ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags3m19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC151480.1| Oryza sativa (japonica cultivar-group) chromosome... 36 8.8
2gb|AC123526.2| Oryza sativa japonica cultivar-group chromosome 1... 36 8.8
3ref|XM_381124.1| Gibberella zeae PH-1 chromosome 1 hypothetical ... 36 8.8
4gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 36 8.8
5dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 36 8.8
6dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 36 8.8
7dbj|AB016886.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 36 8.8
8gb|CP000020.1| Vibrio fischeri ES114 chromosome I, complete sequ... 36 8.8
9gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 36 8.8
10gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 36 8.8
11emb|AL935154.2|CNS08CCP Oryza sativa chromosome 12, . BAC OSJNBb... 36 8.8
12emb|AL928752.2|CNS08CBP Oryza sativa chromosome 12, . BAC OSJNBb... 36 8.8

>gb|AC151480.1| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNAa0068G15, complete sequence
          Length = 130161

 Score = 36.2 bits (18), Expect = 8.8
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 7     ccactacatcaaatggcg 24
             ||||||||||||||||||
Sbjct: 83064 ccactacatcaaatggcg 83047



to top

>gb|AC123526.2| Oryza sativa japonica cultivar-group chromosome 11 clone OSJNBa0059J06,
             complete sequence
          Length = 185449

 Score = 36.2 bits (18), Expect = 8.8
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 7     ccactacatcaaatggcg 24
             ||||||||||||||||||
Sbjct: 12903 ccactacatcaaatggcg 12886



to top

>ref|XM_381124.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG00948.1)
           partial mRNA
          Length = 1707

 Score = 36.2 bits (18), Expect = 8.8
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 15  tcaaatggcgatgccatg 32
           ||||||||||||||||||
Sbjct: 560 tcaaatggcgatgccatg 543



to top

>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 36.2 bits (18), Expect = 8.8
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                     
Query: 22      gcgatgccatggagcgggctac 43
               |||| |||||||||||||||||
Sbjct: 2336291 gcgaagccatggagcgggctac 2336312



to top

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 36.2 bits (18), Expect = 8.8
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 7       ccactacatcaaatggcg 24
               ||||||||||||||||||
Sbjct: 1876051 ccactacatcaaatggcg 1876034



to top

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 36.2 bits (18), Expect = 8.8
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 7       ccactacatcaaatggcg 24
               ||||||||||||||||||
Sbjct: 1941348 ccactacatcaaatggcg 1941331



to top

>dbj|AB016886.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MCA23
          Length = 82503

 Score = 36.2 bits (18), Expect = 8.8
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 6     tccactacatcaaatggc 23
             ||||||||||||||||||
Sbjct: 81505 tccactacatcaaatggc 81488



to top

>gb|CP000020.1| Vibrio fischeri ES114 chromosome I, complete sequence
          Length = 2906179

 Score = 36.2 bits (18), Expect = 8.8
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                 
Query: 13      catcaaatggcgatgcca 30
               ||||||||||||||||||
Sbjct: 1997689 catcaaatggcgatgcca 1997706



to top

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 36.2 bits (18), Expect = 8.8
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 7       ccactacatcaaatggcg 24
               ||||||||||||||||||
Sbjct: 1949129 ccactacatcaaatggcg 1949112



to top

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 36.2 bits (18), Expect = 8.8
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 7       ccactacatcaaatggcg 24
               ||||||||||||||||||
Sbjct: 1876002 ccactacatcaaatggcg 1875985



to top

>emb|AL935154.2|CNS08CCP Oryza sativa chromosome 12, . BAC OSJNBb0109O08 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 128619

 Score = 36.2 bits (18), Expect = 8.8
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 7     ccactacatcaaatggcg 24
             ||||||||||||||||||
Sbjct: 70741 ccactacatcaaatggcg 70724



to top

>emb|AL928752.2|CNS08CBP Oryza sativa chromosome 12, . BAC OSJNBb0034E23 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 107247

 Score = 36.2 bits (18), Expect = 8.8
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 7     ccactacatcaaatggcg 24
             ||||||||||||||||||
Sbjct: 92170 ccactacatcaaatggcg 92187


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 250,081
Number of Sequences: 3902068
Number of extensions: 250081
Number of successful extensions: 13759
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13689
Number of HSP's gapped (non-prelim): 70
length of query: 61
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 40
effective length of database: 17,151,101,840
effective search space: 686044073600
effective search space used: 686044073600
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
to top