ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags3m14 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome Length = 134545 Score = 926 bits (467), Expect = 0.0 Identities = 517/529 (97%), Gaps = 4/529 (0%) Strand = Plus / Plus Query: 1 ttttggnttttaaaac-tatacgtnaaacacaatnctactaatattaattctttgatnct 59 |||||| ||||||||| ||||||| ||||||||| ||||||| |||||||||||||| || Sbjct: 76958 ttttggattttaaaacatatacgtaaaacacaat-ctactaa-attaattctttgat-ct 77014 Query: 60 aaatttcgcctactagtatttataatacttcaggagctaatgaaactattttggtaaaat 119 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77015 caatttcgcctactagtatttataatacttcaggagctaatgaaactattttggtaaaat 77074 Query: 120 tcaattctctcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctt 179 ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 77075 tcaatcctctcaattcctcggcaatcgcgccaaaaactcgagttccttttggattgcctt 77134 Query: 180 tttgatcaattataaccgcagcattgtcatcatagcggattattataccgtcttcgcatt 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77135 tttgatcaattataaccgcagcattgtcatcatagcggattattataccgtcttcgcatt 77194 Query: 240 tgaattctttacatgtacgtacaattacagctcgaattacttcggatctttctagaggca 299 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77195 tgaactctttacatgtacgtacaattacagctcgaattacttcggatctttctagaggca 77254 Query: 300 tttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgct 359 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77255 tttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgct 77314 Query: 360 gattaccagcagctcctatgactcgaatacacatcaattttcgagctccactattgtctg 419 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | Sbjct: 77315 gattaccagcagctcctatgactcgaatacacatcaattttcgagctccactattatcgg 77374 Query: 420 ctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaa 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77375 ctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaa 77434 Query: 480 tgcaaaaggatgaaagaaatattgtctttccagaaagaaaaaccgggca 528 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77435 tgcaaaaggatgaaagaaatattgtctttccagaaagaaaaaccgggca 77483 Score = 200 bits (101), Expect = 4e-48 Identities = 113/116 (97%), Gaps = 1/116 (0%) Strand = Plus / Plus Query: 537 cttccataccccttttagggttctatatctctaatcgaataaattgacttcgtatggggc 596 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 77496 cttccataccccttttagggttctatatctctaatcgaataaattgacttcgtat-gggc 77554 Query: 597 attttactggccgctatggagatagctgctctagctacagnttcagatactccccc 652 ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 77555 attttactggcagctatggagatagctgctctagctacagtttcagatactccccc 77610
>gb|AE009947.2| Saccharum hybrid cultivar SP-80-3280 chloroplast, complete genome Length = 141182 Score = 835 bits (421), Expect = 0.0 Identities = 583/634 (91%), Gaps = 6/634 (0%) Strand = Plus / Plus Query: 17 tatacgtnaaacacaatnctactaatattaattctttgatnctaaatttcgcctactagt 76 ||||||| | ||||||| |||||||| || ||||||||| ||| || ||| |||||||| Sbjct: 81 tatacgtgagacacaat-ctactaatttt--ttctttgat-ctatatctcgtctactagt 136 Query: 77 atttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcc 136 ||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||| Sbjct: 137 atttataatacttcaggagctaatgaaactattttagtataattcaattctcttaattct 196 Query: 137 tcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataacc 196 ||||||| ||||||||||||||||||||||||||| || |||||||||||||| ||||| Sbjct: 197 tcggcaaccgcgccaaaaactcgagttccttttggatttcctttttgatcaatgataact 256 Query: 197 gcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgta 256 || ||||||||||||||||| |||||||||||||| |||| |||||||||||||| |||| Sbjct: 257 gctgcattgtcatcatagcgtattattataccgtcgtcgcctttgaattctttacgtgta 316 Query: 257 cgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtct 316 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 317 cgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtct 376 Query: 317 ttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcct 376 ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 377 ttgattacagcaataataacatcaccaatacgagcatatcgctgattaccagcggctcct 436 Query: 377 atgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtc 436 ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct: 437 atgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtc 496 Query: 437 tgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaaga 496 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 497 tgaggttgaatcatattattttgatttccatttgttatttcaatgcaaaaggatgaaaga 556 Query: 497 aatattgtctttccagaaagaaaaaccgggcannnnnnnncttccatacccct-tttagg 555 ||||||||||||||||||||||||||| || |||| |||| ||| ||| || Sbjct: 557 aatattgtctttccagaaagaaaaaccaggggttttttatcttcaatactcctttttggg 616 Query: 556 gttctatatctctaatcgaataaattgacttcgtatggggcattttactggccgctatgg 615 |||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||| | Sbjct: 617 gttctatatctctaatcgaagaaattgacttcgtat-gggcattttactggcagctatag 675 Query: 616 agatagctgctctagctacagnttcagatactcc 649 ||||||||||||||||||||| ||| |||||||| Sbjct: 676 agatagctgctctagctacagtttcggatactcc 709
>dbj|AP006714.1| Saccharum officinarum chloroplast DNA, complete genome Length = 141182 Score = 835 bits (421), Expect = 0.0 Identities = 583/634 (91%), Gaps = 6/634 (0%) Strand = Plus / Plus Query: 17 tatacgtnaaacacaatnctactaatattaattctttgatnctaaatttcgcctactagt 76 ||||||| | ||||||| |||||||| || ||||||||| ||| || ||| |||||||| Sbjct: 79638 tatacgtgagacacaat-ctactaatttt--ttctttgat-ctatatctcgtctactagt 79693 Query: 77 atttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcc 136 ||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||| Sbjct: 79694 atttataatacttcaggagctaatgaaactattttagtataattcaattctcttaattct 79753 Query: 137 tcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataacc 196 ||||||| ||||||||||||||||||||||||||| || |||||||||||||| ||||| Sbjct: 79754 tcggcaaccgcgccaaaaactcgagttccttttggatttcctttttgatcaatgataact 79813 Query: 197 gcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgta 256 || ||||||||||||||||| |||||||||||||| |||| |||||||||||||| |||| Sbjct: 79814 gctgcattgtcatcatagcgtattattataccgtcgtcgcctttgaattctttacgtgta 79873 Query: 257 cgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtct 316 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 79874 cgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtct 79933 Query: 317 ttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcct 376 ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 79934 ttgattacagcaataataacatcaccaatacgagcatatcgctgattaccagcggctcct 79993 Query: 377 atgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtc 436 ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct: 79994 atgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtc 80053 Query: 437 tgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaaga 496 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 80054 tgaggttgaatcatattattttgatttccatttgttatttcaatgcaaaaggatgaaaga 80113 Query: 497 aatattgtctttccagaaagaaaaaccgggcannnnnnnncttccatacccct-tttagg 555 ||||||||||||||||||||||||||| || |||| |||| ||| ||| || Sbjct: 80114 aatattgtctttccagaaagaaaaaccaggggttttttatcttcaatactcctttttggg 80173 Query: 556 gttctatatctctaatcgaataaattgacttcgtatggggcattttactggccgctatgg 615 |||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||| | Sbjct: 80174 gttctatatctctaatcgaagaaattgacttcgtat-gggcattttactggcagctatag 80232 Query: 616 agatagctgctctagctacagnttcagatactcc 649 ||||||||||||||||||||| ||| |||||||| Sbjct: 80233 agatagctgctctagctacagtttcggatactcc 80266
>ref|XM_481018.1| Oryza sativa (japonica cultivar-group), mRNA Length = 793 Score = 783 bits (395), Expect = 0.0 Identities = 440/455 (96%) Strand = Plus / Minus Query: 69 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctc 128 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 732 ctactagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctc 673 Query: 129 tcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaa 188 ||||||||||||| |||||||||||||| |||||||||||||| || ||||||||||||| Sbjct: 672 tcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaa 613 Query: 189 ttataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctt 248 | |||||||| |||||||| |||||||| |||||||||||||||||||||||||| |||| Sbjct: 612 tgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctt 553 Query: 249 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 552 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 493 Query: 309 atgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccag 368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 492 ctgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactag 433 Query: 369 cagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattta 428 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct: 432 cagctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattta 373 Query: 429 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 488 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 372 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 313 Query: 489 atgaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||||| |||| Sbjct: 312 atgaaagaaatattgtctttccagaaagaagaacc 278 Score = 93.7 bits (47), Expect = 7e-16 Identities = 80/90 (88%), Gaps = 1/90 (1%) Strand = Plus / Minus Query: 560 tatatctctaatcgaataaattgacttcgtatggggcattttactggccgctatggagat 619 ||||| ||||| |||| |||||||||||||||||| |||||| ||||| |||||||| || Sbjct: 239 tatatttctaaccgaagaaattgacttcgtatggg-cattttgctggcagctatggaaat 181 Query: 620 agctgctctagctacagnttcagatactcc 649 |||| |||||||||||| ||| |||||||| Sbjct: 180 agctactctagctacagtttcggatactcc 151
>ref|XM_481019.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2157 Score = 783 bits (395), Expect = 0.0 Identities = 440/455 (96%) Strand = Plus / Minus Query: 69 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctc 128 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 1474 ctactagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctc 1415 Query: 129 tcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaa 188 ||||||||||||| |||||||||||||| |||||||||||||| || ||||||||||||| Sbjct: 1414 tcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaa 1355 Query: 189 ttataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctt 248 | |||||||| |||||||| |||||||| |||||||||||||||||||||||||| |||| Sbjct: 1354 tgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctt 1295 Query: 249 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1294 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 1235 Query: 309 atgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccag 368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 1234 ctgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactag 1175 Query: 369 cagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattta 428 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct: 1174 cagctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattta 1115 Query: 429 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 488 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1114 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 1055 Query: 489 atgaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||||| |||| Sbjct: 1054 atgaaagaaatattgtctttccagaaagaagaacc 1020 Score = 93.7 bits (47), Expect = 7e-16 Identities = 80/90 (88%), Gaps = 1/90 (1%) Strand = Plus / Minus Query: 560 tatatctctaatcgaataaattgacttcgtatggggcattttactggccgctatggagat 619 ||||| ||||| |||| |||||||||||||||||| |||||| ||||| |||||||| || Sbjct: 981 tatatttctaaccgaagaaattgacttcgtatggg-cattttgctggcagctatggaaat 923 Query: 620 agctgctctagctacagnttcagatactcc 649 |||| |||||||||||| ||| |||||||| Sbjct: 922 agctactctagctacagtttcggatactcc 893
>ref|XM_507181.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0036E18.24 mRNA Length = 2157 Score = 783 bits (395), Expect = 0.0 Identities = 440/455 (96%) Strand = Plus / Minus Query: 69 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctc 128 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 1474 ctactagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctc 1415 Query: 129 tcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaa 188 ||||||||||||| |||||||||||||| |||||||||||||| || ||||||||||||| Sbjct: 1414 tcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaa 1355 Query: 189 ttataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctt 248 | |||||||| |||||||| |||||||| |||||||||||||||||||||||||| |||| Sbjct: 1354 tgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctt 1295 Query: 249 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1294 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 1235 Query: 309 atgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccag 368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 1234 ctgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactag 1175 Query: 369 cagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattta 428 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct: 1174 cagctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattta 1115 Query: 429 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 488 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1114 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 1055 Query: 489 atgaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||||| |||| Sbjct: 1054 atgaaagaaatattgtctttccagaaagaagaacc 1020 Score = 93.7 bits (47), Expect = 7e-16 Identities = 80/90 (88%), Gaps = 1/90 (1%) Strand = Plus / Minus Query: 560 tatatctctaatcgaataaattgacttcgtatggggcattttactggccgctatggagat 619 ||||| ||||| |||| |||||||||||||||||| |||||| ||||| |||||||| || Sbjct: 981 tatatttctaaccgaagaaattgacttcgtatggg-cattttgctggcagctatggaaat 923 Query: 620 agctgctctagctacagnttcagatactcc 649 |||| |||||||||||| ||| |||||||| Sbjct: 922 agctactctagctacagtttcggatactcc 893
>gb|AY522330.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare chloroplast, complete genome Length = 134551 Score = 783 bits (395), Expect = 0.0 Identities = 440/455 (96%) Strand = Plus / Plus Query: 69 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctc 128 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 77251 ctactagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctc 77310 Query: 129 tcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaa 188 ||||||||||||| |||||||||||||| |||||||||||||| || ||||||||||||| Sbjct: 77311 tcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaa 77370 Query: 189 ttataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctt 248 | |||||||| |||||||| |||||||| |||||||||||||||||||||||||| |||| Sbjct: 77371 tgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctt 77430 Query: 249 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77431 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 77490 Query: 309 atgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccag 368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 77491 ctgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactag 77550 Query: 369 cagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattta 428 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct: 77551 cagctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattta 77610 Query: 429 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 488 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77611 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 77670 Query: 489 atgaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||||| |||| Sbjct: 77671 atgaaagaaatattgtctttccagaaagaagaacc 77705 Score = 101 bits (51), Expect = 3e-18 Identities = 81/90 (90%), Gaps = 1/90 (1%) Strand = Plus / Plus Query: 560 tatatctctaatcgaataaattgacttcgtatggggcattttactggccgctatggagat 619 ||||| ||||| |||| |||||||||||||||||| |||||| ||||| |||||||| || Sbjct: 77743 tatatttctaaccgaagaaattgacttcgtatggg-cattttgctggcagctatggaaat 77801 Query: 620 agctgctctagctacagnttcagatactcc 649 ||||||||||||||||| ||| |||||||| Sbjct: 77802 agctgctctagctacagtttcggatactcc 77831
>gb|AY522331.1| Oryza sativa (japonica cultivar-group) isolate PA64S chloroplast, complete genome Length = 134551 Score = 783 bits (395), Expect = 0.0 Identities = 440/455 (96%) Strand = Plus / Plus Query: 69 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctc 128 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 77251 ctactagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctc 77310 Query: 129 tcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaa 188 ||||||||||||| |||||||||||||| |||||||||||||| || ||||||||||||| Sbjct: 77311 tcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaa 77370 Query: 189 ttataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctt 248 | |||||||| |||||||| |||||||| |||||||||||||||||||||||||| |||| Sbjct: 77371 tgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctt 77430 Query: 249 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77431 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 77490 Query: 309 atgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccag 368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 77491 ctgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactag 77550 Query: 369 cagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattta 428 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct: 77551 cagctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattta 77610 Query: 429 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 488 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77611 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 77670 Query: 489 atgaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||||| |||| Sbjct: 77671 atgaaagaaatattgtctttccagaaagaagaacc 77705 Score = 101 bits (51), Expect = 3e-18 Identities = 81/90 (90%), Gaps = 1/90 (1%) Strand = Plus / Plus Query: 560 tatatctctaatcgaataaattgacttcgtatggggcattttactggccgctatggagat 619 ||||| ||||| |||| |||||||||||||||||| |||||| ||||| |||||||| || Sbjct: 77743 tatatttctaaccgaagaaattgacttcgtatggg-cattttgctggcagctatggaaat 77801 Query: 620 agctgctctagctacagnttcagatactcc 649 ||||||||||||||||| ||| |||||||| Sbjct: 77802 agctgctctagctacagtttcggatactcc 77831
>gb|AY522329.1| Oryza sativa (indica cultivar-group) isolate 93-11 chloroplast, complete genome Length = 134496 Score = 783 bits (395), Expect = 0.0 Identities = 440/455 (96%) Strand = Plus / Plus Query: 69 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctc 128 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 77192 ctactagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctc 77251 Query: 129 tcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaa 188 ||||||||||||| |||||||||||||| |||||||||||||| || ||||||||||||| Sbjct: 77252 tcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaa 77311 Query: 189 ttataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctt 248 | |||||||| |||||||| |||||||| |||||||||||||||||||||||||| |||| Sbjct: 77312 tgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctt 77371 Query: 249 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77372 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 77431 Query: 309 atgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccag 368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 77432 ctgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactag 77491 Query: 369 cagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattta 428 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct: 77492 cagctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattta 77551 Query: 429 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 488 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77552 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 77611 Query: 489 atgaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||||| |||| Sbjct: 77612 atgaaagaaatattgtctttccagaaagaagaacc 77646 Score = 93.7 bits (47), Expect = 7e-16 Identities = 80/90 (88%), Gaps = 1/90 (1%) Strand = Plus / Plus Query: 560 tatatctctaatcgaataaattgacttcgtatggggcattttactggccgctatggagat 619 ||||| ||||| |||| |||||||||||||||||| |||||| ||||| |||||||| || Sbjct: 77687 tatatttctaaccgaagaaattgacttcgtatggg-cattttgctggcagctatggaaat 77745 Query: 620 agctgctctagctacagnttcagatactcc 649 |||| |||||||||||| ||| |||||||| Sbjct: 77746 agctactctagctacagtttcggatactcc 77775
>gb|AC136521.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone OSJNBa0034M22, complete sequence Length = 149435 Score = 783 bits (395), Expect = 0.0 Identities = 440/455 (96%) Strand = Plus / Plus Query: 69 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctc 128 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 53262 ctactagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctc 53321 Query: 129 tcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaa 188 ||||||||||||| |||||||||||||| |||||||||||||| || ||||||||||||| Sbjct: 53322 tcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaa 53381 Query: 189 ttataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctt 248 | |||||||| |||||||| |||||||| |||||||||||||||||||||||||| |||| Sbjct: 53382 tgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctt 53441 Query: 249 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 53442 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 53501 Query: 309 atgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccag 368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 53502 ctgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactag 53561 Query: 369 cagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattta 428 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct: 53562 cagctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattta 53621 Query: 429 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 488 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 53622 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 53681 Query: 489 atgaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||||| |||| Sbjct: 53682 atgaaagaaatattgtctttccagaaagaagaacc 53716 Score = 101 bits (51), Expect = 3e-18 Identities = 81/90 (90%), Gaps = 1/90 (1%) Strand = Plus / Plus Query: 560 tatatctctaatcgaataaattgacttcgtatggggcattttactggccgctatggagat 619 ||||| ||||| |||| |||||||||||||||||| |||||| ||||| |||||||| || Sbjct: 53754 tatatttctaaccgaagaaattgacttcgtatggg-cattttgctggcagctatggaaat 53812 Query: 620 agctgctctagctacagnttcagatactcc 649 ||||||||||||||||| ||| |||||||| Sbjct: 53813 agctgctctagctacagtttcggatactcc 53842
>gb|AC134345.2| Oryza sativa (jpaonica cultivar-group) chromosome 5 PAC clone P0012A07, complete sequence Length = 136858 Score = 783 bits (395), Expect = 0.0 Identities = 440/455 (96%) Strand = Plus / Plus Query: 69 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctc 128 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 126090 ctactagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctc 126149 Query: 129 tcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaa 188 ||||||||||||| |||||||||||||| |||||||||||||| || ||||||||||||| Sbjct: 126150 tcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaa 126209 Query: 189 ttataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctt 248 | |||||||| |||||||| |||||||| |||||||||||||||||||||||||| |||| Sbjct: 126210 tgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctt 126269 Query: 249 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 126270 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 126329 Query: 309 atgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccag 368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 126330 ctgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactag 126389 Query: 369 cagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattta 428 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct: 126390 cagctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattta 126449 Query: 429 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 488 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 126450 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 126509 Query: 489 atgaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||||| |||| Sbjct: 126510 atgaaagaaatattgtctttccagaaagaagaacc 126544 Score = 101 bits (51), Expect = 3e-18 Identities = 81/90 (90%), Gaps = 1/90 (1%) Strand = Plus / Plus Query: 560 tatatctctaatcgaataaattgacttcgtatggggcattttactggccgctatggagat 619 ||||| ||||| |||| |||||||||||||||||| |||||| ||||| |||||||| || Sbjct: 126582 tatatttctaaccgaagaaattgacttcgtatggg-cattttgctggcagctatggaaat 126640 Query: 620 agctgctctagctacagnttcagatactcc 649 ||||||||||||||||| ||| |||||||| Sbjct: 126641 agctgctctagctacagtttcggatactcc 126670
>emb|X15901.1|CHOSXX Oryza sativa (japonica cultivar-group) chloroplast genome Length = 134525 Score = 783 bits (395), Expect = 0.0 Identities = 440/455 (96%) Strand = Plus / Plus Query: 69 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctc 128 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 77238 ctactagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctc 77297 Query: 129 tcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaa 188 ||||||||||||| |||||||||||||| |||||||||||||| || ||||||||||||| Sbjct: 77298 tcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaa 77357 Query: 189 ttataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctt 248 | |||||||| |||||||| |||||||| |||||||||||||||||||||||||| |||| Sbjct: 77358 tgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctt 77417 Query: 249 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77418 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 77477 Query: 309 atgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccag 368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 77478 ctgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactag 77537 Query: 369 cagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattta 428 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct: 77538 cagctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattta 77597 Query: 429 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 488 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77598 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 77657 Query: 489 atgaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||||| |||| Sbjct: 77658 atgaaagaaatattgtctttccagaaagaagaacc 77692 Score = 85.7 bits (43), Expect = 2e-13 Identities = 79/90 (87%), Gaps = 1/90 (1%) Strand = Plus / Plus Query: 560 tatatctctaatcgaataaattgacttcgtatggggcattttactggccgctatggagat 619 ||||| ||||| |||| |||||||||||||||||| |||||| ||||| |||||||| || Sbjct: 77730 tatatttctaaccgaagaaattgacttcgtatggg-cattttgctggcagctatggaaat 77788 Query: 620 agctgctctagctacagnttcagatactcc 649 |||| ||||||||||| ||| |||||||| Sbjct: 77789 agctcgtctagctacagtttcggatactcc 77818
>emb|BX569685.1|OSJN00291 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0061C08, complete sequence Length = 145980 Score = 783 bits (395), Expect = 0.0 Identities = 440/455 (96%) Strand = Plus / Minus Query: 69 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctc 128 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 73542 ctactagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctc 73483 Query: 129 tcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaa 188 ||||||||||||| |||||||||||||| |||||||||||||| || ||||||||||||| Sbjct: 73482 tcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaa 73423 Query: 189 ttataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctt 248 | |||||||| |||||||| |||||||| |||||||||||||||||||||||||| |||| Sbjct: 73422 tgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctt 73363 Query: 249 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 73362 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 73303 Query: 309 atgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccag 368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 73302 ctgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactag 73243 Query: 369 cagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattta 428 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct: 73242 cagctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattta 73183 Query: 429 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 488 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 73182 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 73123 Query: 489 atgaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||||| |||| Sbjct: 73122 atgaaagaaatattgtctttccagaaagaagaacc 73088 Score = 93.7 bits (47), Expect = 7e-16 Identities = 80/90 (88%), Gaps = 1/90 (1%) Strand = Plus / Minus Query: 560 tatatctctaatcgaataaattgacttcgtatggggcattttactggccgctatggagat 619 ||||| ||||| |||| |||||||||||||||||| |||||| ||||| |||||||| || Sbjct: 73009 tatatttctaaccgaagaaattgacttcgtatggg-cattttgctggcagctatggaaat 72951 Query: 620 agctgctctagctacagnttcagatactcc 649 |||| |||||||||||| ||| |||||||| Sbjct: 72950 agctactctagctacagtttcggatactcc 72921 Score = 48.1 bits (24), Expect = 0.037 Identities = 33/36 (91%) Strand = Plus / Minus Query: 560 tatatctctaatcgaataaattgacttcgtatgggg 595 ||||| ||||| |||| ||||||||||||||||||| Sbjct: 73049 tatatttctaaccgaagaaattgacttcgtatgggg 73014
>gb|AC122148.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAb0075K12, complete sequence Length = 125936 Score = 783 bits (395), Expect = 0.0 Identities = 440/455 (96%) Strand = Plus / Plus Query: 69 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctc 128 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 75439 ctactagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctc 75498 Query: 129 tcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaa 188 ||||||||||||| |||||||||||||| |||||||||||||| || ||||||||||||| Sbjct: 75499 tcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaa 75558 Query: 189 ttataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctt 248 | |||||||| |||||||| |||||||| |||||||||||||||||||||||||| |||| Sbjct: 75559 tgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctt 75618 Query: 249 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 75619 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 75678 Query: 309 atgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccag 368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 75679 ctgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactag 75738 Query: 369 cagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattta 428 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct: 75739 cagctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattta 75798 Query: 429 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 488 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 75799 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 75858 Query: 489 atgaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||||| |||| Sbjct: 75859 atgaaagaaatattgtctttccagaaagaagaacc 75893 Score = 93.7 bits (47), Expect = 7e-16 Identities = 80/90 (88%), Gaps = 1/90 (1%) Strand = Plus / Plus Query: 560 tatatctctaatcgaataaattgacttcgtatggggcattttactggccgctatggagat 619 ||||| ||||| |||| |||||||||||||||||| |||||| ||||| |||||||| || Sbjct: 75932 tatatttctaaccgaagaaattgacttcgtatggg-cattttgctggcagctatggaaat 75990 Query: 620 agctgctctagctacagnttcagatactcc 649 |||| |||||||||||| ||| |||||||| Sbjct: 75991 agctactctagctacagtttcggatactcc 76020
