcttgac 735
to top
>gb|AC134763.4| Rattus norvegicus  BAC CH230-221M14 (Children's Hospital Oakland Research
              Institute Rat (BN/SsNHsd/MCW) BAC library) complete
              sequence
          Length = 222524

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 62     gcaccacagggaagagggctgaat 85
              ||||||||||| ||||||||||||
Sbjct: 120255 gcaccacagggcagagggctgaat 120232
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 393     atgccacctcatgcgctgct 412
               ||||||||||||||||||||
Sbjct: 5028169 atgccacctcatgcgctgct 5028150
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>dbj|AB201231.1| Musculista senhousia gene for 18S ribosomal RNA, partial sequence
          Length = 1740

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 167 tcgcccttggtgctcttgac 186
           ||||||||||||||||||||
Sbjct: 670 tcgcccttggtgctcttgac 689
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>gb|AF124207.1|AF124207 Musculus senhousei 18S ribosomal RNA gene, partial sequence
          Length = 1778

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 167 tcgcccttggtgctcttgac 186
           ||||||||||||||||||||
Sbjct: 687 tcgcccttggtgctcttgac 706
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>gb|AF124206.1|AF124206 Musculus discors 18S ribosomal RNA gene, partial sequence
          Length = 1782

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 167 tcgcccttggtgctcttgac 186
           ||||||||||||||||||||
Sbjct: 696 tcgcccttggtgctcttgac 715
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>gb|L33448.1|MSLSRRNAA Mytilus edulis 18S small subunit ribosomal RNA gene, complete
           sequence
          Length = 1827

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 167 tcgcccttggtgctcttgac 186
           ||||||||||||||||||||
Sbjct: 717 tcgcccttggtgctcttgac 736
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>gb|L33449.1|MSLSRRNAB Mytilus californianus 18S small subunit ribosomal RNA gene,
           complete sequence
          Length = 1825

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 167 tcgcccttggtgctcttgac 186
           ||||||||||||||||||||
Sbjct: 715 tcgcccttggtgctcttgac 734
to top
>gb|L33451.1|MSLSRRNAC Mytilus galloprovincialis isolate Morgat, Bay of Douarnenez, West
           Brittany, France 18S small subunit ribosomal RNA gene,
           complete sequence
          Length = 1826

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 167 tcgcccttggtgctcttgac 186
           ||||||||||||||||||||
Sbjct: 716 tcgcccttggtgctcttgac 735
to top
>gb|L33453.1|MSLSRRNAE Mytilus trossulus strain Pacific strain 1 18S small subunit
           ribosomal RNA gene, complete sequence
          Length = 1827

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 167 tcgcccttggtgctcttgac 186
           ||||||||||||||||||||
Sbjct: 717 tcgcccttggtgctcttgac 736
to top
>gb|L33454.1|MSLSRRNAF Mytilus trossulus strain Pacific strain 2 18S small subunit
           ribosomal RNA gene, complete sequence
          Length = 1827

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 167 tcgcccttggtgctcttgac 186
           ||||||||||||||||||||
Sbjct: 717 tcgcccttggtgctcttgac 736
to top
>gb|L33455.1|MSLSRRNAG Mytilus trossulus strain Pacific strain 3 18S small subunit
           ribosomal RNA gene, complete sequence
          Length = 1826

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 167 tcgcccttggtgctcttgac 186
           ||||||||||||||||||||
Sbjct: 716 tcgcccttggtgctcttgac 735
to top
>dbj|AP005124.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0049I08
          Length = 144379

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 393   atgccacctcatgcgctgct 412
             ||||||||||||||||||||
Sbjct: 69858 atgccacctcatgcgctgct 69839
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>emb|AL929222.6| Zebrafish DNA sequence from clone DKEY-31N5, complete sequence
          Length = 212599

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 186    cccacttggccttgatcctc 205
              ||||||||||||||||||||
Sbjct: 203503 cccacttggccttgatcctc 203484
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>emb|X78814.1|NPPSY N.pseudonarcissus mRNA for phytoene synthase
          Length = 1548

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 376 ttccttcaaccatgtccatg 395
           ||||||||||||||||||||
Sbjct: 781 ttccttcaaccatgtccatg 762
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>dbj|AP001561.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-732G1, complete
              sequences
          Length = 195800

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 58     accagcaccacagggaagag 77
              ||||||||||||||||||||
Sbjct: 165694 accagcaccacagggaagag 165675
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>gb|DQ310715.1| Mytella strigata 18S ribosomal RNA gene, partial sequence
          Length = 415

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 167 tcgcccttggtgctcttgac 186
           ||||||||||||||||||||
Sbjct: 125 tcgcccttggtgctcttgac 144
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>emb|X90960.1|AN18SRRNA A.noae 18S ribosomal RNA gene
          Length = 1782

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 167 tcgcccttggtgctcttgac 186
           ||||||||||||||||||||
Sbjct: 712 tcgcccttggtgctcttgac 731
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>emb|X91403.1|AGEL18S A.gelatinosum 18S ribosomal RNA gene
          Length = 1813

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 167 tcgcccttggtgctcttgac 186
           ||||||||||||||||||||
Sbjct: 714 tcgcccttggtgctcttgac 733
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>gb|L24490.1|MSLMRNAB Mytilus trossulus 18S ribosomal RNA (18S rRNA)
          Length = 1826

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 167 tcgcccttggtgctcttgac 186
           ||||||||||||||||||||
Sbjct: 716 tcgcccttggtgctcttgac 735
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>gb|L24489.1|MSLMRNAA Mytilus edulis 18S ribosomal RNA (18SrRNA)
          Length = 1826

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 167 tcgcccttggtgctcttgac 186
           ||||||||||||||||||||
Sbjct: 717 tcgcccttggtgctcttgac 736


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,823,898
Number of Sequences: 3902068
Number of extensions: 4823898
Number of successful extensions: 76782
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76570
Number of HSP's gapped (non-prelim): 200
length of query: 572
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 549
effective length of database: 17,143,297,704
effective search space: 9411670439496
effective search space used: 9411670439496
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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