>gb|AC099402.2| Oryza sativa chromosome 10 clone OSJNBa0022D10, complete sequence Length = 144459 Score = 783 bits (395), Expect = 0.0 Identities = 440/455 (96%) Strand = Plus / Plus Query: 69 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctc 128 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 9503 ctactagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctc 9562 Query: 129 tcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaa 188 ||||||||||||| |||||||||||||| |||||||||||||| || ||||||||||||| Sbjct: 9563 tcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaa 9622 Query: 189 ttataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctt 248 | |||||||| |||||||| |||||||| |||||||||||||||||||||||||| |||| Sbjct: 9623 tgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctt 9682 Query: 249 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9683 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 9742 Query: 309 atgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccag 368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 9743 ctgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactag 9802 Query: 369 cagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattta 428 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct: 9803 cagctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattta 9862 Query: 429 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 488 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9863 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 9922 Query: 489 atgaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||||| |||| Sbjct: 9923 atgaaagaaatattgtctttccagaaagaagaacc 9957 Score = 93.7 bits (47), Expect = 7e-16 Identities = 80/90 (88%), Gaps = 1/90 (1%) Strand = Plus / Plus Query: 560 tatatctctaatcgaataaattgacttcgtatggggcattttactggccgctatggagat 619 ||||| ||||| |||| |||||||||||||||||| |||||| ||||| |||||||| || Sbjct: 9996 tatatttctaaccgaagaaattgacttcgtatggg-cattttgctggcagctatggaaat 10054 Query: 620 agctgctctagctacagnttcagatactcc 649 |||| |||||||||||| ||| |||||||| Sbjct: 10055 agctactctagctacagtttcggatactcc 10084
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 783 bits (395), Expect = 0.0 Identities = 440/455 (96%) Strand = Plus / Minus Query: 69 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctc 128 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 9192469 ctactagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctc 9192410 Query: 129 tcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaa 188 ||||||||||||| |||||||||||||| |||||||||||||| || ||||||||||||| Sbjct: 9192409 tcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaa 9192350 Query: 189 ttataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctt 248 | |||||||| |||||||| |||||||| |||||||||||||||||||||||||| |||| Sbjct: 9192349 tgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctt 9192290 Query: 249 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9192289 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 9192230 Query: 309 atgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccag 368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 9192229 ctgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactag 9192170 Query: 369 cagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattta 428 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct: 9192169 cagctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattta 9192110 Query: 429 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 488 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9192109 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 9192050 Query: 489 atgaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||||| |||| Sbjct: 9192049 atgaaagaaatattgtctttccagaaagaagaacc 9192015 Score = 783 bits (395), Expect = 0.0 Identities = 440/455 (96%) Strand = Plus / Minus Query: 69 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctc 128 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 9115516 ctactagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctc 9115457 Query: 129 tcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaa 188 ||||||||||||| |||||||||||||| |||||||||||||| || ||||||||||||| Sbjct: 9115456 tcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaa 9115397 Query: 189 ttataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctt 248 | |||||||| |||||||| |||||||| |||||||||||||||||||||||||| |||| Sbjct: 9115396 tgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctt 9115337 Query: 249 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9115336 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 9115277 Query: 309 atgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccag 368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 9115276 ctgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactag 9115217 Query: 369 cagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattta 428 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct: 9115216 cagctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattta 9115157 Query: 429 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 488 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9115156 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 9115097 Query: 489 atgaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||||| |||| Sbjct: 9115096 atgaaagaaatattgtctttccagaaagaagaacc 9115062 Score = 93.7 bits (47), Expect = 7e-16 Identities = 80/90 (88%), Gaps = 1/90 (1%) Strand = Plus / Minus Query: 560 tatatctctaatcgaataaattgacttcgtatggggcattttactggccgctatggagat 619 ||||| ||||| |||| |||||||||||||||||| |||||| ||||| |||||||| || Sbjct: 9191936 tatatttctaaccgaagaaattgacttcgtatggg-cattttgctggcagctatggaaat 9191878 Query: 620 agctgctctagctacagnttcagatactcc 649 |||| |||||||||||| ||| |||||||| Sbjct: 9191877 agctactctagctacagtttcggatactcc 9191848 Score = 93.7 bits (47), Expect = 7e-16 Identities = 80/90 (88%), Gaps = 1/90 (1%) Strand = Plus / Minus Query: 560 tatatctctaatcgaataaattgacttcgtatggggcattttactggccgctatggagat 619 ||||| ||||| |||| |||||||||||||||||| |||||| ||||| |||||||| || Sbjct: 9114983 tatatttctaaccgaagaaattgacttcgtatggg-cattttgctggcagctatggaaat 9114925 Query: 620 agctgctctagctacagnttcagatactcc 649 |||| |||||||||||| ||| |||||||| Sbjct: 9114924 agctactctagctacagtttcggatactcc 9114895 Score = 85.7 bits (43), Expect = 2e-13 Identities = 49/51 (96%) Strand = Plus / Minus Query: 255 tacgtacaattacagctcgaattacttcggatctttctagaggcatttggg 305 |||||||||||||||||| |||||||||||||||||| ||||||||||||| Sbjct: 17722552 tacgtacaattacagctcaaattacttcggatctttccagaggcatttggg 17722502 Score = 77.8 bits (39), Expect = 4e-11 Identities = 73/84 (86%), Gaps = 4/84 (4%) Strand = Plus / Plus Query: 246 ctttacatgtacgtacaattacagctcgaattact----tcggatctttctagaggcatt 301 |||||||||||||||||||||||||||| ||||| || |||||||||||||||||| Sbjct: 2072703 ctttacatgtacgtacaattacagctcgtcttacttctgtctgatctttctagaggcatt 2072762 Query: 302 tggggcaatgcgtctttgattaca 325 | ||||| ||| |||||| ||||| Sbjct: 2072763 ttgggcactgcttctttggttaca 2072786 Score = 48.1 bits (24), Expect = 0.037 Identities = 33/36 (91%) Strand = Plus / Minus Query: 560 tatatctctaatcgaataaattgacttcgtatgggg 595 ||||| ||||| |||| ||||||||||||||||||| Sbjct: 9191976 tatatttctaaccgaagaaattgacttcgtatgggg 9191941 Score = 48.1 bits (24), Expect = 0.037 Identities = 33/36 (91%) Strand = Plus / Minus Query: 560 tatatctctaatcgaataaattgacttcgtatgggg 595 ||||| ||||| |||| ||||||||||||||||||| Sbjct: 9115023 tatatttctaaccgaagaaattgacttcgtatgggg 9114988
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 783 bits (395), Expect = 0.0 Identities = 440/455 (96%) Strand = Plus / Plus Query: 69 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctc 128 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 10369047 ctactagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctc 10369106 Query: 129 tcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaa 188 ||||||||||||| |||||||||||||| |||||||||||||| || ||||||||||||| Sbjct: 10369107 tcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaa 10369166 Query: 189 ttataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctt 248 | |||||||| |||||||| |||||||| |||||||||||||||||||||||||| |||| Sbjct: 10369167 tgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctt 10369226 Query: 249 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10369227 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 10369286 Query: 309 atgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccag 368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 10369287 ctgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactag 10369346 Query: 369 cagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattta 428 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct: 10369347 cagctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattta 10369406 Query: 429 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 488 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10369407 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 10369466 Query: 489 atgaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||||| |||| Sbjct: 10369467 atgaaagaaatattgtctttccagaaagaagaacc 10369501 Score = 155 bits (78), Expect = 2e-34 Identities = 144/165 (87%), Gaps = 7/165 (4%) Strand = Plus / Minus Query: 238 tttgaattctttacatgtacgtacaattacagctcgaattacttcgg----atctttcta 293 ||||| |||||||||||||||||||||||||||||| ||||||| | ||||||||| Sbjct: 14021582 tttgagttctttacatgtacgtacaattacagctcgtcttacttctgtctgatctttcta 14021523 Query: 294 gaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagcat 353 ||||||||| ||||| ||| ||||||||||||||||||||||| ||||||||| |||||| Sbjct: 14021522 gaggcattttgggcactgcttctttgattacagcaacaataacgtcaccaatatgagcat 14021463 Query: 354 atcgctgattaccagcagctcctatgactcgaatacacatcaatt 398 ||| ||||||| ||||||||| || ||||||||| ||||||| Sbjct: 14021462 atcagtgattac---cagctcctaagattcgaatacatatcaatt 14021421 Score = 93.7 bits (47), Expect = 7e-16 Identities = 80/90 (88%), Gaps = 1/90 (1%) Strand = Plus / Plus Query: 560 tatatctctaatcgaataaattgacttcgtatggggcattttactggccgctatggagat 619 ||||| ||||| |||| |||||||||||||||||| |||||| ||||| |||||||| || Sbjct: 10369540 tatatttctaaccgaagaaattgacttcgtatggg-cattttgctggcagctatggaaat 10369598 Query: 620 agctgctctagctacagnttcagatactcc 649 |||| |||||||||||| ||| |||||||| Sbjct: 10369599 agctactctagctacagtttcggatactcc 10369628
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 783 bits (395), Expect = 0.0 Identities = 440/455 (96%) Strand = Plus / Minus Query: 69 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctc 128 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 9259811 ctactagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctc 9259752 Query: 129 tcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaa 188 ||||||||||||| |||||||||||||| |||||||||||||| || ||||||||||||| Sbjct: 9259751 tcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaa 9259692 Query: 189 ttataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctt 248 | |||||||| |||||||| |||||||| |||||||||||||||||||||||||| |||| Sbjct: 9259691 tgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctt 9259632 Query: 249 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9259631 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 9259572 Query: 309 atgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccag 368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 9259571 ctgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactag 9259512 Query: 369 cagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattta 428 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct: 9259511 cagctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattta 9259452 Query: 429 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 488 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9259451 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 9259392 Query: 489 atgaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||||| |||| Sbjct: 9259391 atgaaagaaatattgtctttccagaaagaagaacc 9259357 Score = 242 bits (122), Expect = 1e-60 Identities = 158/170 (92%) Strand = Plus / Minus Query: 178 tttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtcttcgca 237 |||||||||||| |||||| | ||||||| |||||||| ||||||||||| |||||||| Sbjct: 10791213 tttttgatcaatgataacctctgcattgttgtcatagcgtattattataccatcttcgca 10791154 Query: 238 tttgaattctttacatgtacgtacaattacagctcgaattacttcggatctttctagagg 297 |||||| |||||||||||| ||||||||||| ||| |||||||||||||||||||||||| Sbjct: 10791153 tttgaactctttacatgtatgtacaattacacctcaaattacttcggatctttctagagg 10791094 Query: 298 catttggggcaatgcgtctttgattacagcaacaataacatcaccaatac 347 ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 10791093 catttggggcactgcgtctttgattacagcaacaataacatcaccaatac 10791044 Score = 186 bits (94), Expect = 6e-44 Identities = 146/162 (90%), Gaps = 1/162 (0%) Strand = Plus / Plus Query: 82 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 141 |||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 17206218 taatacttcatgagcttatgaaactattttagtaaaattcaattctctcaattcctcggc 17206277 Query: 142 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 201 || ||||||||||| | |||||| ||||| || ||||||| |||||| ||||||||||| Sbjct: 17206278 cattgcgccaaaaacgcaagttccatttggattcccttttt-atcaatgataaccgcagc 17206336 Query: 202 attgtcatcatagcggattattataccgtcttcgcatttgaa 243 | ||| |||||||| |||||||||||||||||||||||||| Sbjct: 17206337 actgttgtcatagcgtattattataccgtcttcgcatttgaa 17206378 Score = 93.7 bits (47), Expect = 7e-16 Identities = 80/90 (88%), Gaps = 1/90 (1%) Strand = Plus / Minus Query: 560 tatatctctaatcgaataaattgacttcgtatggggcattttactggccgctatggagat 619 ||||| ||||| |||| |||||||||||||||||| |||||| ||||| |||||||| || Sbjct: 9259318 tatatttctaaccgaagaaattgacttcgtatggg-cattttgctggcagctatggaaat 9259260 Query: 620 agctgctctagctacagnttcagatactcc 649 |||| |||||||||||| ||| |||||||| Sbjct: 9259259 agctactctagctacagtttcggatactcc 9259230
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 783 bits (395), Expect = 0.0 Identities = 440/455 (96%) Strand = Plus / Plus Query: 69 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctc 128 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 12755803 ctactagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctc 12755862 Query: 129 tcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaa 188 ||||||||||||| |||||||||||||| |||||||||||||| || ||||||||||||| Sbjct: 12755863 tcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaa 12755922 Query: 189 ttataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctt 248 | |||||||| |||||||| |||||||| |||||||||||||||||||||||||| |||| Sbjct: 12755923 tgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctt 12755982 Query: 249 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12755983 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 12756042 Query: 309 atgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccag 368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 12756043 ctgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactag 12756102 Query: 369 cagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattta 428 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct: 12756103 cagctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattta 12756162 Query: 429 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 488 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12756163 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 12756222 Query: 489 atgaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||||| |||| Sbjct: 12756223 atgaaagaaatattgtctttccagaaagaagaacc 12756257 Score = 735 bits (371), Expect = 0.0 Identities = 434/455 (95%) Strand = Plus / Minus Query: 69 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctc 128 ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| Sbjct: 19545778 ctactagtatttataatacttcaggagctaatgaaactagtttagtaaaattcaattctc 19545719 Query: 129 tcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaa 188 ||||||||||| | |||| ||||||||| |||||||||||||| || ||||||||||||| Sbjct: 19545718 tcaattcctcgacgatcgtgccaaaaacgcgagttccttttggatttcctttttgatcaa 19545659 Query: 189 ttataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctt 248 | |||||||| |||||||| |||||||| |||||||||||||||||||||||||| |||| Sbjct: 19545658 tgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctt 19545599 Query: 249 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 308 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 19545598 tacatgtacgtacaattacagctcgaattacttgagatctttctagaggcatttggggca 19545539 Query: 309 atgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccag 368 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || Sbjct: 19545538 ctgcgtctttgattacagcaacaataacatcaccaatacgagcatattgctgattactag 19545479 Query: 369 cagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattta 428 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct: 19545478 cagctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattta 19545419 Query: 429 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 488 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 19545418 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 19545359 Query: 489 atgaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||||| |||| Sbjct: 19545358 atgaaagaaatattgtctttccagaaagaagaacc 19545324 Score = 351 bits (177), Expect = 2e-93 Identities = 195/201 (97%) Strand = Plus / Minus Query: 193 aaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttaca 252 |||||| |||||||| |||||||| |||||||||||||||||||||||||| |||||||| Sbjct: 3036155 aaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttaca 3036096 Query: 253 tgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgc 312 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 3036095 tgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgc 3036036 Query: 313 gtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagc 372 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 3036035 gtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagc 3035976 Query: 373 tcctatgactcgaatacacat 393 ||||||||||||||||||||| Sbjct: 3035975 tcctatgactcgaatacacat 3035955 Score = 174 bits (88), Expect = 2e-40 Identities = 235/280 (83%), Gaps = 3/280 (1%) Strand = Plus / Plus Query: 98 aatgaaactattttggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaact 157 ||||||| |||||| || |||||||||||||||||||| |||| ||| ||||||||| Sbjct: 3109053 aatgaaattattttaatacaattcaattctctcaattcc-cggcgatcatgccaaaaacg 3109111 Query: 158 cgagttccttttgggttgcctttttgatcaattataaccgcagcattgtcatcatagcgg 217 |||| || ||||| || | ||||||||| || ||||||| | || || ||||||| Sbjct: 3109112 tgagtgccctttggatttcttttttgatcgatgataaccgttgtata-tcggcatagcgt 3109170 Query: 218 attattataccgtcttcgcatttgaattctttacatgtacgtacaattacagctcgaatt 277 |||||||||| || ||| |||||||| ||||||||||||| || |||||| ||| |||| Sbjct: 3109171 attattatactgt-ttcacatttgaactctttacatgtacatataattacttctctaatt 3109229 Query: 278 acttcggatctttctagaggcatttggggcaatgcgtctttgattacagcaacaataaca 337 |||| || ||||||||||||||||||||||| ||| ||||| |||||||||||||||||| Sbjct: 3109230 actttgggtctttctagaggcatttggggcactgcatctttcattacagcaacaataaca 3109289 Query: 338 tcaccaatacgagcatatcgctgattaccagcagctccta 377 ||| ||||| |||||||| | ||||||| |||||| |||| Sbjct: 3109290 tcatcaatatgagcatattgttgattactagcagcaccta 3109329 Score = 107 bits (54), Expect = 5e-20 Identities = 60/62 (96%) Strand = Plus / Plus Query: 420 ctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaa 479 |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 3109364 ctacatttaaaagggtttgaggttgaatcatattattttgatgtcaatttgttatttcaa 3109423 Query: 480 tg 481 || Sbjct: 3109424 tg 3109425 Score = 101 bits (51), Expect = 3e-18 Identities = 81/90 (90%), Gaps = 1/90 (1%) Strand = Plus / Plus Query: 560 tatatctctaatcgaataaattgacttcgtatggggcattttactggccgctatggagat 619 ||||| ||||| |||| |||||||||||||||||| |||||| ||||| |||||||| || Sbjct: 12756295 tatatttctaaccgaagaaattgacttcgtatggg-cattttgctggcagctatggaaat 12756353 Query: 620 agctgctctagctacagnttcagatactcc 649 ||||||||||||||||| ||| |||||||| Sbjct: 12756354 agctgctctagctacagtttcggatactcc 12756383 Score = 91.7 bits (46), Expect = 3e-15 Identities = 79/89 (88%), Gaps = 1/89 (1%) Strand = Plus / Minus Query: 560 tatatctctaatcgaataaattgacttcgtatggggcattttactggccgctatggagat 619 ||||| ||||| |||| |||||||||||||||||| |||||| ||||| |||||||| || Sbjct: 19545285 tatatttctaaccgaagaaattgacttcgtatggg-cattttgctggcagctatggaaat 19545227 Query: 620 agctgctctagctacagnttcagatactc 648 |||||||||||||| || ||| ||||||| Sbjct: 19545226 agctgctctagctatagtttcggatactc 19545198 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 461 tttcaatttgttatttcaatgcaaa 485 ||||||||||| ||||||||||||| Sbjct: 4108954 tttcaatttgtaatttcaatgcaaa 4108978
>dbj|AP005161.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0036E18 Length = 141148 Score = 783 bits (395), Expect = 0.0 Identities = 440/455 (96%) Strand = Plus / Minus Query: 69 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctc 128 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 71024 ctactagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctc 70965 Query: 129 tcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaa 188 ||||||||||||| |||||||||||||| |||||||||||||| || ||||||||||||| Sbjct: 70964 tcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaa 70905 Query: 189 ttataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctt 248 | |||||||| |||||||| |||||||| |||||||||||||||||||||||||| |||| Sbjct: 70904 tgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctt 70845 Query: 249 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 70844 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 70785 Query: 309 atgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccag 368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 70784 ctgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactag 70725 Query: 369 cagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattta 428 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct: 70724 cagctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattta 70665 Query: 429 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 488 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 70664 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 70605 Query: 489 atgaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||||| |||| Sbjct: 70604 atgaaagaaatattgtctttccagaaagaagaacc 70570 Score = 93.7 bits (47), Expect = 7e-16 Identities = 80/90 (88%), Gaps = 1/90 (1%) Strand = Plus / Minus Query: 560 tatatctctaatcgaataaattgacttcgtatggggcattttactggccgctatggagat 619 ||||| ||||| |||| |||||||||||||||||| |||||| ||||| |||||||| || Sbjct: 70531 tatatttctaaccgaagaaattgacttcgtatggg-cattttgctggcagctatggaaat 70473 Query: 620 agctgctctagctacagnttcagatactcc 649 |||| |||||||||||| ||| |||||||| Sbjct: 70472 agctactctagctacagtttcggatactcc 70443
>dbj|AK105308.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-117-B12, full insert sequence Length = 2166 Score = 783 bits (395), Expect = 0.0 Identities = 440/455 (96%) Strand = Plus / Minus Query: 69 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctc 128 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 1482 ctactagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctc 1423 Query: 129 tcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaa 188 ||||||||||||| |||||||||||||| |||||||||||||| || ||||||||||||| Sbjct: 1422 tcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaa 1363 Query: 189 ttataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctt 248 | |||||||| |||||||| |||||||| |||||||||||||||||||||||||| |||| Sbjct: 1362 tgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctt 1303 Query: 249 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1302 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 1243 Query: 309 atgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccag 368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 1242 ctgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactag 1183 Query: 369 cagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattta 428 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct: 1182 cagctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattta 1123 Query: 429 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 488 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1122 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 1063 Query: 489 atgaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||||| |||| Sbjct: 1062 atgaaagaaatattgtctttccagaaagaagaacc 1028 Score = 101 bits (51), Expect = 3e-18 Identities = 81/90 (90%), Gaps = 1/90 (1%) Strand = Plus / Minus Query: 560 tatatctctaatcgaataaattgacttcgtatggggcattttactggccgctatggagat 619 ||||| ||||| |||| |||||||||||||||||| |||||| ||||| |||||||| || Sbjct: 990 tatatttctaaccgaagaaattgacttcgtatggg-cattttgctggcagctatggaaat 932 Query: 620 agctgctctagctacagnttcagatactcc 649 ||||||||||||||||| ||| |||||||| Sbjct: 931 agctgctctagctacagtttcggatactcc 902
>dbj|AK071967.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013084G06, full insert sequence Length = 1764 Score = 783 bits (395), Expect = 0.0 Identities = 440/455 (96%) Strand = Plus / Minus Query: 69 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctc 128 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 1697 ctactagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctc 1638 Query: 129 tcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaa 188 ||||||||||||| |||||||||||||| |||||||||||||| || ||||||||||||| Sbjct: 1637 tcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaa 1578 Query: 189 ttataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctt 248 | |||||||| |||||||| |||||||| |||||||||||||||||||||||||| |||| Sbjct: 1577 tgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctt 1518 Query: 249 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1517 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 1458 Query: 309 atgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccag 368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 1457 ctgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactag 1398 Query: 369 cagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattta 428 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct: 1397 cagctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattta 1338 Query: 429 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 488 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1337 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 1278 Query: 489 atgaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||||| |||| Sbjct: 1277 atgaaagaaatattgtctttccagaaagaagaacc 1243 Score = 101 bits (51), Expect = 3e-18 Identities = 81/90 (90%), Gaps = 1/90 (1%) Strand = Plus / Minus Query: 560 tatatctctaatcgaataaattgacttcgtatggggcattttactggccgctatggagat 619 ||||| ||||| |||| |||||||||||||||||| |||||| ||||| |||||||| || Sbjct: 1205 tatatttctaaccgaagaaattgacttcgtatggg-cattttgctggcagctatggaaat 1147 Query: 620 agctgctctagctacagnttcagatactcc 649 ||||||||||||||||| ||| |||||||| Sbjct: 1146 agctgctctagctacagtttcggatactcc 1117
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 783 bits (395), Expect = 0.0 Identities = 440/455 (96%) Strand = Plus / Plus Query: 69 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctc 128 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 10375086 ctactagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctc 10375145 Query: 129 tcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaa 188 ||||||||||||| |||||||||||||| |||||||||||||| || ||||||||||||| Sbjct: 10375146 tcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaa 10375205 Query: 189 ttataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctt 248 | |||||||| |||||||| |||||||| |||||||||||||||||||||||||| |||| Sbjct: 10375206 tgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctt 10375265 Query: 249 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10375266 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 10375325 Query: 309 atgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccag 368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 10375326 ctgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactag 10375385 Query: 369 cagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattta 428 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct: 10375386 cagctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattta 10375445 Query: 429 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 488 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10375446 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 10375505 Query: 489 atgaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||||| |||| Sbjct: 10375506 atgaaagaaatattgtctttccagaaagaagaacc 10375540 Score = 155 bits (78), Expect = 2e-34 Identities = 144/165 (87%), Gaps = 7/165 (4%) Strand = Plus / Minus Query: 238 tttgaattctttacatgtacgtacaattacagctcgaattacttcgg----atctttcta 293 ||||| |||||||||||||||||||||||||||||| ||||||| | ||||||||| Sbjct: 14029824 tttgagttctttacatgtacgtacaattacagctcgtcttacttctgtctgatctttcta 14029765 Query: 294 gaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagcat 353 ||||||||| ||||| ||| ||||||||||||||||||||||| ||||||||| |||||| Sbjct: 14029764 gaggcattttgggcactgcttctttgattacagcaacaataacgtcaccaatatgagcat 14029705 Query: 354 atcgctgattaccagcagctcctatgactcgaatacacatcaatt 398 ||| ||||||| ||||||||| || ||||||||| ||||||| Sbjct: 14029704 atcagtgattac---cagctcctaagattcgaatacatatcaatt 14029663 Score = 93.7 bits (47), Expect = 7e-16 Identities = 80/90 (88%), Gaps = 1/90 (1%) Strand = Plus / Plus Query: 560 tatatctctaatcgaataaattgacttcgtatggggcattttactggccgctatggagat 619 ||||| ||||| |||| |||||||||||||||||| |||||| ||||| |||||||| || Sbjct: 10375579 tatatttctaaccgaagaaattgacttcgtatggg-cattttgctggcagctatggaaat 10375637 Query: 620 agctgctctagctacagnttcagatactcc 649 |||| |||||||||||| ||| |||||||| Sbjct: 10375638 agctactctagctacagtttcggatactcc 10375667
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 775 bits (391), Expect = 0.0 Identities = 439/455 (96%) Strand = Plus / Plus Query: 69 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctc 128 ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| Sbjct: 5656701 ctactagtatttataatacttcaggagctaatgaaactattgtagtaaaattcaattctc 5656760 Query: 129 tcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaa 188 ||||||||||||| |||||||||||||| |||||||||||||| || ||||||||||||| Sbjct: 5656761 tcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaa 5656820 Query: 189 ttataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctt 248 | |||||||| |||||||| |||||||| |||||||||||||||||||||||||| |||| Sbjct: 5656821 tgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctt 5656880 Query: 249 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5656881 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 5656940 Query: 309 atgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccag 368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 5656941 ctgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactag 5657000 Query: 369 cagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattta 428 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct: 5657001 cagctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattta 5657060 Query: 429 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 488 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5657061 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 5657120 Query: 489 atgaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||||| |||| Sbjct: 5657121 atgaaagaaatattgtctttccagaaagaagaacc 5657155 Score = 363 bits (183), Expect = 5e-97 Identities = 213/223 (95%) Strand = Plus / Plus Query: 69 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctc 128 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 20514213 ctactagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctc 20514272 Query: 129 tcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaa 188 ||||||||||||| |||||||||||||| |||||||||||||| || ||||||||||||| Sbjct: 20514273 tcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaa 20514332 Query: 189 ttataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctt 248 | |||||||| |||||||| |||||||| |||||||||||||||||||||||||| |||| Sbjct: 20514333 tgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctt 20514392 Query: 249 tacatgtacgtacaattacagctcgaattacttcggatctttc 291 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 20514393 tacatgtacgtacaattacagctcgaattacttcggatctttc 20514435 Score = 85.7 bits (43), Expect = 2e-13 Identities = 79/90 (87%), Gaps = 1/90 (1%) Strand = Plus / Plus Query: 560 tatatctctaatcgaataaattgacttcgtatggggcattttactggccgctatggagat 619 ||||| ||||| |||| ||||||||||||||| ||||||||| ||||| |||||||| || Sbjct: 5657194 tatatttctaaccgaagaaattgacttcgtat-gggcattttgctggcagctatggaaat 5657252 Query: 620 agctgctctagctacagnttcagatactcc 649 ||||||| |||||||| ||| |||||||| Sbjct: 5657253 agctgctatagctacaatttcggatactcc 5657282 Score = 54.0 bits (27), Expect = 6e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 105 ctattttggtaaaattcaattctctcaattc 135 ||||||| ||||||||||||||||||||||| Sbjct: 25823760 ctattttagtaaaattcaattctctcaattc 25823730
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 775 bits (391), Expect = 0.0 Identities = 439/455 (96%) Strand = Plus / Plus Query: 69 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctc 128 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 33497017 ctactagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctc 33497076 Query: 129 tcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaa 188 ||||||||||||| |||||||||||||| |||||||||||||| || ||||||||||||| Sbjct: 33497077 tcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaa 33497136 Query: 189 ttataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctt 248 | |||||||| |||||||| |||||||| |||||||||||||||||||||||||| |||| Sbjct: 33497137 tgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctt 33497196 Query: 249 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 33497197 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 33497256 Query: 309 atgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccag 368 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 33497257 ctgcatctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactag 33497316 Query: 369 cagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattta 428 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct: 33497317 cagctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattta 33497376 Query: 429 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 488 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 33497377 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 33497436 Query: 489 atgaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||||| |||| Sbjct: 33497437 atgaaagaaatattgtctttccagaaagaagaacc 33497471 Score = 145 bits (73), Expect = 2e-31 Identities = 160/189 (84%) Strand = Plus / Minus Query: 167 tttgggttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattata 226 ||||| || |||||||||||||| ||||| | ||||||| | |||| | ||||||||| Sbjct: 30976459 tttggatttcctttttgatcaatgataacgactgcattgttgttatagagtattattata 30976400 Query: 227 ccgtcttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggat 286 |||| || ||||||||| || |||||||| | |||||||||| ||| ||||||| ||| Sbjct: 30976399 ccgtttttgcatttgaaatccatacatgtatgcacaattacagatcgtattacttttgat 30976340 Query: 287 ctttctagaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaata 346 |||||||||||||| | || || ||| ||||| ||||||||||||||||||||||||||| Sbjct: 30976339 ctttctagaggcatcttggacactgcatcttttattacagcaacaataacatcaccaata 30976280 Query: 347 cgagcatat 355 |||| |||| Sbjct: 30976279 cgagtatat 30976271 Score = 93.7 bits (47), Expect = 7e-16 Identities = 80/90 (88%), Gaps = 1/90 (1%) Strand = Plus / Plus Query: 560 tatatctctaatcgaataaattgacttcgtatggggcattttactggccgctatggagat 619 ||||| ||||| |||| |||||||||||||||||| |||||| ||||| |||||||| || Sbjct: 33497509 tatatttctaaccgaagaaattgacttcgtatggg-cattttgctggcagctatggaaat 33497567 Query: 620 agctgctctagctacagnttcagatactcc 649 |||| |||||||||||| ||| |||||||| Sbjct: 33497568 agctactctagctacagtttcggatactcc 33497597 Score = 69.9 bits (35), Expect = 1e-08 Identities = 101/124 (81%), Gaps = 8/124 (6%) Strand = Plus / Minus Query: 149 ccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtca 208 ||||||||||||||||||||||| || |||| ||||| ||| | ||||| ||| Sbjct: 39109319 ccaaaaactcgagttccttttggatttccttcttgattaatgacaaccg--------tca 39109268 Query: 209 tcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattaca 268 ||||| || ||||| ||||||| || | ||||| |||||||||||||||||||||||| Sbjct: 39109267 tcatatcgtattatcataccgttgtcacgtttgagttctttacatgtacgtacaattact 39109208 Query: 269 gctc 272 |||| Sbjct: 39109207 gctc 39109204 Score = 50.1 bits (25), Expect = 0.009 Identities = 34/37 (91%) Strand = Plus / Minus Query: 149 ccaaaaactcgagttccttttgggttgcctttttgat 185 ||||||||||||||||||||||| || |||| ||||| Sbjct: 39108053 ccaaaaactcgagttccttttggatttccttcttgat 39108017 Score = 50.1 bits (25), Expect = 0.009 Identities = 34/37 (91%) Strand = Plus / Minus Query: 149 ccaaaaactcgagttccttttgggttgcctttttgat 185 ||||||||||||||||||||||| || |||| ||||| Sbjct: 39103979 ccaaaaactcgagttccttttggatttccttcttgat 39103943
>dbj|AP003280.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0557A01 Length = 147201 Score = 775 bits (391), Expect = 0.0 Identities = 439/455 (96%) Strand = Plus / Plus Query: 69 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctc 128 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 42214 ctactagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctc 42273 Query: 129 tcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaa 188 ||||||||||||| |||||||||||||| |||||||||||||| || ||||||||||||| Sbjct: 42274 tcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaa 42333 Query: 189 ttataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctt 248 | |||||||| |||||||| |||||||| |||||||||||||||||||||||||| |||| Sbjct: 42334 tgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctt 42393 Query: 249 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 42394 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 42453 Query: 309 atgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccag 368 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 42454 ctgcatctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactag 42513 Query: 369 cagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattta 428 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct: 42514 cagctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattta 42573 Query: 429 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 488 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 42574 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 42633 Query: 489 atgaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||||| |||| Sbjct: 42634 atgaaagaaatattgtctttccagaaagaagaacc 42668 Score = 93.7 bits (47), Expect = 7e-16 Identities = 80/90 (88%), Gaps = 1/90 (1%) Strand = Plus / Plus Query: 560 tatatctctaatcgaataaattgacttcgtatggggcattttactggccgctatggagat 619 ||||| ||||| |||| |||||||||||||||||| |||||| ||||| |||||||| || Sbjct: 42706 tatatttctaaccgaagaaattgacttcgtatggg-cattttgctggcagctatggaaat 42764 Query: 620 agctgctctagctacagnttcagatactcc 649 |||| |||||||||||| ||| |||||||| Sbjct: 42765 agctactctagctacagtttcggatactcc 42794
>dbj|AK063122.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-111-E09, full insert sequence Length = 792 Score = 775 bits (391), Expect = 0.0 Identities = 439/455 (96%) Strand = Plus / Minus Query: 69 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctc 128 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 731 ctactagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctc 672 Query: 129 tcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaa 188 ||||||||||||| |||||||||||||| |||||||||||||| || ||||||||||||| Sbjct: 671 tcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaa 612 Query: 189 ttataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctt 248 | |||||||| |||||||| |||||||| |||||||||||||||||||||||||| |||| Sbjct: 611 tgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctt 552 Query: 249 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 551 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggagca 492 Query: 309 atgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccag 368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 491 ctgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactag 432 Query: 369 cagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattta 428 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct: 431 cagctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattta 372 Query: 429 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 488 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 371 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 312 Query: 489 atgaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||||| |||| Sbjct: 311 atgaaagaaatattgtctttccagaaagaagaacc 277 Score = 101 bits (51), Expect = 3e-18 Identities = 81/90 (90%), Gaps = 1/90 (1%) Strand = Plus / Minus Query: 560 tatatctctaatcgaataaattgacttcgtatggggcattttactggccgctatggagat 619 ||||| ||||| |||| |||||||||||||||||| |||||| ||||| |||||||| || Sbjct: 239 tatatttctaaccgaagaaattgacttcgtatggg-cattttgctggcagctatggaaat 181 Query: 620 agctgctctagctacagnttcagatactcc 649 ||||||||||||||||| ||| |||||||| Sbjct: 180 agctgctctagctacagtttcggatactcc 151
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 775 bits (391), Expect = 0.0 Identities = 439/455 (96%) Strand = Plus / Plus Query: 69 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctc 128 ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| Sbjct: 5656694 ctactagtatttataatacttcaggagctaatgaaactattgtagtaaaattcaattctc 5656753 Query: 129 tcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaa 188 ||||||||||||| |||||||||||||| |||||||||||||| || ||||||||||||| Sbjct: 5656754 tcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaa 5656813 Query: 189 ttataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctt 248 | |||||||| |||||||| |||||||| |||||||||||||||||||||||||| |||| Sbjct: 5656814 tgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctt 5656873 Query: 249 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5656874 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 5656933 Query: 309 atgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccag 368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 5656934 ctgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactag 5656993 Query: 369 cagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattta 428 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct: 5656994 cagctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattta 5657053 Query: 429 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 488 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5657054 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 5657113 Query: 489 atgaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||||| |||| Sbjct: 5657114 atgaaagaaatattgtctttccagaaagaagaacc 5657148 Score = 363 bits (183), Expect = 5e-97 Identities = 213/223 (95%) Strand = Plus / Plus Query: 69 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctc 128 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 20440427 ctactagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctc 20440486 Query: 129 tcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaa 188 ||||||||||||| |||||||||||||| |||||||||||||| || ||||||||||||| Sbjct: 20440487 tcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaa 20440546 Query: 189 ttataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctt 248 | |||||||| |||||||| |||||||| |||||||||||||||||||||||||| |||| Sbjct: 20440547 tgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctt 20440606 Query: 249 tacatgtacgtacaattacagctcgaattacttcggatctttc 291 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 20440607 tacatgtacgtacaattacagctcgaattacttcggatctttc 20440649 Score = 85.7 bits (43), Expect = 2e-13 Identities = 79/90 (87%), Gaps = 1/90 (1%) Strand = Plus / Plus Query: 560 tatatctctaatcgaataaattgacttcgtatggggcattttactggccgctatggagat 619 ||||| ||||| |||| ||||||||||||||| ||||||||| ||||| |||||||| || Sbjct: 5657187 tatatttctaaccgaagaaattgacttcgtat-gggcattttgctggcagctatggaaat 5657245 Query: 620 agctgctctagctacagnttcagatactcc 649 ||||||| |||||||| ||| |||||||| Sbjct: 5657246 agctgctatagctacaatttcggatactcc 5657275 Score = 54.0 bits (27), Expect = 6e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 105 ctattttggtaaaattcaattctctcaattc 135 ||||||| ||||||||||||||||||||||| Sbjct: 25751936 ctattttagtaaaattcaattctctcaattc 25751906
>emb|AL954853.5|CNS08CD7 Oryza sativa chromosome 12, . BAC OSJNBb0071I17 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 159056 Score = 775 bits (391), Expect = 0.0 Identities = 439/455 (96%) Strand = Plus / Plus Query: 69 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctc 128 ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| Sbjct: 11224 ctactagtatttataatacttcaggagctaatgaaactattgtagtaaaattcaattctc 11283 Query: 129 tcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaa 188 ||||||||||||| |||||||||||||| |||||||||||||| || ||||||||||||| Sbjct: 11284 tcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaa 11343 Query: 189 ttataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctt 248 | |||||||| |||||||| |||||||| |||||||||||||||||||||||||| |||| Sbjct: 11344 tgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctt 11403 Query: 249 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11404 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 11463 Query: 309 atgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccag 368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 11464 ctgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactag 11523 Query: 369 cagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattta 428 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct: 11524 cagctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattta 11583 Query: 429 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 488 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11584 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 11643 Query: 489 atgaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||||| |||| Sbjct: 11644 atgaaagaaatattgtctttccagaaagaagaacc 11678 Score = 85.7 bits (43), Expect = 2e-13 Identities = 79/90 (87%), Gaps = 1/90 (1%) Strand = Plus / Plus Query: 560 tatatctctaatcgaataaattgacttcgtatggggcattttactggccgctatggagat 619 ||||| ||||| |||| ||||||||||||||| ||||||||| ||||| |||||||| || Sbjct: 11717 tatatttctaaccgaagaaattgacttcgtat-gggcattttgctggcagctatggaaat 11775 Query: 620 agctgctctagctacagnttcagatactcc 649 ||||||| |||||||| ||| |||||||| Sbjct: 11776 agctgctatagctacaatttcggatactcc 11805
>dbj|AP006728.1| Oryza nivara chloroplast DNA, complete genome Length = 134494 Score = 775 bits (391), Expect = 0.0 Identities = 439/455 (96%) Strand = Plus / Plus Query: 69 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctc 128 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 77194 ctactagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctc 77253 Query: 129 tcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaa 188 ||||||||||||| |||||||||||||| |||||||||||||| || ||||||||||||| Sbjct: 77254 tcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaa 77313 Query: 189 ttataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctt 248 | |||||||| |||||||| |||||||| |||||||||||||||||||||||||| |||| Sbjct: 77314 tgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctt 77373 Query: 249 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77374 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 77433 Query: 309 atgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccag 368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 77434 ctgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactag 77493 Query: 369 cagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattta 428 |||||||||||||||||||||||||||||||||||||||| || || ||||||||||||| Sbjct: 77494 cagctcctatgactcgaatacacatcaattttcgagctccgctgttatctgctacattta 77553 Query: 429 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 488 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77554 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 77613 Query: 489 atgaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||||| |||| Sbjct: 77614 atgaaagaaatattgtctttccagaaagaagaacc 77648 Score = 93.7 bits (47), Expect = 7e-16 Identities = 80/90 (88%), Gaps = 1/90 (1%) Strand = Plus / Plus Query: 560 tatatctctaatcgaataaattgacttcgtatggggcattttactggccgctatggagat 619 ||||| ||||| |||| |||||||||||||||||| |||||| ||||| |||||||| || Sbjct: 77687 tatatttctaaccgaagaaattgacttcgtatggg-cattttgctggcagctatggaaat 77745 Query: 620 agctgctctagctacagnttcagatactcc 649 |||| |||||||||||| ||| |||||||| Sbjct: 77746 agctactctagctacagtttcggatactcc 77775
>ref|XM_479424.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2154 Score = 767 bits (387), Expect = 0.0 Identities = 438/455 (96%) Strand = Plus / Minus Query: 69 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctc 128 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 1472 ctactagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctc 1413 Query: 129 tcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaa 188 ||||||||||||| |||||||||||||| |||||||||||||| || ||||||||||||| Sbjct: 1412 tcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaa 1353 Query: 189 ttataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctt 248 | |||||||| |||||||| |||||||| |||||||||||||||||||||||||| |||| Sbjct: 1352 tgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctt 1293 Query: 249 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1292 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 1233 Query: 309 atgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccag 368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 1232 ctgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactag 1173 Query: 369 cagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattta 428 |||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||| Sbjct: 1172 cagctcctatgactcgaatacacatcaatttttgagctccactgttatctgctacattta 1113 Query: 429 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 488 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1112 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 1053 Query: 489 atgaaagaaatattgtctttccagaaagaaaaacc 523 ||||||||||||| |||||||||||||||| |||| Sbjct: 1052 atgaaagaaatatcgtctttccagaaagaagaacc 1018 Score = 93.7 bits (47), Expect = 7e-16 Identities = 80/90 (88%), Gaps = 1/90 (1%) Strand = Plus / Minus Query: 560 tatatctctaatcgaataaattgacttcgtatggggcattttactggccgctatggagat 619 ||||| ||||| || | |||||||||||||||||| |||||| ||||| |||||||| || Sbjct: 980 tatatttctaaccggagaaattgacttcgtatggg-cattttgctggcagctatggaaat 922 Query: 620 agctgctctagctacagnttcagatactcc 649 ||||||||||||||||| ||| |||||||| Sbjct: 921 agctgctctagctacagtttcggatactcc 892
>ref|XM_479423.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2154 Score = 767 bits (387), Expect = 0.0 Identities = 438/455 (96%) Strand = Plus / Minus Query: 69 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctc 128 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 1472 ctactagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctc 1413 Query: 129 tcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaa 188 ||||||||||||| |||||||||||||| |||||||||||||| || ||||||||||||| Sbjct: 1412 tcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaa 1353 Query: 189 ttataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctt 248 | |||||||| |||||||| |||||||| |||||||||||||||||||||||||| |||| Sbjct: 1352 tgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctt 1293 Query: 249 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1292 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 1233 Query: 309 atgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccag 368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 1232 ctgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactag 1173 Query: 369 cagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattta 428 |||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||| Sbjct: 1172 cagctcctatgactcgaatacacatcaatttttgagctccactgttatctgctacattta 1113 Query: 429 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 488 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1112 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 1053 Query: 489 atgaaagaaatattgtctttccagaaagaaaaacc 523 ||||||||||||| |||||||||||||||| |||| Sbjct: 1052 atgaaagaaatatcgtctttccagaaagaagaacc 1018 Score = 93.7 bits (47), Expect = 7e-16 Identities = 80/90 (88%), Gaps = 1/90 (1%) Strand = Plus / Minus Query: 560 tatatctctaatcgaataaattgacttcgtatggggcattttactggccgctatggagat 619 ||||| ||||| || | |||||||||||||||||| |||||| ||||| |||||||| || Sbjct: 980 tatatttctaaccggagaaattgacttcgtatggg-cattttgctggcagctatggaaat 922 Query: 620 agctgctctagctacagnttcagatactcc 649 ||||||||||||||||| ||| |||||||| Sbjct: 921 agctgctctagctacagtttcggatactcc 892
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 767 bits (387), Expect = 0.0 Identities = 438/455 (96%) Strand = Plus / Plus Query: 69 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctc 128 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 27922734 ctactagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctc 27922793 Query: 129 tcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaa 188 ||||||||||||| |||||||||||||| |||||||||||||| || ||||||||||||| Sbjct: 27922794 tcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaa 27922853 Query: 189 ttataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctt 248 | |||||||| |||||||| |||||||| |||||||||||||||||||||||||| |||| Sbjct: 27922854 tgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctt 27922913 Query: 249 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 27922914 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 27922973 Query: 309 atgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccag 368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 27922974 ctgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactag 27923033 Query: 369 cagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattta 428 |||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||| Sbjct: 27923034 cagctcctatgactcgaatacacatcaatttttgagctccactgttatctgctacattta 27923093 Query: 429 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 488 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 27923094 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 27923153 Query: 489 atgaaagaaatattgtctttccagaaagaaaaacc 523 ||||||||||||| |||||||||||||||| |||| Sbjct: 27923154 atgaaagaaatatcgtctttccagaaagaagaacc 27923188 Score = 141 bits (71), Expect = 3e-30 Identities = 126/143 (88%), Gaps = 1/143 (0%) Strand = Plus / Minus Query: 101 gaaactattttggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcga 160 ||||||||||| |||||||||||||||||||||| |||| | |||||||||||||| | | Sbjct: 4509148 gaaactattttagtaaaattcaattctctcaattactcgacgatcgcgccaaaaacgcaa 4509089 Query: 161 gttccttttgggttgcctttttgatcaattataaccgcagcattgtcatcatagcggatt 220 ||||| ||||| || ||||||| | ||| ||| ||| ||||||||||||||||| ||| Sbjct: 4509088 gttccatttggatttccttttt-actaatgatatccgttgcattgtcatcatagcgtatt 4509030 Query: 221 attataccgtcttcgcatttgaa 243 ||||||||||||||||||||||| Sbjct: 4509029 attataccgtcttcgcatttgaa 4509007 Score = 93.7 bits (47), Expect = 7e-16 Identities = 80/90 (88%), Gaps = 1/90 (1%) Strand = Plus / Plus Query: 560 tatatctctaatcgaataaattgacttcgtatggggcattttactggccgctatggagat 619 ||||| ||||| || | |||||||||||||||||| |||||| ||||| |||||||| || Sbjct: 27923226 tatatttctaaccggagaaattgacttcgtatggg-cattttgctggcagctatggaaat 27923284 Query: 620 agctgctctagctacagnttcagatactcc 649 ||||||||||||||||| ||| |||||||| Sbjct: 27923285 agctgctctagctacagtttcggatactcc 27923314
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 767 bits (387), Expect = 0.0 Identities = 438/455 (96%) Strand = Plus / Minus Query: 69 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctc 128 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 23181851 ctactagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctc 23181792 Query: 129 tcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaa 188 ||||||||||||| |||| ||||||||| ||||||||||||| || ||||||||||||| Sbjct: 23181791 tcaattcctcggcgatcgtgccaaaaacgtgagttccttttggatttcctttttgatcaa 23181732 Query: 189 ttataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctt 248 | |||||||| |||||||| |||||||| |||||||||||||||||||||||||| |||| Sbjct: 23181731 tgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctt 23181672 Query: 249 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 23181671 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 23181612 Query: 309 atgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccag 368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 23181611 ctgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactag 23181552 Query: 369 cagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattta 428 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct: 23181551 cagctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattta 23181492 Query: 429 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 488 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 23181491 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 23181432 Query: 489 atgaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||||| |||| Sbjct: 23181431 atgaaagaaatattgtctttccagaaagaagaacc 23181397 Score = 101 bits (51), Expect = 3e-18 Identities = 81/90 (90%), Gaps = 1/90 (1%) Strand = Plus / Minus Query: 560 tatatctctaatcgaataaattgacttcgtatggggcattttactggccgctatggagat 619 ||||| ||||| |||| |||||||||||||||||| |||||| ||||| |||||||| || Sbjct: 23181359 tatatttctaaccgaagaaattgacttcgtatggg-cattttgctggcagctatggaaat 23181301 Query: 620 agctgctctagctacagnttcagatactcc 649 ||||||||||||||||| ||| |||||||| Sbjct: 23181300 agctgctctagctacagtttcggatactcc 23181271
>dbj|AP005452.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0453E03 Length = 159980 Score = 767 bits (387), Expect = 0.0 Identities = 438/455 (96%) Strand = Plus / Plus Query: 69 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctc 128 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 86092 ctactagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctc 86151 Query: 129 tcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaa 188 ||||||||||||| |||||||||||||| |||||||||||||| || ||||||||||||| Sbjct: 86152 tcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaa 86211 Query: 189 ttataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctt 248 | |||||||| |||||||| |||||||| |||||||||||||||||||||||||| |||| Sbjct: 86212 tgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctt 86271 Query: 249 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 86272 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 86331 Query: 309 atgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccag 368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 86332 ctgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactag 86391 Query: 369 cagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattta 428 |||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||| Sbjct: 86392 cagctcctatgactcgaatacacatcaatttttgagctccactgttatctgctacattta 86451 Query: 429 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 488 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 86452 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 86511 Query: 489 atgaaagaaatattgtctttccagaaagaaaaacc 523 ||||||||||||| |||||||||||||||| |||| Sbjct: 86512 atgaaagaaatatcgtctttccagaaagaagaacc 86546 Score = 93.7 bits (47), Expect = 7e-16 Identities = 80/90 (88%), Gaps = 1/90 (1%) Strand = Plus / Plus Query: 560 tatatctctaatcgaataaattgacttcgtatggggcattttactggccgctatggagat 619 ||||| ||||| || | |||||||||||||||||| |||||| ||||| |||||||| || Sbjct: 86584 tatatttctaaccggagaaattgacttcgtatggg-cattttgctggcagctatggaaat 86642 Query: 620 agctgctctagctacagnttcagatactcc 649 ||||||||||||||||| ||| |||||||| Sbjct: 86643 agctgctctagctacagtttcggatactcc 86672
>dbj|AP003825.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1343_D04 Length = 143407 Score = 767 bits (387), Expect = 0.0 Identities = 438/455 (96%) Strand = Plus / Plus Query: 69 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctc 128 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 12068 ctactagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctc 12127 Query: 129 tcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaa 188 ||||||||||||| |||||||||||||| |||||||||||||| || ||||||||||||| Sbjct: 12128 tcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaa 12187 Query: 189 ttataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctt 248 | |||||||| |||||||| |||||||| |||||||||||||||||||||||||| |||| Sbjct: 12188 tgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctt 12247 Query: 249 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12248 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 12307 Query: 309 atgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccag 368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 12308 ctgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactag 12367 Query: 369 cagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattta 428 |||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||| Sbjct: 12368 cagctcctatgactcgaatacacatcaatttttgagctccactgttatctgctacattta 12427 Query: 429 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 488 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12428 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 12487 Query: 489 atgaaagaaatattgtctttccagaaagaaaaacc 523 ||||||||||||| |||||||||||||||| |||| Sbjct: 12488 atgaaagaaatatcgtctttccagaaagaagaacc 12522 Score = 93.7 bits (47), Expect = 7e-16 Identities = 80/90 (88%), Gaps = 1/90 (1%) Strand = Plus / Plus Query: 560 tatatctctaatcgaataaattgacttcgtatggggcattttactggccgctatggagat 619 ||||| ||||| || | |||||||||||||||||| |||||| ||||| |||||||| || Sbjct: 12560 tatatttctaaccggagaaattgacttcgtatggg-cattttgctggcagctatggaaat 12618 Query: 620 agctgctctagctacagnttcagatactcc 649 ||||||||||||||||| ||| |||||||| Sbjct: 12619 agctgctctagctacagtttcggatactcc 12648
>dbj|AP004236.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0417D05 Length = 165752 Score = 767 bits (387), Expect = 0.0 Identities = 438/455 (96%) Strand = Plus / Minus Query: 69 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctc 128 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 132499 ctactagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctc 132440 Query: 129 tcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaa 188 ||||||||||||| |||| ||||||||| ||||||||||||| || ||||||||||||| Sbjct: 132439 tcaattcctcggcgatcgtgccaaaaacgtgagttccttttggatttcctttttgatcaa 132380 Query: 189 ttataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctt 248 | |||||||| |||||||| |||||||| |||||||||||||||||||||||||| |||| Sbjct: 132379 tgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctt 132320 Query: 249 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 132319 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 132260 Query: 309 atgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccag 368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 132259 ctgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactag 132200 Query: 369 cagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattta 428 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct: 132199 cagctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattta 132140 Query: 429 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 488 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 132139 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 132080 Query: 489 atgaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||||| |||| Sbjct: 132079 atgaaagaaatattgtctttccagaaagaagaacc 132045 Score = 101 bits (51), Expect = 3e-18 Identities = 81/90 (90%), Gaps = 1/90 (1%) Strand = Plus / Minus Query: 560 tatatctctaatcgaataaattgacttcgtatggggcattttactggccgctatggagat 619 ||||| ||||| |||| |||||||||||||||||| |||||| ||||| |||||||| || Sbjct: 132007 tatatttctaaccgaagaaattgacttcgtatggg-cattttgctggcagctatggaaat 131949 Query: 620 agctgctctagctacagnttcagatactcc 649 ||||||||||||||||| ||| |||||||| Sbjct: 131948 agctgctctagctacagtttcggatactcc 131919
>dbj|AP003623.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0642B07 Length = 139297 Score = 767 bits (387), Expect = 0.0 Identities = 438/455 (96%) Strand = Plus / Minus Query: 69 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctc 128 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 16613 ctactagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctc 16554 Query: 129 tcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaa 188 ||||||||||||| |||| ||||||||| ||||||||||||| || ||||||||||||| Sbjct: 16553 tcaattcctcggcgatcgtgccaaaaacgtgagttccttttggatttcctttttgatcaa 16494 Query: 189 ttataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctt 248 | |||||||| |||||||| |||||||| |||||||||||||||||||||||||| |||| Sbjct: 16493 tgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctt 16434 Query: 249 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 16433 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 16374 Query: 309 atgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccag 368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 16373 ctgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactag 16314 Query: 369 cagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattta 428 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct: 16313 cagctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattta 16254 Query: 429 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 488 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 16253 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 16194 Query: 489 atgaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||||| |||| Sbjct: 16193 atgaaagaaatattgtctttccagaaagaagaacc 16159 Score = 101 bits (51), Expect = 3e-18 Identities = 81/90 (90%), Gaps = 1/90 (1%) Strand = Plus / Minus Query: 560 tatatctctaatcgaataaattgacttcgtatggggcattttactggccgctatggagat 619 ||||| ||||| |||| |||||||||||||||||| |||||| ||||| |||||||| || Sbjct: 16121 tatatttctaaccgaagaaattgacttcgtatggg-cattttgctggcagctatggaaat 16063 Query: 620 agctgctctagctacagnttcagatactcc 649 ||||||||||||||||| ||| |||||||| Sbjct: 16062 agctgctctagctacagtttcggatactcc 16033
>ref|XM_450630.1| Oryza sativa (japonica cultivar-group), mRNA Length = 793 Score = 743 bits (375), Expect = 0.0 Identities = 435/455 (95%) Strand = Plus / Minus Query: 69 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctc 128 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 732 ctactagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctc 673 Query: 129 tcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaa 188 ||||||||||||| |||||||||||||| |||||||||||||| || ||||||||||||| Sbjct: 672 tcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaa 613 Query: 189 ttataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctt 248 | |||||||| |||||||| |||||||| |||||||||||||||||||||||||| |||| Sbjct: 612 tgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctt 553 Query: 249 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 552 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 493 Query: 309 atgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccag 368 | |||||||||||||||||||||||||||||||||||||||||||||||||| ||| || Sbjct: 492 ctacgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgactactag 433 Query: 369 cagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattta 428 ||||||||||||||||||||||||| ||||||||||||||| | || ||||||||||||| Sbjct: 432 cagctcctatgactcgaatacacattaattttcgagctccagtgttatctgctacattta 373 Query: 429 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 488 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 372 aaagggtctgaggttgaatcatattattttgatttcaatttattatttcaatgcaaaagg 313 Query: 489 atgaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||||| |||| Sbjct: 312 atgaaagaaatattgtctttccagaaagaagaacc 278 Score = 95.6 bits (48), Expect = 2e-16 Identities = 88/99 (88%), Gaps = 2/99 (2%) Strand = Plus / Minus Query: 560 tatatctctaatcgaataaattgacttcgtatggggcattttactggccgctatggagat 619 ||||| ||||| |||| |||||||||||||||||| |||||| || || |||||||| || Sbjct: 239 tatatttctaaccgaagaaattgacttcgtatggg-cattttgctagcagctatggaaat 181 Query: 620 agctgctctagctacagnttcagatactcc-cccatttt 657 ||||||||||||||||| ||| |||||||| |||||||| Sbjct: 180 agctgctctagctacagtttcggatactccgcccatttt 142
>ref|XM_450631.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2141 Score = 743 bits (375), Expect = 0.0 Identities = 435/455 (95%) Strand = Plus / Minus Query: 69 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctc 128 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 1460 ctactagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctc 1401 Query: 129 tcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaa 188 ||||||||||||| |||||||||||||| |||||||||||||| || ||||||||||||| Sbjct: 1400 tcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaa 1341 Query: 189 ttataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctt 248 | |||||||| |||||||| |||||||| |||||||||||||||||||||||||| |||| Sbjct: 1340 tgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctt 1281 Query: 249 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1280 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 1221 Query: 309 atgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccag 368 | |||||||||||||||||||||||||||||||||||||||||||||||||| ||| || Sbjct: 1220 ctacgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgactactag 1161 Query: 369 cagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattta 428 ||||||||||||||||||||||||| ||||||||||||||| | || ||||||||||||| Sbjct: 1160 cagctcctatgactcgaatacacattaattttcgagctccagtgttatctgctacattta 1101 Query: 429 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 488 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 1100 aaagggtctgaggttgaatcatattattttgatttcaatttattatttcaatgcaaaagg 1041 Query: 489 atgaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||||| |||| Sbjct: 1040 atgaaagaaatattgtctttccagaaagaagaacc 1006 Score = 95.6 bits (48), Expect = 2e-16 Identities = 88/99 (88%), Gaps = 2/99 (2%) Strand = Plus / Minus Query: 560 tatatctctaatcgaataaattgacttcgtatggggcattttactggccgctatggagat 619 ||||| ||||| |||| |||||||||||||||||| |||||| || || |||||||| || Sbjct: 967 tatatttctaaccgaagaaattgacttcgtatggg-cattttgctagcagctatggaaat 909 Query: 620 agctgctctagctacagnttcagatactcc-cccatttt 657 ||||||||||||||||| ||| |||||||| |||||||| Sbjct: 908 agctgctctagctacagtttcggatactccgcccatttt 870
>ref|XM_506652.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1001_G09.24 mRNA Length = 1742 Score = 743 bits (375), Expect = 0.0 Identities = 435/455 (95%) Strand = Plus / Minus Query: 69 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctc 128 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 1675 ctactagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctc 1616 Query: 129 tcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaa 188 ||||||||||||| |||||||||||||| |||||||||||||| || ||||||||||||| Sbjct: 1615 tcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaa 1556 Query: 189 ttataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctt 248 | |||||||| |||||||| |||||||| |||||||||||||||||||||||||| |||| Sbjct: 1555 tgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctt 1496 Query: 249 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1495 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 1436 Query: 309 atgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccag 368 | |||||||||||||||||||||||||||||||||||||||||||||||||| ||| || Sbjct: 1435 ctacgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgactactag 1376 Query: 369 cagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattta 428 ||||||||||||||||||||||||| ||||||||||||||| | || ||||||||||||| Sbjct: 1375 cagctcctatgactcgaatacacattaattttcgagctccagtgttatctgctacattta 1316 Query: 429 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 488 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 1315 aaagggtctgaggttgaatcatattattttgatttcaatttattatttcaatgcaaaagg 1256 Query: 489 atgaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||||| |||| Sbjct: 1255 atgaaagaaatattgtctttccagaaagaagaacc 1221 Score = 95.6 bits (48), Expect = 2e-16 Identities = 88/99 (88%), Gaps = 2/99 (2%) Strand = Plus / Minus Query: 560 tatatctctaatcgaataaattgacttcgtatggggcattttactggccgctatggagat 619 ||||| ||||| |||| |||||||||||||||||| |||||| || || |||||||| || Sbjct: 1182 tatatttctaaccgaagaaattgacttcgtatggg-cattttgctagcagctatggaaat 1124 Query: 620 agctgctctagctacagnttcagatactcc-cccatttt 657 ||||||||||||||||| ||| |||||||| |||||||| Sbjct: 1123 agctgctctagctacagtttcggatactccgcccatttt 1085
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 743 bits (375), Expect = 0.0 Identities = 435/455 (95%) Strand = Plus / Minus Query: 69 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctc 128 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 11896632 ctactagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctc 11896573 Query: 129 tcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaa 188 ||||||||||||| |||||||||||||| |||||||||||||| || ||||||||||||| Sbjct: 11896572 tcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaa 11896513 Query: 189 ttataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctt 248 | |||||||| |||||||| |||||||| |||||||||||||||||||||||||| |||| Sbjct: 11896512 tgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctt 11896453 Query: 249 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11896452 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 11896393 Query: 309 atgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccag 368 | |||||||||||||||||||||||||||||||||||||||||||||||||| ||| || Sbjct: 11896392 ctacgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgactactag 11896333 Query: 369 cagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattta 428 ||||||||||||||||||||||||| ||||||||||||||| | || ||||||||||||| Sbjct: 11896332 cagctcctatgactcgaatacacattaattttcgagctccagtgttatctgctacattta 11896273 Query: 429 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 488 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 11896272 aaagggtctgaggttgaatcatattattttgatttcaatttattatttcaatgcaaaagg 11896213 Query: 489 atgaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||||| |||| Sbjct: 11896212 atgaaagaaatattgtctttccagaaagaagaacc 11896178 Score = 186 bits (94), Expect = 6e-44 Identities = 146/162 (90%), Gaps = 1/162 (0%) Strand = Plus / Plus Query: 82 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 141 |||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||| ||| Sbjct: 20862633 taatacttcatgagcttatgaaactattttagtaaaattcaattctctcaattccttggc 20862692 Query: 142 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 201 || ||||||||||| | |||||| ||||| || ||||||| |||||| ||||||||||| Sbjct: 20862693 gattgcgccaaaaacgcaagttccatttggattcccttttt-atcaatgataaccgcagc 20862751 Query: 202 attgtcatcatagcggattattataccgtcttcgcatttgaa 243 ||||| |||||||| |||||||||||||||||||||||||| Sbjct: 20862752 attgttgtcatagcgtattattataccgtcttcgcatttgaa 20862793 Score = 153 bits (77), Expect = 9e-34 Identities = 80/81 (98%) Strand = Plus / Minus Query: 443 tgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatatt 502 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 14456068 tgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatatt 14456009 Query: 503 gtctttccagaaagaaaaacc 523 |||||||||||||||| |||| Sbjct: 14456008 gtctttccagaaagaagaacc 14455988 Score = 101 bits (51), Expect = 3e-18 Identities = 81/90 (90%), Gaps = 1/90 (1%) Strand = Plus / Minus Query: 560 tatatctctaatcgaataaattgacttcgtatggggcattttactggccgctatggagat 619 ||||| ||||| |||| |||||||||||||||||| |||||| ||||| |||||||| || Sbjct: 14455950 tatatttctaaccgaagaaattgacttcgtatggg-cattttgctggcagctatggaaat 14455892 Query: 620 agctgctctagctacagnttcagatactcc 649 ||||||||||||||||| ||| |||||||| Sbjct: 14455891 agctgctctagctacagtttcggatactcc 14455862 Score = 95.6 bits (48), Expect = 2e-16 Identities = 88/99 (88%), Gaps = 2/99 (2%) Strand = Plus / Minus Query: 560 tatatctctaatcgaataaattgacttcgtatggggcattttactggccgctatggagat 619 ||||| ||||| |||| |||||||||||||||||| |||||| || || |||||||| || Sbjct: 11896139 tatatttctaaccgaagaaattgacttcgtatggg-cattttgctagcagctatggaaat 11896081 Query: 620 agctgctctagctacagnttcagatactcc-cccatttt 657 ||||||||||||||||| ||| |||||||| |||||||| Sbjct: 11896080 agctgctctagctacagtttcggatactccgcccatttt 11896042
>dbj|AP005675.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1001_G09 Length = 118018 Score = 743 bits (375), Expect = 0.0 Identities = 435/455 (95%) Strand = Plus / Minus Query: 69 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctc 128 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 78122 ctactagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctc 78063 Query: 129 tcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaa 188 ||||||||||||| |||||||||||||| |||||||||||||| || ||||||||||||| Sbjct: 78062 tcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaa 78003 Query: 189 ttataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctt 248 | |||||||| |||||||| |||||||| |||||||||||||||||||||||||| |||| Sbjct: 78002 tgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctt 77943 Query: 249 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77942 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 77883 Query: 309 atgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccag 368 | |||||||||||||||||||||||||||||||||||||||||||||||||| ||| || Sbjct: 77882 ctacgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgactactag 77823 Query: 369 cagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattta 428 ||||||||||||||||||||||||| ||||||||||||||| | || ||||||||||||| Sbjct: 77822 cagctcctatgactcgaatacacattaattttcgagctccagtgttatctgctacattta 77763 Query: 429 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 488 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 77762 aaagggtctgaggttgaatcatattattttgatttcaatttattatttcaatgcaaaagg 77703 Query: 489 atgaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||||| |||| Sbjct: 77702 atgaaagaaatattgtctttccagaaagaagaacc 77668 Score = 95.6 bits (48), Expect = 2e-16 Identities = 88/99 (88%), Gaps = 2/99 (2%) Strand = Plus / Minus Query: 560 tatatctctaatcgaataaattgacttcgtatggggcattttactggccgctatggagat 619 ||||| ||||| |||| |||||||||||||||||| |||||| || || |||||||| || Sbjct: 77629 tatatttctaaccgaagaaattgacttcgtatggg-cattttgctagcagctatggaaat 77571 Query: 620 agctgctctagctacagnttcagatactcc-cccatttt 657 ||||||||||||||||| ||| |||||||| |||||||| Sbjct: 77570 agctgctctagctacagtttcggatactccgcccatttt 77532
>dbj|AP005422.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0441A12 Length = 185437 Score = 743 bits (375), Expect = 0.0 Identities = 435/455 (95%) Strand = Plus / Minus Query: 69 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctc 128 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 1112 ctactagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctc 1053 Query: 129 tcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaa 188 ||||||||||||| |||||||||||||| |||||||||||||| || ||||||||||||| Sbjct: 1052 tcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaa 993 Query: 189 ttataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctt 248 | |||||||| |||||||| |||||||| |||||||||||||||||||||||||| |||| Sbjct: 992 tgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctt 933 Query: 249 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 932 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 873 Query: 309 atgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccag 368 | |||||||||||||||||||||||||||||||||||||||||||||||||| ||| || Sbjct: 872 ctacgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgactactag 813 Query: 369 cagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattta 428 ||||||||||||||||||||||||| ||||||||||||||| | || ||||||||||||| Sbjct: 812 cagctcctatgactcgaatacacattaattttcgagctccagtgttatctgctacattta 753 Query: 429 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 488 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 752 aaagggtctgaggttgaatcatattattttgatttcaatttattatttcaatgcaaaagg 693 Query: 489 atgaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||||| |||| Sbjct: 692 atgaaagaaatattgtctttccagaaagaagaacc 658 Score = 95.6 bits (48), Expect = 2e-16 Identities = 88/99 (88%), Gaps = 2/99 (2%) Strand = Plus / Minus Query: 560 tatatctctaatcgaataaattgacttcgtatggggcattttactggccgctatggagat 619 ||||| ||||| |||| |||||||||||||||||| |||||| || || |||||||| || Sbjct: 619 tatatttctaaccgaagaaattgacttcgtatggg-cattttgctagcagctatggaaat 561 Query: 620 agctgctctagctacagnttcagatactcc-cccatttt 657 ||||||||||||||||| ||| |||||||| |||||||| Sbjct: 560 agctgctctagctacagtttcggatactccgcccatttt 522
>emb|X86563.2|ZMA86563 Zea mays complete chloroplast genome Length = 140384 Score = 737 bits (372), Expect = 0.0 Identities = 451/476 (94%), Gaps = 1/476 (0%) Strand = Plus / Plus Query: 48 ttctttgatnctaaatttcgcctactagtatttataatacttcaggagctaatgaaacta 107 ||||||||| ||| || ||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 79008 ttctttgat-ctatatctcgtctactagtatttataatacttcaggagctaatgaaacta 79066 Query: 108 ttttggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcgagttcctt 167 |||| || |||||||||||||| ||||| ||||||| ||||||||||||||||||||||| Sbjct: 79067 ttttagtcaaattcaattctcttaattcttcggcaaccgcgccaaaaactcgagttcctt 79126 Query: 168 ttgggttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattatac 227 |||| || |||||||||||||| ||||| || ||||||||||||||||| |||||||||| Sbjct: 79127 ttggatttcctttttgatcaatgataactgctgcattgtcatcatagcgtattattatac 79186 Query: 228 cgtcttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggatc 287 |||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 79187 cgtcgtcgcctttgaattctttacgtgtacgtacaattacagctcgaattacttcggatc 79246 Query: 288 tttctagaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatac 347 ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct: 79247 tttctagaggcatttggggcactgcgtctttgattacagcaataataacatcaccaatac 79306 Query: 348 gagcatatcgctgattaccagcagctcctatgactcgaatacacatcaattttcgagctc 407 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 79307 gagcatatcgctgattaccagcggctcctatgactcgaatacacatcaattttcgagctc 79366 Query: 408 cactattgtctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaat 467 |||| || |||||||||||||||||||||||||||||||||||||||||| |||||| || Sbjct: 79367 cactgttatctgctacatttaaaagggtctgaggttgaatcatattatttggatttccat 79426 Query: 468 ttgttatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 79427 ttgttatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaacc 79482 Score = 139 bits (70), Expect = 1e-29 Identities = 94/101 (93%), Gaps = 1/101 (0%) Strand = Plus / Plus Query: 549 ttttagggttctatatctctaatcgaataaattgacttcgtatggggcattttactggcc 608 |||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||| Sbjct: 79509 ttttggggttctatatctctaatcgaagaaattgacttcgtatggg-cattttactggca 79567 Query: 609 gctatggagatagctgctctagctacagnttcagatactcc 649 ||||| |||||||||||||||||||||| ||| |||||||| Sbjct: 79568 gctatagagatagctgctctagctacagtttcggatactcc 79608
>emb|X06734.1|CHZMRP14 Maize chloroplast genes for ribosomal proteins L14, S8 and L16 partial Length = 1287 Score = 737 bits (372), Expect = 0.0 Identities = 451/476 (94%), Gaps = 1/476 (0%) Strand = Plus / Minus Query: 48 ttctttgatnctaaatttcgcctactagtatttataatacttcaggagctaatgaaacta 107 ||||||||| ||| || ||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 661 ttctttgat-ctatatctcgtctactagtatttataatacttcaggagctaatgaaacta 603 Query: 108 ttttggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcgagttcctt 167 |||| || |||||||||||||| ||||| ||||||| ||||||||||||||||||||||| Sbjct: 602 ttttagtcaaattcaattctcttaattcttcggcaaccgcgccaaaaactcgagttcctt 543 Query: 168 ttgggttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattatac 227 |||| || |||||||||||||| ||||| || ||||||||||||||||| |||||||||| Sbjct: 542 ttggatttcctttttgatcaatgataactgctgcattgtcatcatagcgtattattatac 483 Query: 228 cgtcttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggatc 287 |||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 482 cgtcgtcgcctttgaattctttacgtgtacgtacaattacagctcgaattacttcggatc 423 Query: 288 tttctagaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatac 347 ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct: 422 tttctagaggcatttggggcactgcgtctttgattacagcaataataacatcaccaatac 363 Query: 348 gagcatatcgctgattaccagcagctcctatgactcgaatacacatcaattttcgagctc 407 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 362 gagcatatcgctgattaccagcggctcctatgactcgaatacacatcaattttcgagctc 303 Query: 408 cactattgtctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaat 467 |||| || |||||||||||||||||||||||||||||||||||||||||| |||||| || Sbjct: 302 cactgttatctgctacatttaaaagggtctgaggttgaatcatattatttggatttccat 243 Query: 468 ttgttatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 242 ttgttatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaacc 187 Score = 139 bits (70), Expect = 1e-29 Identities = 94/101 (93%), Gaps = 1/101 (0%) Strand = Plus / Minus Query: 549 ttttagggttctatatctctaatcgaataaattgacttcgtatggggcattttactggcc 608 |||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||| Sbjct: 160 ttttggggttctatatctctaatcgaagaaattgacttcgtatggg-cattttactggca 102 Query: 609 gctatggagatagctgctctagctacagnttcagatactcc 649 ||||| |||||||||||||||||||||| ||| |||||||| Sbjct: 101 gctatagagatagctgctctagctacagtttcggatactcc 61
>gb|AY928077.1| Zea mays cultivar B73 chloroplast, complete genome Length = 140454 Score = 737 bits (372), Expect = 0.0 Identities = 451/476 (94%), Gaps = 1/476 (0%) Strand = Plus / Plus Query: 48 ttctttgatnctaaatttcgcctactagtatttataatacttcaggagctaatgaaacta 107 ||||||||| ||| || ||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 79024 ttctttgat-ctatatctcgtctactagtatttataatacttcaggagctaatgaaacta 79082 Query: 108 ttttggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcgagttcctt 167 |||| || |||||||||||||| ||||| ||||||| ||||||||||||||||||||||| Sbjct: 79083 ttttagtcaaattcaattctcttaattcttcggcaaccgcgccaaaaactcgagttcctt 79142 Query: 168 ttgggttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattatac 227 |||| || |||||||||||||| ||||| || ||||||||||||||||| |||||||||| Sbjct: 79143 ttggatttcctttttgatcaatgataactgctgcattgtcatcatagcgtattattatac 79202 Query: 228 cgtcttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggatc 287 |||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 79203 cgtcgtcgcctttgaattctttacgtgtacgtacaattacagctcgaattacttcggatc 79262 Query: 288 tttctagaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatac 347 ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct: 79263 tttctagaggcatttggggcactgcgtctttgattacagcaataataacatcaccaatac 79322 Query: 348 gagcatatcgctgattaccagcagctcctatgactcgaatacacatcaattttcgagctc 407 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 79323 gagcatatcgctgattaccagcggctcctatgactcgaatacacatcaattttcgagctc 79382 Query: 408 cactattgtctgctacatttaaaagggtctgaggttgaatcatattattttgatttcaat 467 |||| || |||||||||||||||||||||||||||||||||||||||||| |||||| || Sbjct: 79383 cactgttatctgctacatttaaaagggtctgaggttgaatcatattatttggatttccat 79442 Query: 468 ttgttatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 79443 ttgttatttcaatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaacc 79498 Score = 139 bits (70), Expect = 1e-29 Identities = 94/101 (93%), Gaps = 1/101 (0%) Strand = Plus / Plus Query: 549 ttttagggttctatatctctaatcgaataaattgacttcgtatggggcattttactggcc 608 |||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||| Sbjct: 79525 ttttggggttctatatctctaatcgaagaaattgacttcgtatggg-cattttactggca 79583 Query: 609 gctatggagatagctgctctagctacagnttcagatactcc 649 ||||| |||||||||||||||||||||| ||| |||||||| Sbjct: 79584 gctatagagatagctgctctagctacagtttcggatactcc 79624
>gb|AC120991.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0006J12, complete sequence Length = 157069 Score = 735 bits (371), Expect = 0.0 Identities = 434/455 (95%) Strand = Plus / Minus Query: 69 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctc 128 ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| Sbjct: 146490 ctactagtatttataatacttcaggagctaatgaaactagtttagtaaaattcaattctc 146431 Query: 129 tcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaa 188 ||||||||||| | |||| ||||||||| |||||||||||||| || ||||||||||||| Sbjct: 146430 tcaattcctcgacgatcgtgccaaaaacgcgagttccttttggatttcctttttgatcaa 146371 Query: 189 ttataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctt 248 | |||||||| |||||||| |||||||| |||||||||||||||||||||||||| |||| Sbjct: 146370 tgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctt 146311 Query: 249 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 308 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 146310 tacatgtacgtacaattacagctcgaattacttgagatctttctagaggcatttggggca 146251 Query: 309 atgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccag 368 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || Sbjct: 146250 ctgcgtctttgattacagcaacaataacatcaccaatacgagcatattgctgattactag 146191 Query: 369 cagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattta 428 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct: 146190 cagctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattta 146131 Query: 429 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 488 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 146130 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 146071 Query: 489 atgaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||||| |||| Sbjct: 146070 atgaaagaaatattgtctttccagaaagaagaacc 146036 Score = 91.7 bits (46), Expect = 3e-15 Identities = 79/89 (88%), Gaps = 1/89 (1%) Strand = Plus / Minus Query: 560 tatatctctaatcgaataaattgacttcgtatggggcattttactggccgctatggagat 619 ||||| ||||| |||| |||||||||||||||||| |||||| ||||| |||||||| || Sbjct: 145997 tatatttctaaccgaagaaattgacttcgtatggg-cattttgctggcagctatggaaat 145939 Query: 620 agctgctctagctacagnttcagatactc 648 |||||||||||||| || ||| ||||||| Sbjct: 145938 agctgctctagctatagtttcggatactc 145910
>gb|AC104708.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1174_H11, complete sequence Length = 102567 Score = 735 bits (371), Expect = 0.0 Identities = 434/455 (95%) Strand = Plus / Minus Query: 69 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctc 128 ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| Sbjct: 5677 ctactagtatttataatacttcaggagctaatgaaactagtttagtaaaattcaattctc 5618 Query: 129 tcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaa 188 ||||||||||| | |||| ||||||||| |||||||||||||| || ||||||||||||| Sbjct: 5617 tcaattcctcgacgatcgtgccaaaaacgcgagttccttttggatttcctttttgatcaa 5558 Query: 189 ttataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctt 248 | |||||||| |||||||| |||||||| |||||||||||||||||||||||||| |||| Sbjct: 5557 tgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctt 5498 Query: 249 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 308 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 5497 tacatgtacgtacaattacagctcgaattacttgagatctttctagaggcatttggggca 5438 Query: 309 atgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccag 368 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || Sbjct: 5437 ctgcgtctttgattacagcaacaataacatcaccaatacgagcatattgctgattactag 5378 Query: 369 cagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattta 428 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct: 5377 cagctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacattta 5318 Query: 429 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 488 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5317 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 5258 Query: 489 atgaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||||| |||| Sbjct: 5257 atgaaagaaatattgtctttccagaaagaagaacc 5223 Score = 91.7 bits (46), Expect = 3e-15 Identities = 79/89 (88%), Gaps = 1/89 (1%) Strand = Plus / Minus Query: 560 tatatctctaatcgaataaattgacttcgtatggggcattttactggccgctatggagat 619 ||||| ||||| |||| |||||||||||||||||| |||||| ||||| |||||||| || Sbjct: 5184 tatatttctaaccgaagaaattgacttcgtatggg-cattttgctggcagctatggaaat 5126 Query: 620 agctgctctagctacagnttcagatactc 648 |||||||||||||| || ||| ||||||| Sbjct: 5125 agctgctctagctatagtttcggatactc 5097
>ref|NM_190859.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 372 Score = 618 bits (312), Expect = e-174 Identities = 357/372 (95%) Strand = Plus / Minus Query: 79 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 138 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 372 ttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcctc 313 Query: 139 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 198 ||| |||||||||||||| |||||||||||||| || |||||||||||||| |||||||| Sbjct: 312 ggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccgc 253 Query: 199 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 258 |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct: 252 tgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtacg 193 Query: 259 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 318 |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct: 192 tacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcatcttt 133 Query: 319 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 378 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 132 gattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctcctat 73 Query: 379 gactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctg 438 ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct: 72 gactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtctg 13 Query: 439 aggttgaatcat 450 |||||||||||| Sbjct: 12 aggttgaatcat 1
>gb|AC145383.3| Oryza sativa chromosome 3 BAC OSJNBa0038E17 genomic sequence, complete sequence Length = 141691 Score = 539 bits (272), Expect = e-150 Identities = 296/304 (97%) Strand = Plus / Plus Query: 212 tagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattacagct 271 ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 14317 tagcgtattattataccgtcttcgcatttgaactctttacatgtacgtacaattacagct 14376 Query: 272 cgaattacttcggatctttctagaggcatttggggcaatgcgtctttgattacagcaaca 331 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 14377 cgaattacttcggatctttctagaggcatttggggcactgcgtctttgattacagcaaca 14436 Query: 332 ataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcgaatacac 391 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct: 14437 ataacatcaccaatacgagcatatcgctgattactagcagctcttatgactcgaatacac 14496 Query: 392 atcaattttcgagctccactattgtctgctacatttaaaagggtctgaggttgaatcata 451 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct: 14497 atcaattttcgagctccactgttatctgctacatttaaaagggtctgaggttgaatcata 14556 Query: 452 ttattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtctttcca 511 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 14557 ttattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtttttcca 14616 Query: 512 gaaa 515 |||| Sbjct: 14617 gaaa 14620 Score = 200 bits (101), Expect = 4e-48 Identities = 135/145 (93%), Gaps = 1/145 (0%) Strand = Plus / Plus Query: 69 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctc 128 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 13995 ctactagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctc 14054 Query: 129 tcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaa 188 ||||||||| ||| |||||||||||||| |||||||||||||| || ||||||| ||||| Sbjct: 14055 tcaattcctaggcgatcgcgccaaaaacgcgagttccttttggatttccttttt-atcaa 14113 Query: 189 ttataaccgcagcattgtcatcata 213 | |||||||| |||||||| ||||| Sbjct: 14114 tgataaccgctgcattgtcgtcata 14138 Score = 93.7 bits (47), Expect = 7e-16 Identities = 80/90 (88%), Gaps = 1/90 (1%) Strand = Plus / Plus Query: 560 tatatctctaatcgaataaattgacttcgtatggggcattttactggccgctatggagat 619 ||||| ||||| |||| ||||||||||| |||||| |||||| ||||| |||||||| || Sbjct: 14667 tatatttctaaccgaagaaattgacttcatatggg-cattttgctggcagctatggaaat 14725 Query: 620 agctgctctagctacagnttcagatactcc 649 ||||||||||||||||| ||| |||||||| Sbjct: 14726 agctgctctagctacagtttcggatactcc 14755
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 539 bits (272), Expect = e-150 Identities = 296/304 (97%) Strand = Plus / Plus Query: 212 tagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattacagct 271 ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 24638131 tagcgtattattataccgtcttcgcatttgaactctttacatgtacgtacaattacagct 24638190 Query: 272 cgaattacttcggatctttctagaggcatttggggcaatgcgtctttgattacagcaaca 331 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 24638191 cgaattacttcggatctttctagaggcatttggggcactgcgtctttgattacagcaaca 24638250 Query: 332 ataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcgaatacac 391 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct: 24638251 ataacatcaccaatacgagcatatcgctgattactagcagctcttatgactcgaatacac 24638310 Query: 392 atcaattttcgagctccactattgtctgctacatttaaaagggtctgaggttgaatcata 451 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct: 24638311 atcaattttcgagctccactgttatctgctacatttaaaagggtctgaggttgaatcata 24638370 Query: 452 ttattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtctttcca 511 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 24638371 ttattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtttttcca 24638430 Query: 512 gaaa 515 |||| Sbjct: 24638431 gaaa 24638434 Score = 462 bits (233), Expect = e-127 Identities = 269/281 (95%) Strand = Plus / Plus Query: 202 attgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtac 261 |||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 32000439 attgtcgttatagcgtattattataccgtcttcgcatttgaattctttacatgtacgtac 32000498 Query: 262 aattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttgat 321 ||||| ||||||||||||||||||||||||||||||||||| || || |||||||||||| Sbjct: 32000499 aattatagctcgaattacttcggatctttctagaggcatttaggacactgcgtctttgat 32000558 Query: 322 tacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgac 381 |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 32000559 tacagcaataataacatcaccaatacgagcatatcgctgattactagcagctcctatgac 32000618 Query: 382 tcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgagg 441 |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct: 32000619 tcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtctgagg 32000678 Query: 442 ttgaatcatattattttgatttcaatttgttatttcaatgc 482 |||||||||||||||||||||| |||||||||||||||||| Sbjct: 32000679 ttgaatcatattattttgattttaatttgttatttcaatgc 32000719 Score = 200 bits (101), Expect = 4e-48 Identities = 135/145 (93%), Gaps = 1/145 (0%) Strand = Plus / Plus Query: 69 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctc 128 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 24637809 ctactagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctc 24637868 Query: 129 tcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaa 188 ||||||||| ||| |||||||||||||| |||||||||||||| || ||||||| ||||| Sbjct: 24637869 tcaattcctaggcgatcgcgccaaaaacgcgagttccttttggatttccttttt-atcaa 24637927 Query: 189 ttataaccgcagcattgtcatcata 213 | |||||||| |||||||| ||||| Sbjct: 24637928 tgataaccgctgcattgtcgtcata 24637952 Score = 163 bits (82), Expect = 9e-37 Identities = 143/162 (88%), Gaps = 1/162 (0%) Strand = Plus / Plus Query: 82 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 141 |||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||| ||| Sbjct: 27557409 taatacttcatgagcttatgaaactattttagtaaaattcaattctctcaattccttggc 27557468 Query: 142 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 201 || || |||||||| | |||||| ||||| || ||||||| |||||| ||||||| ||| Sbjct: 27557469 gattgcaccaaaaacgcaagttccatttggatttccttttt-atcaatgataaccgtagc 27557527 Query: 202 attgtcatcatagcggattattataccgtcttcgcatttgaa 243 | |||| |||||||| |||||||||| ||||||||||||||| Sbjct: 27557528 actgtcgtcatagcgtattattatactgtcttcgcatttgaa 27557569 Score = 93.7 bits (47), Expect = 7e-16 Identities = 80/90 (88%), Gaps = 1/90 (1%) Strand = Plus / Plus Query: 560 tatatctctaatcgaataaattgacttcgtatggggcattttactggccgctatggagat 619 ||||| ||||| |||| ||||||||||| |||||| |||||| ||||| |||||||| || Sbjct: 24638481 tatatttctaaccgaagaaattgacttcatatggg-cattttgctggcagctatggaaat 24638539 Query: 620 agctgctctagctacagnttcagatactcc 649 ||||||||||||||||| ||| |||||||| Sbjct: 24638540 agctgctctagctacagtttcggatactcc 24638569
>emb|AL732379.5|CNS08C92 Oryza sativa chromosome 3, . BAC OSJNBa0025B02 of library OSJNBa from chromosome 3 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 136470 Score = 539 bits (272), Expect = e-150 Identities = 296/304 (97%) Strand = Plus / Plus Query: 212 tagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattacagct 271 ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 70177 tagcgtattattataccgtcttcgcatttgaactctttacatgtacgtacaattacagct 70236 Query: 272 cgaattacttcggatctttctagaggcatttggggcaatgcgtctttgattacagcaaca 331 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 70237 cgaattacttcggatctttctagaggcatttggggcactgcgtctttgattacagcaaca 70296 Query: 332 ataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcgaatacac 391 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct: 70297 ataacatcaccaatacgagcatatcgctgattactagcagctcttatgactcgaatacac 70356 Query: 392 atcaattttcgagctccactattgtctgctacatttaaaagggtctgaggttgaatcata 451 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct: 70357 atcaattttcgagctccactgttatctgctacatttaaaagggtctgaggttgaatcata 70416 Query: 452 ttattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtctttcca 511 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 70417 ttattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtttttcca 70476 Query: 512 gaaa 515 |||| Sbjct: 70477 gaaa 70480 Score = 200 bits (101), Expect = 4e-48 Identities = 135/145 (93%), Gaps = 1/145 (0%) Strand = Plus / Plus Query: 69 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctc 128 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 69855 ctactagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctc 69914 Query: 129 tcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaa 188 ||||||||| ||| |||||||||||||| |||||||||||||| || ||||||| ||||| Sbjct: 69915 tcaattcctaggcgatcgcgccaaaaacgcgagttccttttggatttccttttt-atcaa 69973 Query: 189 ttataaccgcagcattgtcatcata 213 | |||||||| |||||||| ||||| Sbjct: 69974 tgataaccgctgcattgtcgtcata 69998 Score = 93.7 bits (47), Expect = 7e-16 Identities = 80/90 (88%), Gaps = 1/90 (1%) Strand = Plus / Plus Query: 560 tatatctctaatcgaataaattgacttcgtatggggcattttactggccgctatggagat 619 ||||| ||||| |||| ||||||||||| |||||| |||||| ||||| |||||||| || Sbjct: 70527 tatatttctaaccgaagaaattgacttcatatggg-cattttgctggcagctatggaaat 70585 Query: 620 agctgctctagctacagnttcagatactcc 649 ||||||||||||||||| ||| |||||||| Sbjct: 70586 agctgctctagctacagtttcggatactcc 70615
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 539 bits (272), Expect = e-150 Identities = 296/304 (97%) Strand = Plus / Plus Query: 212 tagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattacagct 271 ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 24555600 tagcgtattattataccgtcttcgcatttgaactctttacatgtacgtacaattacagct 24555659 Query: 272 cgaattacttcggatctttctagaggcatttggggcaatgcgtctttgattacagcaaca 331 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 24555660 cgaattacttcggatctttctagaggcatttggggcactgcgtctttgattacagcaaca 24555719 Query: 332 ataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcgaatacac 391 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct: 24555720 ataacatcaccaatacgagcatatcgctgattactagcagctcttatgactcgaatacac 24555779 Query: 392 atcaattttcgagctccactattgtctgctacatttaaaagggtctgaggttgaatcata 451 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct: 24555780 atcaattttcgagctccactgttatctgctacatttaaaagggtctgaggttgaatcata 24555839 Query: 452 ttattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtctttcca 511 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 24555840 ttattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtttttcca 24555899 Query: 512 gaaa 515 |||| Sbjct: 24555900 gaaa 24555903 Score = 462 bits (233), Expect = e-127 Identities = 269/281 (95%) Strand = Plus / Plus Query: 202 attgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtac 261 |||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 32090951 attgtcgttatagcgtattattataccgtcttcgcatttgaattctttacatgtacgtac 32091010 Query: 262 aattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttgat 321 ||||| ||||||||||||||||||||||||||||||||||| || || |||||||||||| Sbjct: 32091011 aattatagctcgaattacttcggatctttctagaggcatttaggacactgcgtctttgat 32091070 Query: 322 tacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgac 381 |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 32091071 tacagcaataataacatcaccaatacgagcatatcgctgattactagcagctcctatgac 32091130 Query: 382 tcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgagg 441 |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct: 32091131 tcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtctgagg 32091190 Query: 442 ttgaatcatattattttgatttcaatttgttatttcaatgc 482 |||||||||||||||||||||| |||||||||||||||||| Sbjct: 32091191 ttgaatcatattattttgattttaatttgttatttcaatgc 32091231 Score = 200 bits (101), Expect = 4e-48 Identities = 135/145 (93%), Gaps = 1/145 (0%) Strand = Plus / Plus Query: 69 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctc 128 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 24555278 ctactagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctc 24555337 Query: 129 tcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaa 188 ||||||||| ||| |||||||||||||| |||||||||||||| || ||||||| ||||| Sbjct: 24555338 tcaattcctaggcgatcgcgccaaaaacgcgagttccttttggatttccttttt-atcaa 24555396 Query: 189 ttataaccgcagcattgtcatcata 213 | |||||||| |||||||| ||||| Sbjct: 24555397 tgataaccgctgcattgtcgtcata 24555421 Score = 163 bits (82), Expect = 9e-37 Identities = 143/162 (88%), Gaps = 1/162 (0%) Strand = Plus / Plus Query: 82 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 141 |||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||| ||| Sbjct: 27648732 taatacttcatgagcttatgaaactattttagtaaaattcaattctctcaattccttggc 27648791 Query: 142 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 201 || || |||||||| | |||||| ||||| || ||||||| |||||| ||||||| ||| Sbjct: 27648792 gattgcaccaaaaacgcaagttccatttggatttccttttt-atcaatgataaccgtagc 27648850 Query: 202 attgtcatcatagcggattattataccgtcttcgcatttgaa 243 | |||| |||||||| |||||||||| ||||||||||||||| Sbjct: 27648851 actgtcgtcatagcgtattattatactgtcttcgcatttgaa 27648892 Score = 93.7 bits (47), Expect = 7e-16 Identities = 80/90 (88%), Gaps = 1/90 (1%) Strand = Plus / Plus Query: 560 tatatctctaatcgaataaattgacttcgtatggggcattttactggccgctatggagat 619 ||||| ||||| |||| ||||||||||| |||||| |||||| ||||| |||||||| || Sbjct: 24555950 tatatttctaaccgaagaaattgacttcatatggg-cattttgctggcagctatggaaat 24556008 Query: 620 agctgctctagctacagnttcagatactcc 649 ||||||||||||||||| ||| |||||||| Sbjct: 24556009 agctgctctagctacagtttcggatactcc 24556038
>gb|AC084748.11| Oryza sativa chromosome 3 BAC OSJNBa0010I09 genomic sequence, complete sequence Length = 144306 Score = 462 bits (233), Expect = e-127 Identities = 269/281 (95%) Strand = Plus / Plus Query: 202 attgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtac 261 |||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 92391 attgtcgttatagcgtattattataccgtcttcgcatttgaattctttacatgtacgtac 92450 Query: 262 aattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttgat 321 ||||| ||||||||||||||||||||||||||||||||||| || || |||||||||||| Sbjct: 92451 aattatagctcgaattacttcggatctttctagaggcatttaggacactgcgtctttgat 92510 Query: 322 tacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgac 381 |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 92511 tacagcaataataacatcaccaatacgagcatatcgctgattactagcagctcctatgac 92570 Query: 382 tcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgagg 441 |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct: 92571 tcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtctgagg 92630 Query: 442 ttgaatcatattattttgatttcaatttgttatttcaatgc 482 |||||||||||||||||||||| |||||||||||||||||| Sbjct: 92631 ttgaatcatattattttgattttaatttgttatttcaatgc 92671
>gb|AC084320.10| Oryza sativa chromosome 3 BAC OSJNBa0091J19 genomic sequence, complete sequence Length = 178158 Score = 462 bits (233), Expect = e-127 Identities = 269/281 (95%) Strand = Plus / Plus Query: 202 attgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtac 261 |||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1564 attgtcgttatagcgtattattataccgtcttcgcatttgaattctttacatgtacgtac 1623 Query: 262 aattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttgat 321 ||||| ||||||||||||||||||||||||||||||||||| || || |||||||||||| Sbjct: 1624 aattatagctcgaattacttcggatctttctagaggcatttaggacactgcgtctttgat 1683 Query: 322 tacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgac 381 |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 1684 tacagcaataataacatcaccaatacgagcatatcgctgattactagcagctcctatgac 1743 Query: 382 tcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgagg 441 |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct: 1744 tcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtctgagg 1803 Query: 442 ttgaatcatattattttgatttcaatttgttatttcaatgc 482 |||||||||||||||||||||| |||||||||||||||||| Sbjct: 1804 ttgaatcatattattttgattttaatttgttatttcaatgc 1844
>gb|DQ069425.1| Typha latifolia ribosomal protein L14 (rpl14) gene, partial cds; chloroplast Length = 366 Score = 402 bits (203), Expect = e-109 Identities = 325/365 (89%), Gaps = 3/365 (0%) Strand = Plus / Minus Query: 86 acttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggcaatc 145 |||||||||||||||||||||||||| ||||||||||| | |||||||||| || ||| Sbjct: 362 acttcaggagctaatgaaactattttagtaaaattcaactgtctcaattcccgagcgatc 303 Query: 146 gcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattg 205 || ||||||||||||||||||||||| || |||| ||||||||| | ||| ||||||||| Sbjct: 302 gcaccaaaaactcgagttccttttggatttccttcttgatcaatgacaactgcagcattg 243 Query: 206 tcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaatt 265 |||||||| || ||||| ||||||| ||| | ||||| |||||||||||||||||||||| Sbjct: 242 tcatcatatcgtattatgataccgttttcacgtttgagttctttacatgtacgtacaatt 183 Query: 266 acagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttgattaca 325 ||||||| ||||||||| ||||||||||||||||| | ||| | ||| |||||||||||| Sbjct: 182 acagctctaattacttctgatctttctagaggcatattgggaactgcttctttgattaca 123 Query: 326 gcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcga 385 ||||||||||||||||||||| |||||||||| ||||||| |||||||||||| |||| Sbjct: 122 gcaacaataacatcaccaatatgagcatatcggtgattac---cagctcctatgattcga 66 Query: 386 atacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgaggttga 445 |||||||| |||||||||||||| || || || |||||||| |||||||||||||||||| Sbjct: 65 atacacattaattttcgagctccgctgttatccgctacattcaaaagggtctgaggttga 6 Query: 446 atcat 450 ||||| Sbjct: 5 atcat 1
>gb|DQ069426.1| Yucca schidigera ribosomal protein L14 (rpl14) gene, partial cds; chloroplast Length = 366 Score = 387 bits (195), Expect = e-104 Identities = 326/369 (88%), Gaps = 3/369 (0%) Strand = Plus / Minus Query: 82 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 141 |||||| || |||||||||||||||||||| ||||||||||| | |||||||||| || Sbjct: 366 taatacctcgggagctaatgaaactattttagtaaaattcaactgtctcaattcccgagc 307 Query: 142 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 201 |||||| ||||||| |||||||||||||||||| |||| ||||||||| | |||||| || Sbjct: 306 aatcgccccaaaaattcgagttccttttgggtttccttcttgatcaatgacaaccgctgc 247 Query: 202 attgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtac 261 |||||||||||| || ||||| ||||||| || | ||||| |||||||||||||||||| Sbjct: 246 attgtcatcatatcgtattatcataccgttgtcacgtttgagttctttacatgtacgtac 187 Query: 262 aattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttgat 321 ||||||||||| ||||||||| ||||||||||||||||| | ||||| ||| |||||||| Sbjct: 186 aattacagctctaattacttctgatctttctagaggcatattgggcactgcttctttgat 127 Query: 322 tacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgac 381 ||||||||||||||| ||||||||| |||||||||| ||||||| |||| ||||||| Sbjct: 126 tacagcaacaataacgtcaccaatatgagcatatcggtgattac---cagcccctatgat 70 Query: 382 tcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgagg 441 ||||||||||||||||| ||||||||| || || ||||||||||| |||||||| ||||| Sbjct: 69 tcgaatacacatcaattctcgagctccgctgttatctgctacattcaaaagggtttgagg 10 Query: 442 ttgaatcat 450 ||||||||| Sbjct: 9 ttgaatcat 1
>emb|AL731738.6|CNS08C7N Oryza sativa chromosome 12, . BAC OSJNBa0005K20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 143618 Score = 363 bits (183), Expect = 5e-97 Identities = 213/223 (95%) Strand = Plus / Minus Query: 69 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctc 128 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 79020 ctactagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctc 78961 Query: 129 tcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaa 188 ||||||||||||| |||||||||||||| |||||||||||||| || ||||||||||||| Sbjct: 78960 tcaattcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaa 78901 Query: 189 ttataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctt 248 | |||||||| |||||||| |||||||| |||||||||||||||||||||||||| |||| Sbjct: 78900 tgataaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctt 78841 Query: 249 tacatgtacgtacaattacagctcgaattacttcggatctttc 291 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 78840 tacatgtacgtacaattacagctcgaattacttcggatctttc 78798
>gb|AC093492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0059G01, complete sequence Length = 141661 Score = 351 bits (177), Expect = 2e-93 Identities = 195/201 (97%) Strand = Plus / Minus Query: 193 aaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttaca 252 |||||| |||||||| |||||||| |||||||||||||||||||||||||| |||||||| Sbjct: 23399 aaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttaca 23340 Query: 253 tgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgc 312 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 23339 tgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgc 23280 Query: 313 gtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagc 372 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 23279 gtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagc 23220 Query: 373 tcctatgactcgaatacacat 393 ||||||||||||||||||||| Sbjct: 23219 tcctatgactcgaatacacat 23199 Score = 174 bits (88), Expect = 2e-40 Identities = 235/280 (83%), Gaps = 3/280 (1%) Strand = Plus / Plus Query: 98 aatgaaactattttggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaact 157 ||||||| |||||| || |||||||||||||||||||| |||| ||| ||||||||| Sbjct: 96297 aatgaaattattttaatacaattcaattctctcaattcc-cggcgatcatgccaaaaacg 96355 Query: 158 cgagttccttttgggttgcctttttgatcaattataaccgcagcattgtcatcatagcgg 217 |||| || ||||| || | ||||||||| || ||||||| | || || ||||||| Sbjct: 96356 tgagtgccctttggatttcttttttgatcgatgataaccgttgtata-tcggcatagcgt 96414 Query: 218 attattataccgtcttcgcatttgaattctttacatgtacgtacaattacagctcgaatt 277 |||||||||| || ||| |||||||| ||||||||||||| || |||||| ||| |||| Sbjct: 96415 attattatactgt-ttcacatttgaactctttacatgtacatataattacttctctaatt 96473 Query: 278 acttcggatctttctagaggcatttggggcaatgcgtctttgattacagcaacaataaca 337 |||| || ||||||||||||||||||||||| ||| ||||| |||||||||||||||||| Sbjct: 96474 actttgggtctttctagaggcatttggggcactgcatctttcattacagcaacaataaca 96533 Query: 338 tcaccaatacgagcatatcgctgattaccagcagctccta 377 ||| ||||| |||||||| | ||||||| |||||| |||| Sbjct: 96534 tcatcaatatgagcatattgttgattactagcagcaccta 96573 Score = 107 bits (54), Expect = 5e-20 Identities = 60/62 (96%) Strand = Plus / Plus Query: 420 ctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaa 479 |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 96608 ctacatttaaaagggtttgaggttgaatcatattattttgatgtcaatttgttatttcaa 96667 Query: 480 tg 481 || Sbjct: 96668 tg 96669
>gb|AC093493.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0072C16, complete sequence Length = 159525 Score = 351 bits (177), Expect = 2e-93 Identities = 195/201 (97%) Strand = Plus / Minus Query: 193 aaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttaca 252 |||||| |||||||| |||||||| |||||||||||||||||||||||||| |||||||| Sbjct: 130171 aaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttaca 130112 Query: 253 tgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgc 312 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 130111 tgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgc 130052 Query: 313 gtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagc 372 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 130051 gtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagc 129992 Query: 373 tcctatgactcgaatacacat 393 ||||||||||||||||||||| Sbjct: 129991 tcctatgactcgaatacacat 129971
>emb|AJ428413.1|CFE428413 Calycanthus fertilis var. ferax complete chloroplast genome Length = 153337 Score = 349 bits (176), Expect = 7e-93 Identities = 337/390 (86%), Gaps = 3/390 (0%) Strand = Plus / Plus Query: 69 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctc 128 |||||||||||||||| |||||||| |||||||| |||||||| || ||||| || | || Sbjct: 81909 ctactagtatttataagacttcaggggctaatgagactattttagtgaaatttaactttc 81968 Query: 129 tcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaa 188 |||||||| |||||||| ||||||||||||||||||||||| || |||| |||||||| Sbjct: 81969 tcaattcccgagcaatcgctccaaaaactcgagttccttttggatttccttcttgatcaa 82028 Query: 189 ttataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctt 248 | | ||| || |||||||||||||| || ||||| ||||||| |||| ||||| ||||| Sbjct: 82029 tgacaactgccgcattgtcatcatatcgtattatcataccgttgtcgcgtttgagttctt 82088 Query: 249 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 308 |||||||||||||||||||||||||||| ||||| |||||||| |||||||| | ||||| Sbjct: 82089 tacatgtacgtacaattacagctcgaataacttctgatctttcgagaggcatattgggca 82148 Query: 309 atgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccag 368 ||| ||||||||||||||||||||||| ||||| ||| |||||||||| |||||| Sbjct: 82149 ctgcttctttgattacagcaacaataacgtcaccgatatgagcatatcggcgattac--- 82205 Query: 369 cagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattta 428 ||| ||||||| |||||| |||||||||| |||||| || || ||||| |||||||| | Sbjct: 82206 tagcccctatgattcgaatgcacatcaattctcgagccccgctgttgtccgctacattca 82265 Query: 429 aaagggtctgaggttgaatcatattatttt 458 || ||||||||||||||||||||| ||||| Sbjct: 82266 aatgggtctgaggttgaatcatatcatttt 82295
>gb|AY916449.1| Phalaenopsis aphrodite subsp. formosana plastid, complete genome Length = 148964 Score = 323 bits (163), Expect = 4e-85 Identities = 344/401 (85%), Gaps = 5/401 (1%) Strand = Plus / Plus Query: 80 tataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcg 139 ||||| ||||| || ||||||||||| ||||| ||||||||||| | || |||||| ||| Sbjct: 82583 tataagacttcgggtgctaatgaaacgattttagtaaaattcaactgtcgcaattc-tcg 82641 Query: 140 -gcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 198 ||||| || ||||||| ||||||||||||||| || |||| ||||||||| |||||||| Sbjct: 82642 agcaattgcaccaaaaattcgagttccttttggatttccttcttgatcaatgataaccgc 82701 Query: 199 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 258 |||||||||||||| || ||||| || |||| || | ||||| |||||||||||| || Sbjct: 82702 tgcattgtcatcatatcgtattatcatgccgttgtcacgtttgagttctttacatgtgcg 82761 Query: 259 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 318 |||||| ||||||| ||||| ||| ||||||||||||||||| | ||||| ||| ||||| Sbjct: 82762 tacaatcacagctctaattatttctgatctttctagaggcatgttgggcactgcttcttt 82821 Query: 319 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 378 ||||||||||||||||||||| |||| | |||||||||| ||||||| ||| |||||| Sbjct: 82822 gattacagcaacaataacatcgccaagatgagcatatcggtgattac---cagttcctat 82878 Query: 379 gactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctg 438 || |||||||||||| |||||| |||||||||| || || |||||||| ||||||||||| Sbjct: 82879 gattcgaatacacattaatttttgagctccactgttatccgctacattcaaaagggtctg 82938 Query: 439 aggttgaatcatattattttgatttcaatttgttatttcaa 479 |||||||||||||| ||||| | || ||| | ||||||||| Sbjct: 82939 aggttgaatcatatcatttttaatttaatctcttatttcaa 82979
>emb|AJ879453.1| Acorus calamus chloroplast, complete genome Length = 153821 Score = 319 bits (161), Expect = 6e-84 Identities = 328/383 (85%), Gaps = 3/383 (0%) Strand = Plus / Plus Query: 76 tatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattc 135 |||||||||||| |||||||||| ||||||||||| || |||||||| | ||||||||| Sbjct: 80435 tatttataatacctcaggagctagggaaactattttagtgaaattcaaatgtctcaattc 80494 Query: 136 ctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataac 195 | || ||||| ||||||||||||||||||||||| || |||| ||||||||| | ||| Sbjct: 80495 ccgagcgatcgcaccaaaaactcgagttccttttggattcccttcttgatcaatgacaac 80554 Query: 196 cgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgt 255 || |||||||||||||| || ||||| ||||||| || | ||||| |||||||||||| Sbjct: 80555 tgctgcattgtcatcatatcgtattatcataccgttgtcacgtttgagttctttacatgt 80614 Query: 256 acgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtc 315 ||||||||||||||||| | ||||| ||||||||||||| ||| | ||| | ||| || Sbjct: 80615 acgtacaattacagctctgaccacttctgatctttctagagacatattgggtactgcttc 80674 Query: 316 tttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcc 375 ||||||||||||||||||||| ||||||||| |||||||||| |||||| ||||| Sbjct: 80675 tttgattacagcaacaataacgtcaccaatatgagcatatcggcgattac---tggctcc 80731 Query: 376 tatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggt 435 ||||| ||||||||||||||||| |||||| || || || || ||||||||||||||||| Sbjct: 80732 tatgattcgaatacacatcaattctcgagccccgctgttatccgctacatttaaaagggt 80791 Query: 436 ctgaggttgaatcatattatttt 458 ||||||||||||||||| ||||| Sbjct: 80792 ctgaggttgaatcatatcatttt 80814
>gb|DQ347958.1| Solanum bulbocastanum cultivar PT29 chloroplast, complete genome Length = 155371 Score = 307 bits (155), Expect = 2e-80 Identities = 319/373 (85%), Gaps = 3/373 (0%) Strand = Plus / Plus Query: 78 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 137 |||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 82356 tttataatacctcgggagctaatgaaactattttagtaaaatttaattctctcaattccc 82415 Query: 138 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 197 ||| || || ||||||| ||||||||||||||| || |||| ||||||||| | ||| | Sbjct: 82416 gggcgattgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaactg 82475 Query: 198 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 257 |||||||||||||||| |||||||| || |||| || | ||||| ||||||||| |||| Sbjct: 82476 cagcattgtcatcatatcggattatcatcccgttgtcacgtttgagttctttacaggtac 82535 Query: 258 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 317 | ||||||||||||| | |||||| ||||||||||| ||||| | || | ||| |||| Sbjct: 82536 gcacaattacagctctgactacttctgatctttctaggggcatatttggtactgcttctt 82595 Query: 318 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 377 |||| |||||||||||||| ||||||||| |||||||||| |||| | |||||||| Sbjct: 82596 tgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctccta 82652 Query: 378 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 437 ||| ||||||||||||||||| |||||| || ||||| || |||||||||||| |||||| Sbjct: 82653 tgattcgaatacacatcaattctcgagccccgctattatccgctacatttaaatgggtct 82712 Query: 438 gaggttgaatcat 450 ||||||||||||| Sbjct: 82713 gaggttgaatcat 82725
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 305 bits (154), Expect = 1e-79 Identities = 184/194 (94%) Strand = Plus / Minus Query: 330 caataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcgaatac 389 |||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||| Sbjct: 24916826 caattacatcaccaatacgagcatatcgctgattactagcagctcctatgacttgaatac 24916767 Query: 390 acatcaattttcgagctccactattgtctgctacatttaaaagggtctgaggttgaatca 449 |||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||| | Sbjct: 24916766 acattaattttcgagctccactattatctgctacatttaaaagggtctgaggttaaatta 24916707 Query: 450 tattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtctttc 509 ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| Sbjct: 24916706 tattattttgatttcaatttgctatttcaatgcaaaaagatgaaagaaatattgtctttc 24916647 Query: 510 cagaaagaaaaacc 523 ||||||||| |||| Sbjct: 24916646 cagaaagaagaacc 24916633 Score = 101 bits (51), Expect = 3e-18 Identities = 81/90 (90%), Gaps = 1/90 (1%) Strand = Plus / Minus Query: 560 tatatctctaatcgaataaattgacttcgtatggggcattttactggccgctatggagat 619 ||||| ||||| |||| |||||||||||||||||| |||||| ||||| |||||||| || Sbjct: 24916596 tatatttctaaccgaagaaattgacttcgtatggg-cattttgctggcagctatggaaat 24916538 Query: 620 agctgctctagctacagnttcagatactcc 649 ||||||||||||||||| ||| |||||||| Sbjct: 24916537 agctgctctagctacagtttcggatactcc 24916508 Score = 75.8 bits (38), Expect = 2e-10 Identities = 68/78 (87%) Strand = Plus / Plus Query: 133 ttcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattat 192 ||||||||| |||| ||||||||| |||||||||||||| || | ||||||| |||| || Sbjct: 20875041 ttcctcggcgatcgtgccaaaaacgcgagttccttttggatttcttttttgaccaatgat 20875100 Query: 193 aaccgcagcattgtcatc 210 ||||| ||||||||||| Sbjct: 20875101 aaccgttgcattgtcatc 20875118 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Minus Query: 114 taaaattcaattctctcaattcctcggcaatcgcgccaaaaac 156 ||||||||||| ||||| |||||||||| |||||||||||||| Sbjct: 32000475 taaaattcaatactctcgattcctcggcgatcgcgccaaaaac 32000433
>dbj|AP006523.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1215B07 Length = 165957 Score = 305 bits (154), Expect = 1e-79 Identities = 184/194 (94%) Strand = Plus / Minus Query: 330 caataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcgaatac 389 |||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||| Sbjct: 78109 caattacatcaccaatacgagcatatcgctgattactagcagctcctatgacttgaatac 78050 Query: 390 acatcaattttcgagctccactattgtctgctacatttaaaagggtctgaggttgaatca 449 |||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||| | Sbjct: 78049 acattaattttcgagctccactattatctgctacatttaaaagggtctgaggttaaatta 77990 Query: 450 tattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtctttc 509 ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| Sbjct: 77989 tattattttgatttcaatttgctatttcaatgcaaaaagatgaaagaaatattgtctttc 77930 Query: 510 cagaaagaaaaacc 523 ||||||||| |||| Sbjct: 77929 cagaaagaagaacc 77916 Score = 101 bits (51), Expect = 3e-18 Identities = 81/90 (90%), Gaps = 1/90 (1%) Strand = Plus / Minus Query: 560 tatatctctaatcgaataaattgacttcgtatggggcattttactggccgctatggagat 619 ||||| ||||| |||| |||||||||||||||||| |||||| ||||| |||||||| || Sbjct: 77879 tatatttctaaccgaagaaattgacttcgtatggg-cattttgctggcagctatggaaat 77821 Query: 620 agctgctctagctacagnttcagatactcc 649 ||||||||||||||||| ||| |||||||| Sbjct: 77820 agctgctctagctacagtttcggatactcc 77791
>gb|DQ069421.1| Acorus americanus ribosomal protein L14 (rpl14) gene, partial cds; chloroplast Length = 366 Score = 299 bits (151), Expect = 6e-78 Identities = 315/369 (85%), Gaps = 3/369 (0%) Strand = Plus / Minus Query: 82 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 141 |||||| |||||||||| ||||||||||| || |||||||| | |||||||||| || Sbjct: 366 taatacctcaggagctagggaaactattttagtgaaattcaaatgtctcaattcccgagc 307 Query: 142 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 201 ||||| ||||||||||||||||||||||| || |||| ||||||||| | ||| || || Sbjct: 306 gatcgcaccaaaaactcgagttccttttggattcccttcttgatcaatgacaactgctgc 247 Query: 202 attgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtac 261 |||||||||||| || ||||| ||||||| || | ||||| |||||||||||||||||| Sbjct: 246 attgtcatcatatcgtattatcataccgttgtcacgtttgagttctttacatgtacgtac 187 Query: 262 aattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttgat 321 ||||||||||| | ||||| ||||||||||||| ||| | ||| | ||| |||||||| Sbjct: 186 aattacagctctgaccacttctgatctttctagagacatattgggtactgcttctttgat 127 Query: 322 tacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgac 381 ||||||||||||||| ||||||||| |||||||||| |||||| |||||||||| Sbjct: 126 tacagcaacaataacgtcaccaatatgagcatatcggcgattac---tggctcctatgat 70 Query: 382 tcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgagg 441 ||||||||||||||||| |||||| || || || || ||||||||||||||||||||||| Sbjct: 69 tcgaatacacatcaattctcgagccccgctgttatccgctacatttaaaagggtctgagg 10 Query: 442 ttgaatcat 450 ||||||||| Sbjct: 9 ttgaatcat 1
>gb|DQ383815.1| Helianthus annuus cultivar line HA383 chloroplast, complete genome Length = 151104 Score = 299 bits (151), Expect = 6e-78 Identities = 324/381 (85%), Gaps = 3/381 (0%) Strand = Plus / Plus Query: 78 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 137 |||||||||| || |||||||||||||||||||| |||||||| || | ||||||||| Sbjct: 80082 tttataatacctcgggagctaatgaaactattttagtaaaattgaactgtctcaattctc 80141 Query: 138 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 197 ||||||||| |||||||| |||||||||||||| || |||| ||||||||| | ||| | Sbjct: 80142 gggcaatcgcaccaaaaacgcgagttccttttggatttccttcttgatcaatcacaactg 80201 Query: 198 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 257 |||||||||||||||| || ||||| ||||||| || | ||| | ||||||||| |||| Sbjct: 80202 cagcattgtcatcatatcgtattatcataccgttgtcacgtttaagttctttacaagtac 80261 Query: 258 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 317 | ||||||||||||| | ||||| ||||||||||||||||| | || | |||||||| Sbjct: 80262 ggacaattacagctctgaccacttctgatctttctagaggcatgtttggaactgcgtctt 80321 Query: 318 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 377 |||| |||||||||||||| ||||||||| |||||||||| |||| | |||||||| Sbjct: 80322 tgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctccta 80378 Query: 378 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 437 ||| ||||||||||||||||| |||||| || || || ||||||||||| ||| |||||| Sbjct: 80379 tgattcgaatacacatcaattctcgagccccgctgttatctgctacattcaaatgggtct 80438 Query: 438 gaggttgaatcatattatttt 458 ||||||||||||||| ||||| Sbjct: 80439 gaggttgaatcatatcatttt 80459
>gb|DQ386163.1| Solanum tuberosum cultivar Desiree chloroplast, complete genome Length = 155298 Score = 299 bits (151), Expect = 6e-78 Identities = 318/373 (85%), Gaps = 3/373 (0%) Strand = Plus / Plus Query: 78 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 137 |||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 82305 tttataatacctcgggagctaatgaaactattttagtaaaatttaattctctcaattccc 82364 Query: 138 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 197 ||| || || ||||||| ||||||||| ||||| || |||| ||||||||| | ||| | Sbjct: 82365 gggcgattgcaccaaaaattcgagttccctttggatttccttcttgatcaataacaactg 82424 Query: 198 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 257 |||||||||||||||| |||||||| || |||| || | ||||| ||||||||| |||| Sbjct: 82425 cagcattgtcatcatatcggattatcatcccgttgtcacgtttgagttctttacaggtac 82484 Query: 258 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 317 | ||||||||||||| | |||||| ||||||||||| ||||| | || | ||| |||| Sbjct: 82485 gcacaattacagctctgactacttctgatctttctaggggcatatttggtactgcttctt 82544 Query: 318 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 377 |||| |||||||||||||| ||||||||| |||||||||| |||| | |||||||| Sbjct: 82545 tgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctccta 82601 Query: 378 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 437 ||| ||||||||||||||||| |||||| || ||||| || |||||||||||| |||||| Sbjct: 82602 tgattcgaatacacatcaattctcgagccccgctattatccgctacatttaaatgggtct 82661 Query: 438 gaggttgaatcat 450 ||||||||||||| Sbjct: 82662 gaggttgaatcat 82674
>gb|DQ231562.1| Solanum tuberosum chloroplast, complete genome Length = 155312 Score = 299 bits (151), Expect = 6e-78 Identities = 318/373 (85%), Gaps = 3/373 (0%) Strand = Plus / Plus Query: 78 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 137 |||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 82317 tttataatacctcgggagctaatgaaactattttagtaaaatttaattctctcaattccc 82376 Query: 138 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 197 ||| || || ||||||| ||||||||| ||||| || |||| ||||||||| | ||| | Sbjct: 82377 gggcgattgcaccaaaaattcgagttccctttggatttccttcttgatcaataacaactg 82436 Query: 198 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 257 |||||||||||||||| |||||||| || |||| || | ||||| ||||||||| |||| Sbjct: 82437 cagcattgtcatcatatcggattatcatcccgttgtcacgtttgagttctttacaggtac 82496 Query: 258 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 317 | ||||||||||||| | |||||| ||||||||||| ||||| | || | ||| |||| Sbjct: 82497 gcacaattacagctctgactacttctgatctttctaggggcatatttggtactgcttctt 82556 Query: 318 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 377 |||| |||||||||||||| ||||||||| |||||||||| |||| | |||||||| Sbjct: 82557 tgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctccta 82613 Query: 378 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 437 ||| ||||||||||||||||| |||||| || ||||| || |||||||||||| |||||| Sbjct: 82614 tgattcgaatacacatcaattctcgagccccgctattatccgctacatttaaatgggtct 82673 Query: 438 gaggttgaatcat 450 ||||||||||||| Sbjct: 82674 gaggttgaatcat 82686
>gb|DQ069423.1| Nuphar advena ribosomal protein L14 (rpl14) gene, partial cds; chloroplast Length = 366 Score = 291 bits (147), Expect = 1e-75 Identities = 314/369 (85%), Gaps = 3/369 (0%) Strand = Plus / Minus Query: 82 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 141 ||||||||| ||||||||||| ||||| || || ||||| || | ||||||||| || Sbjct: 366 taatacttcgggagctaatgagactatcttagtgaaatttaactgtctcaattcacgagc 307 Query: 142 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 201 ||||| |||||||||||||| |||||||| || |||| ||||||||| | ||| || || Sbjct: 306 aatcgaaccaaaaactcgagtgccttttggatttccttcttgatcaatgacaactgctgc 247 Query: 202 attgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtac 261 |||||||||||| || ||||| ||||||| |||| ||||| |||||||||||||||||| Sbjct: 246 attgtcatcataccgtattatcataccgttgtcgcgtttgagttctttacatgtacgtac 187 Query: 262 aattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttgat 321 ||||||||||| |||||||| |||||||| || ||||| | |||| ||| |||||||| Sbjct: 186 aattacagctctgattacttctgatctttccaggggcatatttggcactgcttctttgat 127 Query: 322 tacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgac 381 ||||||||||||||| ||||| ||| |||||||||| | ||||| ||||||||||| Sbjct: 126 tacagcaacaataacgtcaccgatatgagcatatcggtaattac---tagctcctatgat 70 Query: 382 tcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgagg 441 |||||||||||||| |||||||||||| || ||||| |||||||| ||| |||||||||| Sbjct: 69 tcgaatacacatcagttttcgagctccgctgttgtccgctacattcaaatgggtctgagg 10 Query: 442 ttgaatcat 450 ||||||||| Sbjct: 9 ttgaatcat 1
>gb|AY582139.1| Panax ginseng chloroplast, complete genome Length = 156318 Score = 291 bits (147), Expect = 1e-75 Identities = 323/381 (84%), Gaps = 3/381 (0%) Strand = Plus / Plus Query: 78 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 137 |||||||||| || |||||||||||||||||||| |||||||| || | |||||||||| Sbjct: 82667 tttataatacctccggagctaatgaaactattttagtaaaatttaactgtctcaattccc 82726 Query: 138 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 197 |||||| || |||||||| |||||||| |||||||| |||| |||||| || | ||||| Sbjct: 82727 gggcaattgcaccaaaaacccgagttccctttgggtttccttcttgatcgatgacaaccg 82786 Query: 198 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 257 |||||||||||||||| || ||||| ||||||| || | ||||| ||||||||| |||| Sbjct: 82787 cagcattgtcatcatatcgtattatcataccgttatcacgtttgagttctttacaagtac 82846 Query: 258 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 317 ||||||||||||||| | ||||| |||||| |||| ||||| | |||| ||| |||| Sbjct: 82847 gtacaattacagctctgaccacttctgatcttgctaggggcatgtttggcactgcttctt 82906 Query: 318 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 377 |||| |||||||||||||| ||||| ||| |||||||||| |||| | |||||||| Sbjct: 82907 tgatcacagcaacaataacgtcaccgatatgagcatatcgacgattgc---tagctccta 82963 Query: 378 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 437 ||| ||||||||||||||||| |||||| || || || || |||||||| |||||||||| Sbjct: 82964 tgattcgaatacacatcaattctcgagccccgctgttatccgctacattcaaaagggtct 83023 Query: 438 gaggttgaatcatattatttt 458 ||||||||||||||| ||||| Sbjct: 83024 gaggttgaatcatatcatttt 83044
>emb|AM087200.2| Lycopersicon esculentum complete chloroplast genome Length = 155460 Score = 291 bits (147), Expect = 1e-75 Identities = 317/373 (84%), Gaps = 3/373 (0%) Strand = Plus / Plus Query: 78 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 137 |||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 82452 tttataatacctcgggagctaatgaaactattttagtaaaatttaattctctcaattccc 82511 Query: 138 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 197 ||| || || ||||||| ||||||||||||||| || |||| ||||||||| | ||| | Sbjct: 82512 gggcgattgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaactg 82571 Query: 198 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 257 ||||||||||||| || || ||||| || |||| || | ||||| ||||||||| |||| Sbjct: 82572 cagcattgtcatcgtatcgtattatcatcccgttgtcacgtttgagttctttacaggtac 82631 Query: 258 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 317 | ||||||||||||| | |||||| ||||||||||| ||||| | || | ||| |||| Sbjct: 82632 gcacaattacagctctgactacttctgatctttctaggggcatatttggtactgcttctt 82691 Query: 318 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 377 |||| |||||||||||||| ||||||||| |||||||||| |||| | |||||||| Sbjct: 82692 tgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctccta 82748 Query: 378 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 437 ||| ||||||||||||||||| |||||| || ||||| || |||||||||||| |||||| Sbjct: 82749 tgattcgaatacacatcaattctcgagccccgctattatccgctacatttaaatgggtct 82808 Query: 438 gaggttgaatcat 450 ||||||||||||| Sbjct: 82809 gaggttgaatcat 82821
>gb|DQ347959.1| Lycopersicon esculentum cultivar LA3023 chloroplast, complete genome Length = 155461 Score = 291 bits (147), Expect = 1e-75 Identities = 317/373 (84%), Gaps = 3/373 (0%) Strand = Plus / Plus Query: 78 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 137 |||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 82449 tttataatacctcgggagctaatgaaactattttagtaaaatttaattctctcaattccc 82508 Query: 138 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 197 ||| || || ||||||| ||||||||||||||| || |||| ||||||||| | ||| | Sbjct: 82509 gggcgattgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaactg 82568 Query: 198 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 257 ||||||||||||| || || ||||| || |||| || | ||||| ||||||||| |||| Sbjct: 82569 cagcattgtcatcgtatcgtattatcatcccgttgtcacgtttgagttctttacaggtac 82628 Query: 258 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 317 | ||||||||||||| | |||||| ||||||||||| ||||| | || | ||| |||| Sbjct: 82629 gcacaattacagctctgactacttctgatctttctaggggcatatttggtactgcttctt 82688 Query: 318 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 377 |||| |||||||||||||| ||||||||| |||||||||| |||| | |||||||| Sbjct: 82689 tgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctccta 82745 Query: 378 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 437 ||| ||||||||||||||||| |||||| || ||||| || |||||||||||| |||||| Sbjct: 82746 tgattcgaatacacatcaattctcgagccccgctattatccgctacatttaaatgggtct 82805 Query: 438 gaggttgaatcat 450 ||||||||||||| Sbjct: 82806 gaggttgaatcat 82818
>gb|DQ424856.1| Vitis vinifera cultivar Maxxa chloroplast, complete genome Length = 160928 Score = 289 bits (146), Expect = 6e-75 Identities = 322/380 (84%), Gaps = 3/380 (0%) Strand = Plus / Plus Query: 79 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 138 ||||||||| ||||| ||||| ||||||||||| |||||||| || | |||||||||| Sbjct: 85542 ttataatacctcaggggctaaggaaactattttagtaaaatttaactgtctcaattcccg 85601 Query: 139 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 198 | | ||||| ||||||| |||||||||||||||||| |||| ||||||||| ||||| || Sbjct: 85602 gacgatcgcaccaaaaattcgagttccttttgggtttccttcttgatcaataataactgc 85661 Query: 199 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 258 ||||||||||||||| || ||||| ||||||| || | ||||| ||||||||| ||||| Sbjct: 85662 agcattgtcatcatatcgtattatcataccgttgtcacgtttgagttctttacaggtacg 85721 Query: 259 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 318 |||||||||||||| |||||||| ||||||||||||||||| | || | | | ||||| Sbjct: 85722 tacaattacagctctgattacttctgatctttctagaggcatatttggtactacttcttt 85781 Query: 319 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 378 ||| |||||||||||||| ||||||||| |||| ||||| |||||| || |||||| Sbjct: 85782 gatcacagcaacaataacgtcaccaatatgagcgtatcggcgattac---tagttcctat 85838 Query: 379 gactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctg 438 || ||||||||||||||||| ||| || || || ||||| |||||||| ||| ||||||| Sbjct: 85839 gattcgaatacacatcaattctcgggccccgctgttgtccgctacattcaaatgggtctg 85898 Query: 439 aggttgaatcatattatttt 458 ||||||||||||| ||||| Sbjct: 85899 gggttgaatcatatcatttt 85918
>gb|DQ383816.1| Lactuca sativa cultivar Salinas chloroplast, complete genome Length = 152772 Score = 287 bits (145), Expect = 2e-74 Identities = 321/379 (84%), Gaps = 3/379 (0%) Strand = Plus / Plus Query: 80 tataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcg 139 |||||||| ||||| ||||||||||||||||| |||||||| || | ||||||||| | Sbjct: 80638 tataatacctcaggggctaatgaaactattttagtaaaattgaactgtctcaattctcgg 80697 Query: 140 gcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgca 199 |||||||| ||||||||||| ||||||||||| || |||| ||||||||| | ||| || Sbjct: 80698 gcaatcgcaccaaaaactcgcgttccttttggatttccttcttgatcaatcacaactgcg 80757 Query: 200 gcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgt 259 |||||||||||||| || ||||| ||||||| || | ||| | ||||||||| ||||| Sbjct: 80758 gcattgtcatcatatcgtattatcataccgttgtcacgtttaagttctttacaagtacgg 80817 Query: 260 acaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttg 319 ||||||||||||| | ||||| ||||||||||||||||| | || | |||||||||| Sbjct: 80818 acaattacagctctgaccacttctgatctttctagaggcatgtttggaactgcgtctttg 80877 Query: 320 attacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatg 379 || |||||||||||||| ||||||||| |||||||||| |||| | |||||||||| Sbjct: 80878 atcacagcaacaataacgtcaccaatatgagcatatcggcgattgc---tagctcctatg 80934 Query: 380 actcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctga 439 | ||||||||||||||||| |||||| || || || ||||||||||| ||| |||||||| Sbjct: 80935 attcgaatacacatcaattctcgagccccgctgttatctgctacattcaaatgggtctga 80994 Query: 440 ggttgaatcatattatttt 458 ||||||||||||| ||||| Sbjct: 80995 ggttgaatcatatcatttt 81013
>emb|AJ627251.1| Nymphaea alba chloroplast, complete genome Length = 159930 Score = 287 bits (145), Expect = 2e-74 Identities = 318/375 (84%), Gaps = 3/375 (0%) Strand = Plus / Plus Query: 76 tatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattc 135 ||||||||||||||| ||||||||||| ||||| || || ||||| || | ||||||||| Sbjct: 86608 tatttataatacttcgggagctaatgagactatcttagtgaaatttaactgtctcaattc 86667 Query: 136 ctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataac 195 ||||||| ||||||||||| || |||||||| || |||| ||||||||| | ||| Sbjct: 86668 acgagcaatcgaaccaaaaactcgggtgccttttggatttccttcttgatcaatgacaac 86727 Query: 196 cgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgt 255 || |||||||||||||| |||||||| ||||||| |||| |||| |||||||||||| Sbjct: 86728 tgctgcattgtcatcataccggattatcataccgttgtcgcgcttgagttctttacatgt 86787 Query: 256 acgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtc 315 ||||||||||||||||| |||||||| |||||||| || ||||| | |||| ||| || Sbjct: 86788 acgtacaattacagctctgattacttctgatctttccaggggcatatttggcactgcttc 86847 Query: 316 tttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcc 375 ||||||||||||||||||||| ||||| ||| |||||||||| | ||||| |||||| Sbjct: 86848 tttgattacagcaacaataacgtcaccgatatgagcatatcggtaattac---tagctcc 86904 Query: 376 tatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggt 435 ||||| |||||||||||| | |||||| ||||| || ||||| |||||||| |||||||| Sbjct: 86905 tatgattcgaatacacataagttttcgggctccgctgttgtccgctacattcaaaagggt 86964 Query: 436 ctgaggttgaatcat 450 ||||||||||||||| Sbjct: 86965 ctgaggttgaatcat 86979
>dbj|AP007232.1| Lactuca sativa chloroplast DNA, complete genome Length = 152765 Score = 287 bits (145), Expect = 2e-74 Identities = 321/379 (84%), Gaps = 3/379 (0%) Strand = Plus / Plus Query: 80 tataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcg 139 |||||||| ||||| ||||||||||||||||| |||||||| || | ||||||||| | Sbjct: 80636 tataatacctcaggggctaatgaaactattttagtaaaattgaactgtctcaattctcgg 80695 Query: 140 gcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgca 199 |||||||| ||||||||||| ||||||||||| || |||| ||||||||| | ||| || Sbjct: 80696 gcaatcgcaccaaaaactcgcgttccttttggatttccttcttgatcaatcacaactgcg 80755 Query: 200 gcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgt 259 |||||||||||||| || ||||| ||||||| || | ||| | ||||||||| ||||| Sbjct: 80756 gcattgtcatcatatcgtattatcataccgttgtcacgtttaagttctttacaagtacgg 80815 Query: 260 acaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttg 319 ||||||||||||| | ||||| ||||||||||||||||| | || | |||||||||| Sbjct: 80816 acaattacagctctgaccacttctgatctttctagaggcatgtttggaactgcgtctttg 80875 Query: 320 attacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatg 379 || |||||||||||||| ||||||||| |||||||||| |||| | |||||||||| Sbjct: 80876 atcacagcaacaataacgtcaccaatatgagcatatcggcgattgc---tagctcctatg 80932 Query: 380 actcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctga 439 | ||||||||||||||||| |||||| || || || ||||||||||| ||| |||||||| Sbjct: 80933 attcgaatacacatcaattctcgagccccgctgttatctgctacattcaaatgggtctga 80992 Query: 440 ggttgaatcatattatttt 458 ||||||||||||| ||||| Sbjct: 80993 ggttgaatcatatcatttt 81011
>emb|AJ970307.1| Cucumis sativus chloroplast complete genome Length = 155293 Score = 285 bits (144), Expect = 9e-74 Identities = 323/382 (84%), Gaps = 3/382 (0%) Strand = Plus / Plus Query: 78 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 137 |||||||||||||||| |||||||||| |||||| || ||||| || | ||||||||| Sbjct: 82960 tttataatacttcaggtgctaatgaaattatttttgtgaaatttaactgtctcaattctc 83019 Query: 138 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 197 ||||||||| ||||||| ||||||||||||||| || |||| ||||||||| | ||||| Sbjct: 83020 gggcaatcgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaaccg 83079 Query: 198 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 257 |||||||||||||||| || ||||| ||||| | ||| | ||||| ||||||||| |||| Sbjct: 83080 cagcattgtcatcatatcgtattatcataccattttctcgtttgagttctttacaagtac 83139 Query: 258 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 317 ||||||||||||||| || ||||| |||||||||| ||| | | || | || | | Sbjct: 83140 gtacaattacagctctgatcacttctgatctttctaaaggtgtatttgggacggctttct 83199 Query: 318 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 377 ||||||||||||||||||| ||||||||| |||||||||| |||||| ||| |||| Sbjct: 83200 tgattacagcaacaataacgtcaccaatatgagcatatcgtcgattac---tagccccta 83256 Query: 378 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 437 ||| ||||||||||||||||| ||| ||||| || || ||||||||||| |||||||| | Sbjct: 83257 tgattcgaatacacatcaattctcgggctccgctgttatctgctacattcaaaagggttt 83316 Query: 438 gaggttgaatcatattattttg 459 |||||||||||||||||||||| Sbjct: 83317 gaggttgaatcatattattttg 83338
>gb|AF441853.1|AF441853 Cucumis sativus RBL1 mRNA, complete cds; chloroplast gene for chloroplast product Length = 703 Score = 285 bits (144), Expect = 9e-74 Identities = 323/382 (84%), Gaps = 3/382 (0%) Strand = Plus / Minus Query: 78 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 137 |||||||||||||||| |||||||||| |||||| || ||||| || | ||||||||| Sbjct: 436 tttataatacttcaggtgctaatgaaattatttttgtgaaatttaactgtctcaattctc 377 Query: 138 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 197 ||||||||| ||||||| ||||||||||||||| || |||| ||||||||| | ||||| Sbjct: 376 gggcaatcgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaaccg 317 Query: 198 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 257 |||||||||||||||| || ||||| ||||| | ||| | ||||| ||||||||| |||| Sbjct: 316 cagcattgtcatcatatcgtattatcataccattttctcgtttgagttctttacaagtac 257 Query: 258 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 317 ||||||||||||||| || ||||| |||||||||| ||| | | || | || | | Sbjct: 256 gtacaattacagctctgatcacttctgatctttctaaaggtgtatttgggacggctttct 197 Query: 318 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 377 ||||||||||||||||||| ||||||||| |||||||||| |||||| ||| |||| Sbjct: 196 tgattacagcaacaataacgtcaccaatatgagcatatcgtcgattac---tagccccta 140 Query: 378 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 437 ||| ||||||||||||||||| ||| ||||| || || ||||||||||| |||||||| | Sbjct: 139 tgattcgaatacacatcaattctcgggctccgctgttatctgctacattcaaaagggttt 80 Query: 438 gaggttgaatcatattattttg 459 |||||||||||||||||||||| Sbjct: 79 gaggttgaatcatattattttg 58
>gb|DQ119058.1| Cucumis sativus cultivar Baekmibaekdadagi plastid, complete genome Length = 155527 Score = 285 bits (144), Expect = 9e-74 Identities = 323/382 (84%), Gaps = 3/382 (0%) Strand = Plus / Plus Query: 78 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 137 |||||||||||||||| |||||||||| |||||| || ||||| || | ||||||||| Sbjct: 83188 tttataatacttcaggtgctaatgaaattatttttgtgaaatttaactgtctcaattctc 83247 Query: 138 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 197 ||||||||| ||||||| ||||||||||||||| || |||| ||||||||| | ||||| Sbjct: 83248 gggcaatcgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaaccg 83307 Query: 198 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 257 |||||||||||||||| || ||||| ||||| | ||| | ||||| ||||||||| |||| Sbjct: 83308 cagcattgtcatcatatcgtattatcataccattttctcgtttgagttctttacaagtac 83367 Query: 258 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 317 ||||||||||||||| || ||||| |||||||||| ||| | | || | || | | Sbjct: 83368 gtacaattacagctctgatcacttctgatctttctaaaggtgtatttgggacggctttct 83427 Query: 318 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 377 ||||||||||||||||||| ||||||||| |||||||||| |||||| ||| |||| Sbjct: 83428 tgattacagcaacaataacgtcaccaatatgagcatatcgtcgattac---tagccccta 83484 Query: 378 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 437 ||| ||||||||||||||||| ||| ||||| || || ||||||||||| |||||||| | Sbjct: 83485 tgattcgaatacacatcaattctcgggctccgctgttatctgctacattcaaaagggttt 83544 Query: 438 gaggttgaatcatattattttg 459 |||||||||||||||||||||| Sbjct: 83545 gaggttgaatcatattattttg 83566
>dbj|AB240139.1| Nicotiana tomentosiformis chloroplast DNA, complete sequence Length = 155745 Score = 283 bits (143), Expect = 4e-73 Identities = 316/373 (84%), Gaps = 3/373 (0%) Strand = Plus / Plus Query: 78 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 137 |||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 82940 tttataatacctcgggagctaatgaaactattttagtaaaatttaattctctcaattccc 82999 Query: 138 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 197 ||| || || ||||||| ||||||||||||||| || |||| ||||||||| | ||| | Sbjct: 83000 gggcgattgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaactg 83059 Query: 198 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 257 |||||||||||||||| || |||||||| |||| || | ||||| ||||||||| || | Sbjct: 83060 cagcattgtcatcatatcgtattattatcccgttgtcacgtttgagttctttacaggtcc 83119 Query: 258 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 317 | ||||||||||||| | |||||| ||||||||||| ||||| | || | || |||| Sbjct: 83120 gcacaattacagctctgactacttctgatctttctaggggcatatttggtatggcttctt 83179 Query: 318 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 377 |||| |||||||||||||| ||||||||| |||||||||| |||| | |||||||| Sbjct: 83180 tgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctccta 83236 Query: 378 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 437 ||| ||||||||||||||||| |||||| || || || || |||||||||||| |||||| Sbjct: 83237 tgattcgaatacacatcaattctcgagccccgctgttatccgctacatttaaatgggtct 83296 Query: 438 gaggttgaatcat 450 ||||||||||||| Sbjct: 83297 gaggttgaatcat 83309
>emb|Z00044.2|CHNTXX Nicotiana tabacum chloroplast genome DNA Length = 155943 Score = 276 bits (139), Expect = 9e-71 Identities = 315/373 (84%), Gaps = 3/373 (0%) Strand = Plus / Plus Query: 78 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 137 |||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 83177 tttataatacctcgggagctaatgaaactattttagtaaaatttaattctctcaattccc 83236 Query: 138 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 197 ||| || || ||||||| ||||||||||||||| || |||| ||||||||| | ||| | Sbjct: 83237 gggcgattgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaactg 83296 Query: 198 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 257 |||||||||||||||| || ||||| || |||| || | ||||| ||||||||| || | Sbjct: 83297 cagcattgtcatcatatcgtattatcatcccgttgtcacgtttgagttctttacaggtcc 83356 Query: 258 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 317 | ||||||||||||| | |||||| ||||||||||| ||||| | || | || |||| Sbjct: 83357 gcacaattacagctctgactacttctgatctttctaggggcatatttggtacggcttctt 83416 Query: 318 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 377 |||| |||||||||||||| ||||||||| |||||||||| |||| | |||||||| Sbjct: 83417 tgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctccta 83473 Query: 378 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 437 ||| ||||||||||||||||| |||||| || || || || |||||||||||| |||||| Sbjct: 83474 tgattcgaatacacatcaattctcgagccccgctgttatccgctacatttaaatgggtct 83533 Query: 438 gaggttgaatcat 450 ||||||||||||| Sbjct: 83534 gaggttgaatcat 83546
>emb|AJ400848.1|SOL400848 Spinacia oleracea complete chloroplast genome Length = 150725 Score = 276 bits (139), Expect = 9e-71 Identities = 317/375 (84%), Gaps = 6/375 (1%) Strand = Plus / Plus Query: 79 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 138 ||||||||| ||||||||||||||||||||||| | ||| || || || ||||||| Sbjct: 79239 ttataatacctcaggagctaatgaaactattttcgcaaattt---ttgtcgcaattcccg 79295 Query: 139 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 198 |||||| || ||||||| ||||||||||||||| || |||| ||||||||| ||||| || Sbjct: 79296 ggcaattgcaccaaaaattcgagttccttttggatttccttcttgatcaatgataactgc 79355 Query: 199 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 258 ||||||||||||||| || ||||| ||||||| |||| ||| | ||||||||| ||||| Sbjct: 79356 agcattgtcatcatatcgtattatcataccgttgtcgcgttttagttctttacaagtacg 79415 Query: 259 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 318 ||||| |||||||| || ||||| |||||||||| ||| | | ||| | ||| ||||| Sbjct: 79416 tacaactacagctctgatcacttctgatctttctaagggcgtgttggggattgcttcttt 79475 Query: 319 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 378 ||| |||||||||||||| |||||||||||||||||||| | || | ||||||||| Sbjct: 79476 gatcacagcaacaataacgtcaccaatacgagcatatcgacggttgc---tagctcctat 79532 Query: 379 gactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctg 438 || ||||||||||||||||| |||||| || || |||||||||||||| ||| ||||||| Sbjct: 79533 gattcgaatacacatcaattctcgagccccgctgttgtctgctacattcaaatgggtctg 79592 Query: 439 aggttgaatcatatt 453 ||||||||||||||| Sbjct: 79593 aggttgaatcatatt 79607
>emb|AJ316582.1|ABE316582 Atropa belladonna complete chloroplast genome, strain Ab5p(kan) Length = 156687 Score = 276 bits (139), Expect = 9e-71 Identities = 315/373 (84%), Gaps = 3/373 (0%) Strand = Plus / Plus Query: 78 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 137 |||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 83420 tttataatacctcgggagctaatgaaactattttagtaaaatttaattctctcaattccc 83479 Query: 138 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 197 ||| || || ||||||| ||||||||||||||| || |||| ||||||||| | ||| | Sbjct: 83480 gggcgattgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaactg 83539 Query: 198 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 257 |||||||||||||||| || ||||| || |||| || | ||||| ||||||||| |||| Sbjct: 83540 cagcattgtcatcatatcgtattatcatcccgttgtcacgtttgagttctttacaggtac 83599 Query: 258 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 317 | ||||||||||||| | || ||| ||||||||||| ||||| | || | ||| |||| Sbjct: 83600 gcacaattacagctctgactatttctgatctttctaggggcatatttggtactgcttctt 83659 Query: 318 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 377 |||| |||||||||||||| ||||||||| |||||||||| |||| | |||||||| Sbjct: 83660 tgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctccta 83716 Query: 378 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 437 ||| |||||||||||| |||| |||||| || || || || |||||||||||| |||||| Sbjct: 83717 tgattcgaatacacattaattctcgagccccgctgttatccgctacatttaaatgggtct 83776 Query: 438 gaggttgaatcat 450 ||||||||||||| Sbjct: 83777 gaggttgaatcat 83789
>dbj|AB237912.1| Nicotiana sylvestris chloroplast DNA, complete sequence Length = 155941 Score = 276 bits (139), Expect = 9e-71 Identities = 315/373 (84%), Gaps = 3/373 (0%) Strand = Plus / Plus Query: 78 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 137 |||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 83175 tttataatacctcgggagctaatgaaactattttagtaaaatttaattctctcaattccc 83234 Query: 138 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 197 ||| || || ||||||| ||||||||||||||| || |||| ||||||||| | ||| | Sbjct: 83235 gggcgattgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaactg 83294 Query: 198 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 257 |||||||||||||||| || ||||| || |||| || | ||||| ||||||||| || | Sbjct: 83295 cagcattgtcatcatatcgtattatcatcccgttgtcacgtttgagttctttacaggtcc 83354 Query: 258 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 317 | ||||||||||||| | |||||| ||||||||||| ||||| | || | || |||| Sbjct: 83355 gcacaattacagctctgactacttctgatctttctaggggcatatttggtacggcttctt 83414 Query: 318 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 377 |||| |||||||||||||| ||||||||| |||||||||| |||| | |||||||| Sbjct: 83415 tgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctccta 83471 Query: 378 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 437 ||| ||||||||||||||||| |||||| || || || || |||||||||||| |||||| Sbjct: 83472 tgattcgaatacacatcaattctcgagccccgctgttatccgctacatttaaatgggtct 83531 Query: 438 gaggttgaatcat 450 ||||||||||||| Sbjct: 83532 gaggttgaatcat 83544
>gb|DQ345959.1| Gossypium hirsutum cultivar coker 310 FR chloroplast, complete genome Length = 160301 Score = 274 bits (138), Expect = 3e-70 Identities = 314/372 (84%), Gaps = 3/372 (0%) Strand = Plus / Plus Query: 79 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 138 ||||||||| || |||||||||||||||||||| || ||||| || | |||||||||| Sbjct: 85087 ttataatacctcgggagctaatgaaactattttagtgaaatttaactgtctcaattcccg 85146 Query: 139 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 198 ||| ||||| ||||||| ||||||||||||||| || |||| ||||||||| | ||| || Sbjct: 85147 ggcgatcgcaccaaaaattcgagttccttttggatttccttcttgatcaatgacaacggc 85206 Query: 199 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 258 ||||||||||||||| || ||||| || |||| |||| ||||| |||||||| ||||| Sbjct: 85207 agcattgtcatcatatcgtattatcatcccgttgtcgcgtttgagttctttacgagtacg 85266 Query: 259 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 318 |||||||||||||| || ||||| |||||||||||||| | | || | ||| || || Sbjct: 85267 tacaattacagctctgatcacttctgatctttctagaggtgtatttggtactgcttcctt 85326 Query: 319 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 378 ||| |||||||||||||| ||||||||| |||||||||| |||||| ||||||||| Sbjct: 85327 gatcacagcaacaataacgtcaccaatatgagcatatcggcgattac---tagctcctat 85383 Query: 379 gactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctg 438 |||||||||||||||||||| ||| || || || || ||||||||||| ||| ||||||| Sbjct: 85384 gactcgaatacacatcaattctcgggccccgctgttatctgctacattcaaatgggtctg 85443 Query: 439 aggttgaatcat 450 |||||||||||| Sbjct: 85444 aggttgaatcat 85455
>emb|X13336.1|CHSORP Spinacia oleracea plastid genes rps3, rps19, rpl14, rpl16 and rpl22 for ribosomal proteins S3, S19, L14, L16 and L22 Length = 4102 Score = 254 bits (128), Expect = 3e-64 Identities = 317/378 (83%), Gaps = 9/378 (2%) Strand = Plus / Minus Query: 79 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 138 ||||||||| ||||||||||||||||||||||| | ||| || || || ||||||| Sbjct: 3697 ttataatacctcaggagctaatgaaactattttcgcaaattt---ttgtcgcaattcccg 3641 Query: 139 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataacc-- 196 |||||| || ||||||| ||||||||||||||| || |||| ||||||||| ||||| Sbjct: 3640 ggcaattgcaccaaaaattcgagttccttttggatttccttcttgatcaatgataacaac 3581 Query: 197 -gcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgt 255 ||||||||||||||||| || ||||| ||||||| |||| ||| | ||||||||| || Sbjct: 3580 tgcagcattgtcatcatatcgtattatcataccgttgtcgcgttttagttctttacaagt 3521 Query: 256 acgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtc 315 |||||||| |||||||| || ||||| |||||||||| ||| | | ||| | ||| || Sbjct: 3520 acgtacaactacagctctgatcacttctgatctttctaagggcgtgttggggattgcttc 3461 Query: 316 tttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcc 375 |||||| |||||||||||||| |||||||||||||||||||| | || | |||||| Sbjct: 3460 tttgatcacagcaacaataacgtcaccaatacgagcatatcgacggttgc---tagctcc 3404 Query: 376 tatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggt 435 ||||| ||||||||||||||||| |||||| || || |||||||||||||| ||| |||| Sbjct: 3403 tatgattcgaatacacatcaattctcgagccccgctgttgtctgctacattcaaatgggt 3344 Query: 436 ctgaggttgaatcatatt 453 |||||||||||||||||| Sbjct: 3343 ctgaggttgaatcatatt 3326
>dbj|AP000423.1| Arabidopsis thaliana chloroplast genomic DNA, complete sequence, strain:Columbia Length = 154478 Score = 250 bits (126), Expect = 5e-63 Identities = 317/380 (83%), Gaps = 3/380 (0%) Strand = Plus / Plus Query: 79 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 138 ||||||||| ||||||||||||||||||||||| ||||| || |||| |||||||||| Sbjct: 80696 ttataatacctcaggagctaatgaaactattttagtaaagtttaattgtctcaattcccg 80755 Query: 139 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 198 | ||||| ||||||||||||||||||||||| || |||| ||||||||| | ||| || Sbjct: 80756 tgggatcgccccaaaaactcgagttccttttggatttccttcttgatcaatgacaactgc 80815 Query: 199 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 258 |||||||||||||| || ||||| | || | | | ||||| ||||||||| ||||| Sbjct: 80816 ggcattgtcatcatatcgtattatcgtcccattgttacgtttgagttctttacaagtacg 80875 Query: 259 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 318 |||||||||||||| ||| ||||| |||||||||||||| | | || | ||| ||||| Sbjct: 80876 tacaattacagctctaatcacttctgatctttctagaggagtatttggtattgcttcttt 80935 Query: 319 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 378 |||||||||||||||||| ||||||||| |||||||||| |||||| ||||||||| Sbjct: 80936 gattacagcaacaataacgtcaccaatatgagcatatcggcgattac---tagctcctat 80992 Query: 379 gactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctg 438 | ||||||||||||||||| || ||| || || |||||||||||||| ||| ||| || Sbjct: 80993 tattcgaatacacatcaattctctagccccgctgttgtctgctacattcaaataggtttg 81052 Query: 439 aggttgaatcatattatttt 458 ||||||||||||| ||||| Sbjct: 81053 tggttgaatcatatcatttt 81072
>dbj|AP004556.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0026A08 Length = 171272 Score = 242 bits (122), Expect = 1e-60 Identities = 158/170 (92%) Strand = Plus / Minus Query: 178 tttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtcttcgca 237 |||||||||||| |||||| | ||||||| |||||||| ||||||||||| |||||||| Sbjct: 4998 tttttgatcaatgataacctctgcattgttgtcatagcgtattattataccatcttcgca 4939 Query: 238 tttgaattctttacatgtacgtacaattacagctcgaattacttcggatctttctagagg 297 |||||| |||||||||||| ||||||||||| ||| |||||||||||||||||||||||| Sbjct: 4938 tttgaactctttacatgtatgtacaattacacctcaaattacttcggatctttctagagg 4879 Query: 298 catttggggcaatgcgtctttgattacagcaacaataacatcaccaatac 347 ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 4878 catttggggcactgcgtctttgattacagcaacaataacatcaccaatac 4829
>dbj|AP005415.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0091M20 Length = 132976 Score = 242 bits (122), Expect = 1e-60 Identities = 158/170 (92%) Strand = Plus / Minus Query: 178 tttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtcttcgca 237 |||||||||||| |||||| | ||||||| |||||||| ||||||||||| |||||||| Sbjct: 88345 tttttgatcaatgataacctctgcattgttgtcatagcgtattattataccatcttcgca 88286 Query: 238 tttgaattctttacatgtacgtacaattacagctcgaattacttcggatctttctagagg 297 |||||| |||||||||||| ||||||||||| ||| |||||||||||||||||||||||| Sbjct: 88285 tttgaactctttacatgtatgtacaattacacctcaaattacttcggatctttctagagg 88226 Query: 298 catttggggcaatgcgtctttgattacagcaacaataacatcaccaatac 347 ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 88225 catttggggcactgcgtctttgattacagcaacaataacatcaccaatac 88176
>gb|DQ069424.1| Ranunculus macranthus ribosomal protein L14 (rpl14) gene, partial cds; chloroplast Length = 366 Score = 238 bits (120), Expect = 2e-59 Identities = 310/370 (83%), Gaps = 5/370 (1%) Strand = Plus / Minus Query: 82 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcg-g 140 |||||||||||| ||||||||||||||||| ||||||||||| | |||||| || ||| | Sbjct: 366 taatacttcaggggctaatgaaactattttagtaaaattcaactgtctcaactc-tcgag 308 Query: 141 caatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcag 200 | || || ||||||||||||||||||||||| || |||| ||||||||| | ||| || | Sbjct: 307 cgattgcaccaaaaactcgagttccttttggatttccttcttgatcaatgacaactgctg 248 Query: 201 cattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgta 260 ||||||||||||| | ||||| ||||| | || | ||||| ||||||||| || |||| Sbjct: 247 cattgtcatcatattgtattatcataccattgtcacgtttgagttctttacacgtgcgta 188 Query: 261 caattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttga 320 |||||||||||| || ||||| ||||||| ||||||||| | ||| | ||| ||||||| Sbjct: 187 caattacagctctgatcacttctgatctttgtagaggcatattgggaactgcttctttga 128 Query: 321 ttacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatga 380 |||| ||||||||||| || |||||| ||||||| || |||||| ||||||||||| Sbjct: 127 ttaccgcaacaataacgtcgccaatatgagcataacgtcgattac---tagctcctatga 71 Query: 381 ctcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgag 440 || ||||||||| ||||||| ||| || || ||||| |||||||||||| |||||||| Sbjct: 70 ttctaatacacattaattttctagccccgctgttgtccgctacatttaaataggtctgag 11 Query: 441 gttgaatcat 450 |||||||||| Sbjct: 10 gttgaatcat 1
>emb|AJ506156.2|ATR506156 Amborella trichopoda chloroplast genomic DNA, complete sequence Length = 162686 Score = 234 bits (118), Expect = 3e-58 Identities = 306/368 (83%), Gaps = 3/368 (0%) Strand = Plus / Plus Query: 83 aatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggca 142 ||||| || ||||||||||| ||||| || || |||||||| | |||||||||| | || Sbjct: 87322 aatacctcgggagctaatgatactatcttagtgaaattcaaatgtctcaattccccagcg 87381 Query: 143 atcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagca 202 |||| ||||| ||||||||||||||||| || || | | ||||||| | ||| || ||| Sbjct: 87382 atcgaaccaaagactcgagttccttttggatttccctctggatcaataacaactgctgca 87441 Query: 203 ttgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtaca 262 ||||||||||| || ||||||||||||| || | ||||| ||||||||||||||||||| Sbjct: 87442 ttgtcatcatatcgtattattataccgttgtcacgtttgagttctttacatgtacgtaca 87501 Query: 263 attacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttgatt 322 |||||||||| || ||||| |||||||| || ||||| | ||| | ||| ||||||||| Sbjct: 87502 attacagctctgatcacttctgatctttccaggggcatattgggtactgcttctttgatt 87561 Query: 323 acagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgact 382 |||||||||||||| ||||||||| |||||||||| | |||| |||||||| || | Sbjct: 87562 acagcaacaataacgtcaccaatatgagcatatcgggggttac---tagctcctacgatt 87618 Query: 383 cgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgaggt 442 |||||||||||||||| |||||| || || ||||| |||||||| ||| ||| |||| | Sbjct: 87619 cgaatacacatcaattctcgagccccgctgttgtccgctacattcaaataggtttgagct 87678 Query: 443 tgaatcat 450 |||||||| Sbjct: 87679 tgaatcat 87686
>emb|AJ271079.2|OEL271079 Oenothera elata subsp. hookeri chloroplast plastome I, complete sequence Length = 163935 Score = 234 bits (118), Expect = 3e-58 Identities = 315/380 (82%), Gaps = 3/380 (0%) Strand = Plus / Plus Query: 79 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 138 ||||||||| ||||| ||||||||||||||||| || ||| | || ||||||||||| | Sbjct: 85802 ttataatacctcaggtgctaatgaaactattttagtgaaacttaactctctcaattcgtg 85861 Query: 139 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 198 ||||||||| ||||||||||| ||||||||||| || |||| ||||||||| | ||| || Sbjct: 85862 ggcaatcgcaccaaaaactcgggttccttttggatttccttcttgatcaatgacaacagc 85921 Query: 199 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 258 ||||||||||||||| || ||||| |||||||| || ||||| | ||||||||| ||||| Sbjct: 85922 agcattgtcatcatatcgtattatgataccgtcgtcacatttaagttctttacaagtacg 85981 Query: 259 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 318 |||||||||||||| | ||||| ||||||||||| | | || ||||| || || Sbjct: 85982 tacaattacagctctgaccacttctgatctttctagggaggtgcttggtaatgcttcctt 86041 Query: 319 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 378 ||| ||||||||||||| ||||| ||| |||||||||| |||||| |||||| || Sbjct: 86042 gatcacagcaacaataatgtcaccgatatgagcatatcgacgattac---tagctccgat 86098 Query: 379 gactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctg 438 || |||||||||||| |||| |||||| ||||| || || || ||||| ||| |||| || Sbjct: 86099 gattcgaatacacattaattctcgagccccactgttatccgcgacattcaaacgggtttg 86158 Query: 439 aggttgaatcatattatttt 458 |||||||||||||| ||||| Sbjct: 86159 aggttgaatcatatcatttt 86178
>gb|AY780259.1| Eucalyptus globulus subsp. globulus chloroplast, complete genome Length = 160286 Score = 218 bits (110), Expect = 2e-53 Identities = 313/380 (82%), Gaps = 3/380 (0%) Strand = Plus / Plus Query: 79 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 138 ||||||||| ||||| ||||||||||||||||| || ||||| || | ||||||||| Sbjct: 85487 ttataatacctcaggtgctaatgaaactattttagtgaaatttaactgtctcaattctcg 85546 Query: 139 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 198 ||||||||| ||||||||||||||||||||||| || |||| ||||||||| | ||| || Sbjct: 85547 ggcaatcgcaccaaaaactcgagttccttttggatttccttcttgatcaatcacaactgc 85606 Query: 199 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 258 |||||| |||||||| || ||||| ||||||| || | ||| | ||||||||| ||||| Sbjct: 85607 agcattatcatcatatcgtattatcataccgttgtcacgtttaagttctttacaagtacg 85666 Query: 259 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 318 |||||||||||||| || || || |||||||||||||| | | || ||||| || || Sbjct: 85667 tacaattacagctctgatcacctctgatctttctagaggtgtgtttggtaatgcttcctt 85726 Query: 319 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 378 ||| ||||||||||||| ||||| ||| |||||||||| |||||| ||||||||| Sbjct: 85727 gatcacagcaacaataatgtcaccgatatgagcatatcggcgattac---tagctcctat 85783 Query: 379 gactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctg 438 || || ||||||||| |||| ||| || || || || || |||||||| ||| || | || Sbjct: 85784 gattctaatacacattaattctcgggccccgctgttatccgctacattcaaatggctttg 85843 Query: 439 aggttgaatcatattatttt 458 |||||||||||||| ||||| Sbjct: 85844 aggttgaatcatatcatttt 85863
>gb|DQ231548.1| Brassica rapa subsp. pekinensis chloroplast sequence Length = 153482 Score = 216 bits (109), Expect = 7e-53 Identities = 312/377 (82%), Gaps = 7/377 (1%) Strand = Plus / Plus Query: 79 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 138 ||||||||||||||||||||||||||||||||| ||||| || |||| |||||||||| Sbjct: 79787 ttataatacttcaggagctaatgaaactattttagtaaagtttaattgtctcaattcccg 79846 Query: 139 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 198 | ||||| |||||||| |||||||||||||| || |||| ||||||||| | ||| || Sbjct: 79847 tgggatcgccccaaaaacgcgagttccttttggatttccttcttgatcaatgacaactgc 79906 Query: 199 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 258 |||||||| ||||| || ||||| | || | | | ||||| ||||||||| ||||| Sbjct: 79907 ggcattgtcgtcatatcgtattatcgtcccattcttacgtttgagttctttacaagtacg 79966 Query: 259 tacaattacagctcgaattacttcggatctttctagag--gcatttggggcaatgcgtct 316 |||||||||||||| | ||||| ||||||||||||| | ||||||| | ||| || Sbjct: 79967 tacaattacagctctgaccacttctgatctttctagagtagtatttggg--attgcttcc 80024 Query: 317 ttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcct 376 |||||||||||||||||||| ||||||||| ||||||| || |||||| ||||||| Sbjct: 80025 ttgattacagcaacaataacgtcaccaatatgagcatagcggcgattac---tagctcct 80081 Query: 377 atgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtc 436 || | |||||||||||||||||||| ||| || || |||||||||||||| ||| ||| Sbjct: 80082 attattcgaatacacatcaattttctagccccgctgttgtctgctacattcaaataggtt 80141 Query: 437 tgaggttgaatcatatt 453 || |||||||||||||| Sbjct: 80142 tgtggttgaatcatatt 80158
>dbj|AP002983.1| Lotus japonicus chloroplast DNA, complete genome Length = 150519 Score = 212 bits (107), Expect = 1e-51 Identities = 313/381 (82%), Gaps = 3/381 (0%) Strand = Plus / Plus Query: 78 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 137 ||||||||| ||||| ||||||||||||||||| || ||||| || | |||||||||| Sbjct: 78574 tttataatatctcaggcgctaatgaaactattttagtgaaattgaactgtctcaattccc 78633 Query: 138 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 197 ||| || |||| ||||| ||||||||||||||| || |||| ||||||||| | ||| | Sbjct: 78634 gggcgattgcgcaaaaaattcgagttccttttggatttccttcttgatcaatgacaactg 78693 Query: 198 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 257 ||||||| |||||||| | ||||||||||| | | ||||| ||||||||| |||| Sbjct: 78694 cagcattatcatcatactgtattattataccattgctacgtttgagttctttacaagtac 78753 Query: 258 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 317 ||||||||||||||| || ||||| |||||||||| || | | || | ||| |||| Sbjct: 78754 gtacaattacagctctgatcacttctgatctttctaagggtgtattcggtactgcttctt 78813 Query: 318 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 377 ||||||||||||||| || ||||||||| ||| ||||| |||||| ||| ||||| Sbjct: 78814 tgattacagcaacaacaatgtcaccaatataagcgtatcgtcgattactagc---tccta 78870 Query: 378 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 437 ||| |||||||||||||||||| || ||||| ||||| || |||||||||||| |||| | Sbjct: 78871 tgattcgaatacacatcaatttgcgggctccgctattatcggctacatttaaatgggttt 78930 Query: 438 gaggttgaatcatattatttt 458 ||||||||||||||| ||||| Sbjct: 78931 gaggttgaatcatatcatttt 78951
>dbj|AP008982.1| Triticum aestivum mitochondrial DNA, complete genome Length = 452528 Score = 210 bits (106), Expect = 4e-51 Identities = 277/334 (82%), Gaps = 15/334 (4%) Strand = Plus / Minus Query: 69 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctc 128 |||||||||||| |||||| ||||||||| |||| ||| |||| || ||||||| || Sbjct: 99133 ctactagtatttttaatacctcaggagctcatgagactcttttagtgaaattcataagtc 99074 Query: 129 tcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaa 188 |||||||| || ||||| ||||||||||||||||||||||| || |||| |||||||| Sbjct: 99073 tcaattcccgagcgatcgcaccaaaaactcgagttccttttggatttccttcttgatcaa 99014 Query: 189 ttataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctt 248 | | ||||| |||||||| || ||||| ||||||| || | ||||| ||||| Sbjct: 99013 tgacaaccg--------tcatcatatcgtattatcataccgttgtcacgtttgagttctt 98962 Query: 249 tacatgtacgtacaattacagctcgaattacttcgg----atctttctagaggcatttgg 304 ||||||||||||||||||||||||| ||||||| | |||||||||||||||||| | Sbjct: 98961 tacatgtacgtacaattacagctcgtcttacttctgtctgatctttctagaggcattttg 98902 Query: 305 ggcaatgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgatta 364 |||| ||| ||||||||||||||||||||||| ||||||||| ||||||||| |||||| Sbjct: 98901 ggcactgcttctttgattacagcaacaataacgtcaccaatatgagcatatcagtgatta 98842 Query: 365 ccagcagctcctatgactcgaatacacatcaatt 398 | ||||||||| || ||||||||| ||||||| Sbjct: 98841 c---cagctcctaagattcgaatacatatcaatt 98811
>gb|M15176.1|MZECPPG Zea mays chloroplast Eco x DNA Length = 1368 Score = 194 bits (98), Expect = 3e-46 Identities = 104/106 (98%) Strand = Plus / Minus Query: 253 tgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgc 312 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 1365 tgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgc 1306 Query: 313 gtctttgattacagcaacaataacatcaccaatacgagcatatcgc 358 ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 1305 gtctttgattacagcaataataacatcaccaatacgagcatatcgc 1260 Score = 161 bits (81), Expect = 4e-36 Identities = 101/105 (96%), Gaps = 2/105 (1%) Strand = Plus / Minus Query: 419 gctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgttatttca 478 ||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||| Sbjct: 1199 gctacatttaaaagggtctgaggttgaatcatattatttgg-tttccatttgttatttca 1141 Query: 479 a-tgcaaaaggatgaaagaaatattgtctttccagaaagaaaaac 522 | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1140 aatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaac 1096 Score = 139 bits (70), Expect = 1e-29 Identities = 94/101 (93%), Gaps = 1/101 (0%) Strand = Plus / Minus Query: 549 ttttagggttctatatctctaatcgaataaattgacttcgtatggggcattttactggcc 608 |||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||| Sbjct: 1068 ttttggggttctatatctctaatcgaagaaattgacttcgtatggg-cattttactggca 1010 Query: 609 gctatggagatagctgctctagctacagnttcagatactcc 649 ||||| |||||||||||||||||||||| ||| |||||||| Sbjct: 1009 gctatagagatagctgctctagctacagtttcggatactcc 969 Score = 107 bits (54), Expect = 5e-20 Identities = 60/62 (96%) Strand = Plus / Minus Query: 297 gcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagcatatc 356 |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 1261 gcatttggggcactgcgtctttgattacagcaataataacatcaccaatacgagcatatc 1202 Query: 357 gc 358 || Sbjct: 1201 gc 1200
>dbj|AP006174.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0229B10 Length = 114509 Score = 186 bits (94), Expect = 6e-44 Identities = 146/162 (90%), Gaps = 1/162 (0%) Strand = Plus / Plus Query: 82 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 141 |||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||| ||| Sbjct: 54859 taatacttcatgagcttatgaaactattttagtaaaattcaattctctcaattccttggc 54918 Query: 142 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 201 || ||||||||||| | |||||| ||||| || ||||||| |||||| ||||||||||| Sbjct: 54919 gattgcgccaaaaacgcaagttccatttggattcccttttt-atcaatgataaccgcagc 54977 Query: 202 attgtcatcatagcggattattataccgtcttcgcatttgaa 243 ||||| |||||||| |||||||||||||||||||||||||| Sbjct: 54978 attgttgtcatagcgtattattataccgtcttcgcatttgaa 55019
>dbj|AP006067.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0569E11 Length = 157319 Score = 186 bits (94), Expect = 6e-44 Identities = 146/162 (90%), Gaps = 1/162 (0%) Strand = Plus / Plus Query: 82 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 141 |||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||| ||| Sbjct: 137662 taatacttcatgagcttatgaaactattttagtaaaattcaattctctcaattccttggc 137721 Query: 142 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 201 || ||||||||||| | |||||| ||||| || ||||||| |||||| ||||||||||| Sbjct: 137722 gattgcgccaaaaacgcaagttccatttggattcccttttt-atcaatgataaccgcagc 137780 Query: 202 attgtcatcatagcggattattataccgtcttcgcatttgaa 243 ||||| |||||||| |||||||||||||||||||||||||| Sbjct: 137781 attgttgtcatagcgtattattataccgtcttcgcatttgaa 137822
>dbj|AP005389.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0091C18 Length = 154416 Score = 186 bits (94), Expect = 6e-44 Identities = 146/162 (90%), Gaps = 1/162 (0%) Strand = Plus / Plus Query: 82 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 141 |||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 130073 taatacttcatgagcttatgaaactattttagtaaaattcaattctctcaattcctcggc 130132 Query: 142 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 201 || ||||||||||| | |||||| ||||| || ||||||| |||||| ||||||||||| Sbjct: 130133 cattgcgccaaaaacgcaagttccatttggattcccttttt-atcaatgataaccgcagc 130191 Query: 202 attgtcatcatagcggattattataccgtcttcgcatttgaa 243 | ||| |||||||| |||||||||||||||||||||||||| Sbjct: 130192 actgttgtcatagcgtattattataccgtcttcgcatttgaa 130233
>dbj|AP005298.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1770_H03 Length = 189893 Score = 186 bits (94), Expect = 6e-44 Identities = 146/162 (90%), Gaps = 1/162 (0%) Strand = Plus / Plus Query: 82 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 141 |||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 66843 taatacttcatgagcttatgaaactattttagtaaaattcaattctctcaattcctcggc 66902 Query: 142 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 201 || ||||||||||| | |||||| ||||| || ||||||| |||||| ||||||||||| Sbjct: 66903 cattgcgccaaaaacgcaagttccatttggattcccttttt-atcaatgataaccgcagc 66961 Query: 202 attgtcatcatagcggattattataccgtcttcgcatttgaa 243 | ||| |||||||| |||||||||||||||||||||||||| Sbjct: 66962 actgttgtcatagcgtattattataccgtcttcgcatttgaa 67003
>gb|DQ167399.1| Oryza sativa (indica cultivar-group) isolate 93-11 mitochondrion, complete genome Length = 491515 Score = 170 bits (86), Expect = 4e-39 Identities = 212/254 (83%), Gaps = 15/254 (5%) Strand = Plus / Minus Query: 149 ccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtca 208 ||||||||||||||||||||||| || |||| ||||| ||| | ||||| ||| Sbjct: 331098 ccaaaaactcgagttccttttggatttccttcttgattaatgacaaccg--------tca 331047 Query: 209 tcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattaca 268 ||||| || ||||| ||||||| || | ||||| ||||||||||||||||||||||||| Sbjct: 331046 tcatatcgtattatcataccgttgtcacgtttgagttctttacatgtacgtacaattaca 330987 Query: 269 gctcgaattacttcgg----atctttctagaggcatttggggcaatgcgtctttgattac 324 ||||| ||||||| | |||||||||||||||||| ||||| ||| ||||||||||| Sbjct: 330986 gctcgtcttacttctgtctgatctttctagaggcattttgggcactgcttctttgattac 330927 Query: 325 agcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcg 384 |||||||||||| ||||||||| ||||||||| ||||||| ||||||||| || ||| Sbjct: 330926 agcaacaataacgtcaccaatatgagcatatcagtgattac---cagctcctaagattcg 330870 Query: 385 aatacacatcaatt 398 |||||| ||||||| Sbjct: 330869 aatacatatcaatt 330856 Score = 60.0 bits (30), Expect = 1e-05 Identities = 48/54 (88%) Strand = Plus / Minus Query: 69 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattca 122 ||||||||||||||||||| ||||||||| |||| ||| |||| || ||||||| Sbjct: 331166 ctactagtatttataatacctcaggagctcatgagactctttttgtgaaattca 331113
>gb|DQ167807.1| Oryza sativa (japonica cultivar-group) isolate PA64S mitochondrion, complete genome Length = 490673 Score = 170 bits (86), Expect = 4e-39 Identities = 212/254 (83%), Gaps = 15/254 (5%) Strand = Plus / Minus Query: 149 ccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtca 208 ||||||||||||||||||||||| || |||| ||||| ||| | ||||| ||| Sbjct: 330288 ccaaaaactcgagttccttttggatttccttcttgattaatgacaaccg--------tca 330237 Query: 209 tcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattaca 268 ||||| || ||||| ||||||| || | ||||| ||||||||||||||||||||||||| Sbjct: 330236 tcatatcgtattatcataccgttgtcacgtttgagttctttacatgtacgtacaattaca 330177 Query: 269 gctcgaattacttcgg----atctttctagaggcatttggggcaatgcgtctttgattac 324 ||||| ||||||| | |||||||||||||||||| ||||| ||| ||||||||||| Sbjct: 330176 gctcgtcttacttctgtctgatctttctagaggcattttgggcactgcttctttgattac 330117 Query: 325 agcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcg 384 |||||||||||| ||||||||| ||||||||| ||||||| ||||||||| || ||| Sbjct: 330116 agcaacaataacgtcaccaatatgagcatatcagtgattac---cagctcctaagattcg 330060 Query: 385 aatacacatcaatt 398 |||||| ||||||| Sbjct: 330059 aatacatatcaatt 330046 Score = 60.0 bits (30), Expect = 1e-05 Identities = 48/54 (88%) Strand = Plus / Minus Query: 69 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattca 122 ||||||||||||||||||| ||||||||| |||| ||| |||| || ||||||| Sbjct: 330356 ctactagtatttataatacctcaggagctcatgagactctttttgtgaaattca 330303
>gb|DQ167400.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare mitochondrion, complete genome Length = 490669 Score = 170 bits (86), Expect = 4e-39 Identities = 212/254 (83%), Gaps = 15/254 (5%) Strand = Plus / Minus Query: 149 ccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtca 208 ||||||||||||||||||||||| || |||| ||||| ||| | ||||| ||| Sbjct: 330285 ccaaaaactcgagttccttttggatttccttcttgattaatgacaaccg--------tca 330234 Query: 209 tcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattaca 268 ||||| || ||||| ||||||| || | ||||| ||||||||||||||||||||||||| Sbjct: 330233 tcatatcgtattatcataccgttgtcacgtttgagttctttacatgtacgtacaattaca 330174 Query: 269 gctcgaattacttcgg----atctttctagaggcatttggggcaatgcgtctttgattac 324 ||||| ||||||| | |||||||||||||||||| ||||| ||| ||||||||||| Sbjct: 330173 gctcgtcttacttctgtctgatctttctagaggcattttgggcactgcttctttgattac 330114 Query: 325 agcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcg 384 |||||||||||| ||||||||| ||||||||| ||||||| ||||||||| || ||| Sbjct: 330113 agcaacaataacgtcaccaatatgagcatatcagtgattac---cagctcctaagattcg 330057 Query: 385 aatacacatcaatt 398 |||||| ||||||| Sbjct: 330056 aatacatatcaatt 330043 Score = 60.0 bits (30), Expect = 1e-05 Identities = 48/54 (88%) Strand = Plus / Minus Query: 69 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattca 122 ||||||||||||||||||| ||||||||| |||| ||| |||| || ||||||| Sbjct: 330353 ctactagtatttataatacctcaggagctcatgagactctttttgtgaaattca 330300
>dbj|BA000029.3| Oryza sativa (japonica cultivar-group) mitochondrial DNA, complete genome Length = 490520 Score = 170 bits (86), Expect = 4e-39 Identities = 212/254 (83%), Gaps = 15/254 (5%) Strand = Plus / Minus Query: 149 ccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtca 208 ||||||||||||||||||||||| || |||| ||||| ||| | ||||| ||| Sbjct: 330142 ccaaaaactcgagttccttttggatttccttcttgattaatgacaaccg--------tca 330091 Query: 209 tcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattaca 268 ||||| || ||||| ||||||| || | ||||| ||||||||||||||||||||||||| Sbjct: 330090 tcatatcgtattatcataccgttgtcacgtttgagttctttacatgtacgtacaattaca 330031 Query: 269 gctcgaattacttcgg----atctttctagaggcatttggggcaatgcgtctttgattac 324 ||||| ||||||| | |||||||||||||||||| ||||| ||| ||||||||||| Sbjct: 330030 gctcgtcttacttctgtctgatctttctagaggcattttgggcactgcttctttgattac 329971 Query: 325 agcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcg 384 |||||||||||| ||||||||| ||||||||| ||||||| ||||||||| || ||| Sbjct: 329970 agcaacaataacgtcaccaatatgagcatatcagtgattac---cagctcctaagattcg 329914 Query: 385 aatacacatcaatt 398 |||||| ||||||| Sbjct: 329913 aatacatatcaatt 329900 Score = 60.0 bits (30), Expect = 1e-05 Identities = 48/54 (88%) Strand = Plus / Minus Query: 69 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattca 122 ||||||||||||||||||| ||||||||| |||| ||| |||| || ||||||| Sbjct: 330210 ctactagtatttataatacctcaggagctcatgagactctttttgtgaaattca 330157
>gb|AC137998.2| Oryza sativa chromosome 3 BAC OSJNBa0010B01 genomic sequence, complete sequence Length = 27470 Score = 163 bits (82), Expect = 9e-37 Identities = 143/162 (88%), Gaps = 1/162 (0%) Strand = Plus / Minus Query: 82 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 141 |||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||| ||| Sbjct: 5365 taatacttcatgagcttatgaaactattttagtaaaattcaattctctcaattccttggc 5306 Query: 142 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 201 || || |||||||| | |||||| ||||| || ||||||| |||||| ||||||| ||| Sbjct: 5305 gattgcaccaaaaacgcaagttccatttggatttccttttt-atcaatgataaccgtagc 5247 Query: 202 attgtcatcatagcggattattataccgtcttcgcatttgaa 243 | |||| |||||||| |||||||||| ||||||||||||||| Sbjct: 5246 actgtcgtcatagcgtattattatactgtcttcgcatttgaa 5205
>gb|AF229187.1|AF229187 Oryza sativa subsp. japonica BAC clone nbxb0032I20, complete sequence Length = 144651 Score = 155 bits (78), Expect = 2e-34 Identities = 144/165 (87%), Gaps = 7/165 (4%) Strand = Plus / Minus Query: 238 tttgaattctttacatgtacgtacaattacagctcgaattacttcgg----atctttcta 293 ||||| |||||||||||||||||||||||||||||| ||||||| | ||||||||| Sbjct: 37711 tttgagttctttacatgtacgtacaattacagctcgtcttacttctgtctgatctttcta 37652 Query: 294 gaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagcat 353 ||||||||| ||||| ||| ||||||||||||||||||||||| ||||||||| |||||| Sbjct: 37651 gaggcattttgggcactgcttctttgattacagcaacaataacgtcaccaatatgagcat 37592 Query: 354 atcgctgattaccagcagctcctatgactcgaatacacatcaatt 398 ||| ||||||| ||||||||| || ||||||||| ||||||| Sbjct: 37591 atcagtgattac---cagctcctaagattcgaatacatatcaatt 37550
>dbj|D13105.1|RICMT09 Oryza sativa (japonica cultivar-group) mitochondrial rp114 pseudogene, clone:pMTVSCT13 Length = 645 Score = 155 bits (78), Expect = 2e-34 Identities = 210/254 (82%), Gaps = 15/254 (5%) Strand = Plus / Plus Query: 149 ccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtca 208 ||||||||||||||||||||||| || |||| ||||| ||| | ||||| ||| Sbjct: 161 ccaaaaactcgagttccttttggatttccttcttgattaatgacaaccg--------tca 212 Query: 209 tcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattaca 268 ||||| || ||||| ||||||| || | ||||| ||||||||||||||||||||||||| Sbjct: 213 tcatatcgtattatcataccgttgtcacgtttgagttctttacatgtacgtacaattaca 272 Query: 269 gctcgaattacttcgg----atctttctagaggcatttggggcaatgcgtctttgattac 324 ||||| ||||||| | |||||||||||| ||||| ||||| ||| ||||||||||| Sbjct: 273 gctcgtcttacttctgtctgatctttctagagccattttgggcactgcttctttgattac 332 Query: 325 agcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcg 384 |||||||||||| || |||||| ||||||||| ||||||| ||||||||| || ||| Sbjct: 333 agcaacaataacgtccccaatatgagcatatcagtgattac---cagctcctaagattcg 389 Query: 385 aatacacatcaatt 398 |||||| ||||||| Sbjct: 390 aatacatatcaatt 403 Score = 60.0 bits (30), Expect = 1e-05 Identities = 48/54 (88%) Strand = Plus / Plus Query: 69 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattca 122 ||||||||||||||||||| ||||||||| |||| ||| |||| || ||||||| Sbjct: 93 ctactagtatttataatacctcaggagctcatgagactctttttgtgaaattca 146
>dbj|AP005707.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0465E03 Length = 151206 Score = 153 bits (77), Expect = 9e-34 Identities = 80/81 (98%) Strand = Plus / Minus Query: 443 tgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatatt 502 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 147871 tgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatatt 147812 Query: 503 gtctttccagaaagaaaaacc 523 |||||||||||||||| |||| Sbjct: 147811 gtctttccagaaagaagaacc 147791 Score = 101 bits (51), Expect = 3e-18 Identities = 81/90 (90%), Gaps = 1/90 (1%) Strand = Plus / Minus Query: 560 tatatctctaatcgaataaattgacttcgtatggggcattttactggccgctatggagat 619 ||||| ||||| |||| |||||||||||||||||| |||||| ||||| |||||||| || Sbjct: 147753 tatatttctaaccgaagaaattgacttcgtatggg-cattttgctggcagctatggaaat 147695 Query: 620 agctgctctagctacagnttcagatactcc 649 ||||||||||||||||| ||| |||||||| Sbjct: 147694 agctgctctagctacagtttcggatactcc 147665
>dbj|AP005683.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1585_D02 Length = 103172 Score = 153 bits (77), Expect = 9e-34 Identities = 80/81 (98%) Strand = Plus / Minus Query: 443 tgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatatt 502 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 55633 tgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatatt 55574 Query: 503 gtctttccagaaagaaaaacc 523 |||||||||||||||| |||| Sbjct: 55573 gtctttccagaaagaagaacc 55553 Score = 101 bits (51), Expect = 3e-18 Identities = 81/90 (90%), Gaps = 1/90 (1%) Strand = Plus / Minus Query: 560 tatatctctaatcgaataaattgacttcgtatggggcattttactggccgctatggagat 619 ||||| ||||| |||| |||||||||||||||||| |||||| ||||| |||||||| || Sbjct: 55515 tatatttctaaccgaagaaattgacttcgtatggg-cattttgctggcagctatggaaat 55457 Query: 620 agctgctctagctacagnttcagatactcc 649 ||||||||||||||||| ||| |||||||| Sbjct: 55456 agctgctctagctacagtttcggatactcc 55427
>dbj|AP003768.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0439E07 Length = 176486 Score = 145 bits (73), Expect = 2e-31 Identities = 160/189 (84%) Strand = Plus / Minus Query: 167 tttgggttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattata 226 ||||| || |||||||||||||| ||||| | ||||||| | |||| | ||||||||| Sbjct: 33438 tttggatttcctttttgatcaatgataacgactgcattgttgttatagagtattattata 33379 Query: 227 ccgtcttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggat 286 |||| || ||||||||| || |||||||| | |||||||||| ||| ||||||| ||| Sbjct: 33378 ccgtttttgcatttgaaatccatacatgtatgcacaattacagatcgtattacttttgat 33319 Query: 287 ctttctagaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaata 346 |||||||||||||| | || || ||| ||||| ||||||||||||||||||||||||||| Sbjct: 33318 ctttctagaggcatcttggacactgcatcttttattacagcaacaataacatcaccaata 33259 Query: 347 cgagcatat 355 |||| |||| Sbjct: 33258 cgagtatat 33250
>gb|AF536225.1| Vigna angularis chloroplast S10B operon, partial sequence Length = 6550 Score = 141 bits (71), Expect = 3e-30 Identities = 179/215 (83%) Strand = Plus / Minus Query: 79 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 138 ||||||||| ||||| ||||||||||||||||| || ||||| || | |||||||||| Sbjct: 5904 ttataatacctcaggtgctaatgaaactattttagtgaaatttaactgtctcaattcccg 5845 Query: 139 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 198 ||| || |||| ||| | ||||||||||||||| || |||| ||||||||||||||| || Sbjct: 5844 ggcgattgcgcaaaagattcgagttccttttggatttccttcttgatcaattataactgc 5785 Query: 199 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 258 |||||| |||||||| | ||||||||||||| | ||| | || |||||| ||||| Sbjct: 5784 agcattatcatcatactgaattattataccgttgctacgttttagttgtttacaagtacg 5725 Query: 259 tacaattacagctcgaattacttcggatctttcta 293 |||||||||||||| || ||||| |||||||||| Sbjct: 5724 tacaattacagctctgatcacttcagatctttcta 5690 Score = 65.9 bits (33), Expect = 2e-07 Identities = 116/143 (81%), Gaps = 3/143 (2%) Strand = Plus / Minus Query: 316 tttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcc 375 ||||||||||||||||| || || |||||| ||||||||| |||||| ||| ||| Sbjct: 5667 tttgattacagcaacaacaatgtcgccaatataagcatatcgtcgattactagc---tcc 5611 Query: 376 tatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggt 435 || || |||||||||||||| || || ||||| || || || |||||||| ||| | || Sbjct: 5610 taggattcgaatacacatcagttcacgtgctccgctgttatccgctacattcaaatgagt 5551 Query: 436 ctgaggttgaatcatattatttt 458 |||||||||||||||| ||||| Sbjct: 5550 ttgaggttgaatcatatcatttt 5528
>dbj|AP003861.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1046_F10 Length = 118472 Score = 141 bits (71), Expect = 3e-30 Identities = 126/143 (88%), Gaps = 1/143 (0%) Strand = Plus / Minus Query: 101 gaaactattttggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcga 160 ||||||||||| |||||||||||||||||||||| |||| | |||||||||||||| | | Sbjct: 87867 gaaactattttagtaaaattcaattctctcaattactcgacgatcgcgccaaaaacgcaa 87808 Query: 161 gttccttttgggttgcctttttgatcaattataaccgcagcattgtcatcatagcggatt 220 ||||| ||||| || ||||||| | ||| ||| ||| ||||||||||||||||| ||| Sbjct: 87807 gttccatttggatttccttttt-actaatgatatccgttgcattgtcatcatagcgtatt 87749 Query: 221 attataccgtcttcgcatttgaa 243 ||||||||||||||||||||||| Sbjct: 87748 attataccgtcttcgcatttgaa 87726
>gb|AC093544.8| Medicago truncatula chloroplast, complete genome, complete sequence Length = 124033 Score = 139 bits (70), Expect = 1e-29 Identities = 306/382 (80%), Gaps = 7/382 (1%) Strand = Plus / Minus Query: 79 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 138 ||||||||| || || ||||||||||||||||| || ||||| || | ||||||||| Sbjct: 45042 ttataatacctcgggtgctaatgaaactattttagtgaaatttaactgtctcaattctcg 44983 Query: 139 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 198 ||| || ||| ||||| ||||||||||||||| || |||| || |||||| | |||||| Sbjct: 44982 ggctattgcggaaaaaattcgagttccttttggatttccttctttatcaatgagaaccgc 44923 Query: 199 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 258 ||||| |||||||| ||||||||||| | | ||| | ||||||||| ||||| Sbjct: 44922 cgcattatcatcatactttattattataccattactacgttttagttctttacaagtacg 44863 Query: 259 tacaattacagctcgaattacttcggatctttctagag--gcatttggggcaatgcgtct 316 |||||||||||| | || ||||| |||||||||| || | |||||| | ||| | | Sbjct: 44862 tacaattacagccctgatcacttcagatctttctaaagatgaatttggtac--tgctttt 44805 Query: 317 ttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcct 376 |||||||||||||||| || ||||||||| |||||| || |||||| ||| |||| Sbjct: 44804 ttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagc---tcct 44748 Query: 377 atgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtc 436 |||| ||||||||||||||||| || ||||| ||||| || |||||||||||| ||| Sbjct: 44747 atgattcgaatacacatcaattcgcgggctccgctattatcggctacatttaaataggtt 44688 Query: 437 tgaggttgaatcatattatttt 458 |||||||||||||||| ||||| Sbjct: 44687 tgaggttgaatcatatcatttt 44666
>gb|DQ317523.1| Glycine max cultivar PI 437654 chloroplast, complete genome Length = 152218 Score = 125 bits (63), Expect = 2e-25 Identities = 177/215 (82%) Strand = Plus / Plus Query: 79 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 138 ||||||||| || || ||||||||||||||||| || ||||| || | |||||||||| Sbjct: 79709 ttataatacctcgggtgctaatgaaactattttagtgaaatttaactgtctcaattcccg 79768 Query: 139 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 198 ||| || || | ||| | ||||||||||||||| || |||| ||||||||| | ||| || Sbjct: 79769 ggcgattgcacaaaagattcgagttccttttggatttccttcttgatcaatgacaactgc 79828 Query: 199 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 258 |||||| |||||||| | ||||||||||||| | ||||| ||||||||| ||||| Sbjct: 79829 agcattatcatcatactgaattattataccgttgctacgtttgagttctttacaagtacg 79888 Query: 259 tacaattacagctcgaattacttcggatctttcta 293 |||||||||||||| || ||||| |||||||||| Sbjct: 79889 tacaattacagctctgatcacttctgatctttcta 79923 Score = 81.8 bits (41), Expect = 3e-12 Identities = 118/143 (82%), Gaps = 3/143 (2%) Strand = Plus / Plus Query: 316 tttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcc 375 ||||||||||||||||| || ||||||||| ||||||||| |||||| ||| ||| Sbjct: 79946 tttgattacagcaacaacaatgtcaccaatataagcatatcgtcgattactagc---tcc 80002 Query: 376 tatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggt 435 || || |||||||||||||| || || ||||| ||||| || |||||||| ||| | || Sbjct: 80003 taggattcgaatacacatcagttcgcgtgctccgctattatcagctacattcaaatgagt 80062 Query: 436 ctgaggttgaatcatattatttt 458 |||||||||||||||| ||||| Sbjct: 80063 ttgaggttgaatcatatcatttt 80085
>dbj|D17510.1|PINCPTRPG Pinus thunbergii chloroplast DNA, complete sequence Length = 119707 Score = 123 bits (62), Expect = 8e-25 Identities = 119/138 (86%) Strand = Plus / Plus Query: 74 agtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaat 133 |||| |||||||||||| ||||| |||||||||||||| || |||||||||| ||||||| Sbjct: 60553 agtacttataatacttcgggagccaatgaaactattttcgtgaaattcaattgtctcaat 60612 Query: 134 tcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattata 193 |||| |||| || ||||||||||||||||||||||| || |||| |||||||| | | Sbjct: 60613 tcctgagcaaccggaccaaaaactcgagttccttttggatttccttcctgatcaatgaca 60672 Query: 194 accgcagcattgtcatca 211 || || |||||||||||| Sbjct: 60673 acggctgcattgtcatca 60690 Score = 42.1 bits (21), Expect = 2.3 Identities = 36/41 (87%) Strand = Plus / Plus Query: 371 gctcctatgactcgaatacacatcaattttcgagctccact 411 ||||||| |||||||||||||| | |||||| |||||||| Sbjct: 60847 gctcctagaactcgaatacacattatttttcgggctccact 60887
>emb|X68048.1|CHPVHISG Phaseolus vulgaris chloroplast DNA for tRNA-His gene region Length = 1698 Score = 117 bits (59), Expect = 5e-23 Identities = 176/215 (81%) Strand = Plus / Plus Query: 79 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 138 ||||||||| || || ||||||||||||||||| || ||||| || | |||||||||| Sbjct: 954 ttataatacctcgggtgctaatgaaactattttagtgaaatttaactgtctcaattcccg 1013 Query: 139 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 198 ||| || |||| ||| | ||||||||||||||| || |||| ||||||||||| ||| || Sbjct: 1014 ggcgattgcgcaaaagattcgagttccttttggatttccttcttgatcaattacaactgc 1073 Query: 199 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 258 |||||| |||||||| | ||||||||||||| | ||| | || |||||| || || Sbjct: 1074 agcattatcatcatactgaattattataccgttgctacgttttagttgtttacaagtccg 1133 Query: 259 tacaattacagctcgaattacttcggatctttcta 293 |||||||||||||| || ||||| |||||||||| Sbjct: 1134 tacaattacagctctgatcacttctgatctttcta 1168 Score = 40.1 bits (20), Expect = 9.0 Identities = 32/36 (88%) Strand = Plus / Plus Query: 423 catttaaaagggtctgaggttgaatcatattatttt 458 |||||||| | || |||||||||||||||| ||||| Sbjct: 1296 catttaaatgagtttgaggttgaatcatatcatttt 1331
>gb|AC133862.6| Medicago truncatula clone mth2-30d7, complete sequence Length = 130054 Score = 115 bits (58), Expect = 2e-22 Identities = 249/310 (80%), Gaps = 7/310 (2%) Strand = Plus / Plus Query: 151 aaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtcatc 210 ||||| ||||||||||||||| || |||| || |||||| | |||||| ||||| ||||| Sbjct: 30545 aaaaattcgagttccttttggatttccttctttatcaatgagaaccgccgcattatcatc 30604 Query: 211 atagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattacagc 270 ||| ||||||||||| | | ||| | ||||||||| ||||||||||||||||| Sbjct: 30605 atactttattattataccattactacgttttagttctttacaagtacgtacaattacagc 30664 Query: 271 tcgaattacttcggatctttctagag--gcatttggggcaatgcgtctttgattacagca 328 | || ||||| |||||||||| || | |||||| | ||| | ||||||||||||| Sbjct: 30665 cctgatcacttcagatctttctaaagatgaatttggtac--tgcttttttgattacagca 30722 Query: 329 acaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcgaata 388 |||| || ||||||||| |||||| || |||||| ||| |||||||| ||||||| Sbjct: 30723 acaacaatgtcaccaatataagcataccgtcgattactagc---tcctatgattcgaata 30779 Query: 389 cacatcaattttcgagctccactattgtctgctacatttaaaagggtctgaggttgaatc 448 |||||||||| || ||||| ||||| || |||||||||||| ||| |||||||||||| Sbjct: 30780 cacatcaattcgcgggctccgctattatcggctacatttaaataggtttgaggttgaatc 30839 Query: 449 atattatttt 458 |||| ||||| Sbjct: 30840 atatcatttt 30849
>gb|AC124957.18| Medicago truncatula clone mth2-15k14, complete sequence Length = 140624 Score = 115 bits (58), Expect = 2e-22 Identities = 249/310 (80%), Gaps = 7/310 (2%) Strand = Plus / Minus Query: 151 aaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtcatc 210 ||||| ||||||||||||||| || |||| || |||||| | |||||| ||||| ||||| Sbjct: 114958 aaaaattcgagttccttttggatttccttctttatcaatgagaaccgccgcattatcatc 114899 Query: 211 atagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattacagc 270 ||| ||||||||||| | | ||| | ||||||||| ||||||||||||||||| Sbjct: 114898 atactttattattataccattactacgttttagttctttacaagtacgtacaattacagc 114839 Query: 271 tcgaattacttcggatctttctagag--gcatttggggcaatgcgtctttgattacagca 328 | || ||||| |||||||||| || | |||||| | ||| | ||||||||||||| Sbjct: 114838 cctgatcacttcagatctttctaaagatgaatttggtac--tgcttttttgattacagca 114781 Query: 329 acaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcgaata 388 |||| || ||||||||| |||||| || |||||| ||| |||||||| ||||||| Sbjct: 114780 acaacaatgtcaccaatataagcataccgtcgattactagc---tcctatgattcgaata 114724 Query: 389 cacatcaattttcgagctccactattgtctgctacatttaaaagggtctgaggttgaatc 448 |||||||||| || ||||| ||||| || |||||||||||| ||| |||||||||||| Sbjct: 114723 cacatcaattcgcgggctccgctattatcggctacatttaaataggtttgaggttgaatc 114664 Query: 449 atattatttt 458 |||| ||||| Sbjct: 114663 atatcatttt 114654
>gb|AY228468.1| Pinus Koraiensis chloroplast, complete genome Length = 116866 Score = 115 bits (58), Expect = 2e-22 Identities = 118/138 (85%) Strand = Plus / Plus Query: 74 agtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaat 133 |||| |||||| ||||| ||||| |||||||||||||| || |||||||||| ||||||| Sbjct: 58649 agtacttataagacttcgggagccaatgaaactattttagtgaaattcaattgtctcaat 58708 Query: 134 tcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattata 193 |||| |||| || ||||||||||||||||||||||| || |||| |||||||| | | Sbjct: 58709 tcctgagcaaccggaccaaaaactcgagttccttttggatttccttcctgatcaatgaca 58768 Query: 194 accgcagcattgtcatca 211 || || |||||||||||| Sbjct: 58769 acggctgcattgtcatca 58786 Score = 42.1 bits (21), Expect = 2.3 Identities = 36/41 (87%) Strand = Plus / Plus Query: 371 gctcctatgactcgaatacacatcaattttcgagctccact 411 ||||||| |||||||||||||| | |||||| |||||||| Sbjct: 58943 gctcctagaactcgaatacacattatttttcgggctccact 58983
>gb|M60180.1|OBECPRPB O.ammophila ribosomal protein L14 and S8 (rpl14, rps8) genes, 5' end and 3' end Length = 625 Score = 97.6 bits (49), Expect = 4e-17 Identities = 82/93 (88%) Strand = Plus / Plus Query: 79 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 138 ||||||||| ||||| ||||||||||||||||| || ||| | || ||||||||||| | Sbjct: 524 ttataatacctcaggtgctaatgaaactattttagtgaaacttaactctctcaattcgtg 583 Query: 139 ggcaatcgcgccaaaaactcgagttccttttgg 171 ||||||||| ||||||||||| ||||||||||| Sbjct: 584 ggcaatcgcaccaaaaactcgggttccttttgg 616
>dbj|AB077366.1| Iris bungei plastid DNA, intron region Length = 576 Score = 93.7 bits (47), Expect = 7e-16 Identities = 59/63 (93%) Strand = Plus / Minus Query: 423 catttaaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgc 482 |||||||||||||||||||||||||||||| ||||| |||| ||| |||||||||||||| Sbjct: 568 catttaaaagggtctgaggttgaatcatatcatttttatttgaatctgttatttcaatgc 509 Query: 483 aaa 485 ||| Sbjct: 508 aaa 506 Score = 42.1 bits (21), Expect = 2.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 618 atagctgctctagctacagnttcagatactcc 649 ||||||||||| ||||||| ||| |||||||| Sbjct: 330 atagctgctctggctacagtttctgatactcc 299
>gb|AY958086.1| Zygnema circumcarinatum chloroplast, complete genome Length = 165372 Score = 91.7 bits (46), Expect = 3e-15 Identities = 106/126 (84%) Strand = Plus / Minus Query: 86 acttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggcaatc 145 |||||||||||||| ||||||||||| |||||||| || ||||||||||| ||||| Sbjct: 41481 acttcaggagctaaagaaactattttagtaaaatttaagtctctcaattctctggcaact 41422 Query: 146 gcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattg 205 | ||||||||||| |||||| |||| ||||||| ||||| || | |||||||||||| Sbjct: 41421 ggaccaaaaactcgtgttcctcttggattgccttcttgattgatgacaaccgcagcatta 41362 Query: 206 tcatca 211 |||||| Sbjct: 41361 tcatca 41356 Score = 56.0 bits (28), Expect = 2e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 383 cgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgaggt 442 ||||||||||| | ||||||||||| || ||||| |||||||||||| | ||||||| Sbjct: 41187 cgaatacacatgagctttcgagctccgctgttgtcggctacatttaaataagactgaggt 41128 Query: 443 tgaatcat 450 |||||||| Sbjct: 41127 tgaatcat 41120
>emb|X04465.1|CHMPXX Marchantia polymorpha chloroplast genome DNA Length = 121024 Score = 87.7 bits (44), Expect = 4e-14 Identities = 113/136 (83%) Strand = Plus / Plus Query: 76 tatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattc 135 ||||||||| ||||| |||||||| ||||||||||| |||||||| ||||||| ||||| Sbjct: 76250 tatttataaaacttctggagctaacgaaactattttagtaaaattagattctcttaattc 76309 Query: 136 ctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataac 195 ||||| | ||||||||||||||||||||||| || |||| ||||| ||| | ||| Sbjct: 76310 tctagcaattggaccaaaaactcgagttccttttggatttccttcttgattaataacaac 76369 Query: 196 cgcagcattgtcatca 211 || ||||| |||||| Sbjct: 76370 tgctgcattatcatca 76385 Score = 75.8 bits (38), Expect = 2e-10 Identities = 68/78 (87%) Strand = Plus / Plus Query: 373 tcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaag 432 |||||| |||||||| ||||| | |||||||||||||||||| ||||| ||||||||| Sbjct: 76544 tcctataactcgaatgcacattagttttcgagctccactattatctgcaacatttaaata 76603 Query: 433 ggtctgaggttgaatcat 450 || |||||||||||||| Sbjct: 76604 agtttgaggttgaatcat 76621 Score = 54.0 bits (27), Expect = 6e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 242 aattctttacatgtacgtacaattacagctc 272 ||||||||||| ||||||||||||||||||| Sbjct: 76416 aattctttacacgtacgtacaattacagctc 76446
>emb|AL663020.4|OSJN00220 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0049H08, complete sequence Length = 186642 Score = 85.7 bits (43), Expect = 2e-13 Identities = 49/51 (96%) Strand = Plus / Minus Query: 255 tacgtacaattacagctcgaattacttcggatctttctagaggcatttggg 305 |||||||||||||||||| |||||||||||||||||| ||||||||||||| Sbjct: 94927 tacgtacaattacagctcaaattacttcggatctttccagaggcatttggg 94877
>dbj|AP005672.1| Physcomitrella patens subsp. patens chloroplast DNA, complete genome Length = 122890 Score = 85.7 bits (43), Expect = 2e-13 Identities = 114/135 (84%), Gaps = 2/135 (1%) Strand = Plus / Plus Query: 78 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 137 |||||||||||||||| ||||| ||||||||||| |||||||| |||| | ||||| | Sbjct: 79910 tttataatacttcaggtgctaacgaaactattttagtaaaattagattcacgtaattc-t 79968 Query: 138 cg-gcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataacc 196 || |||| | ||||||||||||||||||||| || || |||| ||||| ||| ||||| Sbjct: 79969 cgtgcaacagggccaaaaactcgagttcctttaggatttccttcttgattaataataact 80028 Query: 197 gcagcattgtcatca 211 |||||||| |||||| Sbjct: 80029 gcagcattatcatca 80043 Score = 58.0 bits (29), Expect = 4e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 386 atacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgaggttga 445 |||||||| ||||| || ||||||||||| || |||||||||||| || ||||||||| Sbjct: 80215 atacacattaatttgcgcgctccactattatcagctacatttaaataagtttgaggttga 80274 Query: 446 atcat 450 ||||| Sbjct: 80275 atcat 80279
>dbj|AB087469.1| Anthoceros formosae chloroplast rpl14 mRNA for ribosomal protein L14, complete cds Length = 460 Score = 81.8 bits (41), Expect = 3e-12 Identities = 47/49 (95%) Strand = Plus / Plus Query: 382 tcgaatacacatcaattttcgagctccactattgtctgctacatttaaa 430 |||||||||||||| ||||||||||||||| |||||||||||||||||| Sbjct: 322 tcgaatacacatcagttttcgagctccactgttgtctgctacatttaaa 370 Score = 65.9 bits (33), Expect = 2e-07 Identities = 51/57 (89%) Strand = Plus / Plus Query: 244 ttctttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcat 300 ||||||||| ||||||||||||||||||| || |||||| ||| ||| ||||||||| Sbjct: 187 ttctttacaagtacgtacaattacagctctaactacttctgatttttttagaggcat 243 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 ccaaaaactcgagttccttt 168 |||||||||||||||||||| Sbjct: 92 ccaaaaactcgagttccttt 111
>dbj|AB086179.1| Anthoceros formosae chloroplast DNA, complete genome Length = 161162 Score = 81.8 bits (41), Expect = 3e-12 Identities = 47/49 (95%) Strand = Plus / Plus Query: 382 tcgaatacacatcaattttcgagctccactattgtctgctacatttaaa 430 |||||||||||||| ||||||||||||||| |||||||||||||||||| Sbjct: 100021 tcgaatacacatcagttttcgagctccactgttgtctgctacatttaaa 100069 Score = 65.9 bits (33), Expect = 2e-07 Identities = 51/57 (89%) Strand = Plus / Plus Query: 244 ttctttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcat 300 ||||||||| ||||||||||||||||||| || |||||| ||| ||| ||||||||| Sbjct: 99886 ttctttacaagtacgtacaattacagctctaactacttctgatttttttagaggcat 99942 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 ccaaaaactcgagttccttt 168 |||||||||||||||||||| Sbjct: 99791 ccaaaaactcgagttccttt 99810
>gb|M60179.1|OBECPRPA O.ammophila ribosomal protein L14 and L16 (rpl14, rpl16) genes, 3' end and 5' end Length = 542 Score = 81.8 bits (41), Expect = 3e-12 Identities = 112/135 (82%), Gaps = 3/135 (2%) Strand = Plus / Plus Query: 324 cagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactc 383 |||||||||||| ||||| ||| |||||||||| |||||| ||| ||| |||| || Sbjct: 1 cagcaacaataatgtcaccgatatgagcatatcgacgattactagc---tccgatgattc 57 Query: 384 gaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgaggtt 443 |||||||||| |||| |||||| ||||| || || || ||||| ||| |||| ||||||| Sbjct: 58 gaatacacattaattctcgagccccactgttatccgcgacattcaaacgggtttgaggtt 117 Query: 444 gaatcatattatttt 458 ||||||||| ||||| Sbjct: 118 gaatcatatcatttt 132
>gb|AY660566.1| Huperzia lucidula chloroplast, complete genome Length = 154373 Score = 79.8 bits (40), Expect = 1e-11 Identities = 49/52 (94%) Strand = Plus / Minus Query: 78 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctct 129 ||||||||||||||||||| |||||||||||||| |||||||| |||||||| Sbjct: 5586 tttataatacttcaggagccaatgaaactattttagtaaaattgaattctct 5535 Score = 56.0 bits (28), Expect = 2e-04 Identities = 61/72 (84%) Strand = Plus / Minus Query: 382 tcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgagg 441 |||||||||||| |||| ||||||||| |||||||||||||| ||| || ||||| Sbjct: 5285 tcgaatacacattggttttttagctccactgttgtctgctacattcaaatacgtttgagg 5226 Query: 442 ttgaatcatatt 453 |||||||||||| Sbjct: 5225 ttgaatcatatt 5214
>emb|AL662985.3|OSJN00189 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0095H06, complete sequence Length = 126447 Score = 77.8 bits (39), Expect = 4e-11 Identities = 73/84 (86%), Gaps = 4/84 (4%) Strand = Plus / Plus Query: 246 ctttacatgtacgtacaattacagctcgaattact----tcggatctttctagaggcatt 301 |||||||||||||||||||||||||||| ||||| || |||||||||||||||||| Sbjct: 89363 ctttacatgtacgtacaattacagctcgtcttacttctgtctgatctttctagaggcatt 89422 Query: 302 tggggcaatgcgtctttgattaca 325 | ||||| ||| |||||| ||||| Sbjct: 89423 ttgggcactgcttctttggttaca 89446
>dbj|AP004038.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1004_H01 Length = 121377 Score = 75.8 bits (38), Expect = 2e-10 Identities = 68/78 (87%) Strand = Plus / Plus Query: 133 ttcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattat 192 ||||||||| |||| ||||||||| |||||||||||||| || | ||||||| |||| || Sbjct: 117502 ttcctcggcgatcgtgccaaaaacgcgagttccttttggatttcttttttgaccaatgat 117561 Query: 193 aaccgcagcattgtcatc 210 ||||| ||||||||||| Sbjct: 117562 aaccgttgcattgtcatc 117579
>dbj|AP004638.1| Psilotum nudum chloroplast DNA, complete genome Length = 138829 Score = 73.8 bits (37), Expect = 6e-10 Identities = 61/69 (88%) Strand = Plus / Plus Query: 382 tcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgagg 441 |||||||||||||||||||||||||||||| ||||||| ||| |||||| | ||||| Sbjct: 79713 tcgaatacacatcaattttcgagctccactgttgtctgttacttttaaataactttgagg 79772 Query: 442 ttgaatcat 450 ||||||||| Sbjct: 79773 ttgaatcat 79781 Score = 44.1 bits (22), Expect = 0.57 Identities = 31/34 (91%) Strand = Plus / Plus Query: 87 cttcaggagctaatgaaactattttggtaaaatt 120 ||||||||||||| || |||||||| |||||||| Sbjct: 79421 cttcaggagctaaagatactattttagtaaaatt 79454
>dbj|AB077439.1| Sophora alopecuroides plastid DNA, intron region Length = 569 Score = 71.9 bits (36), Expect = 3e-09 Identities = 36/36 (100%) Strand = Plus / Minus Query: 423 catttaaaagggtctgaggttgaatcatattatttt 458 |||||||||||||||||||||||||||||||||||| Sbjct: 561 catttaaaagggtctgaggttgaatcatattatttt 526
>dbj|AP003418.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0506A10 Length = 145265 Score = 69.9 bits (35), Expect = 1e-08 Identities = 101/124 (81%), Gaps = 8/124 (6%) Strand = Plus / Minus Query: 149 ccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtca 208 ||||||||||||||||||||||| || |||| ||||| ||| | ||||| ||| Sbjct: 127299 ccaaaaactcgagttccttttggatttccttcttgattaatgacaaccg--------tca 127248 Query: 209 tcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattaca 268 ||||| || ||||| ||||||| || | ||||| |||||||||||||||||||||||| Sbjct: 127247 tcatatcgtattatcataccgttgtcacgtttgagttctttacatgtacgtacaattact 127188 Query: 269 gctc 272 |||| Sbjct: 127187 gctc 127184 Score = 50.1 bits (25), Expect = 0.009 Identities = 34/37 (91%) Strand = Plus / Minus Query: 149 ccaaaaactcgagttccttttgggttgcctttttgat 185 ||||||||||||||||||||||| || |||| ||||| Sbjct: 126033 ccaaaaactcgagttccttttggatttccttcttgat 125997 Score = 50.1 bits (25), Expect = 0.009 Identities = 34/37 (91%) Strand = Plus / Minus Query: 149 ccaaaaactcgagttccttttgggttgcctttttgat 185 ||||||||||||||||||||||| || |||| ||||| Sbjct: 121959 ccaaaaactcgagttccttttggatttccttcttgat 121923
>gb|DQ069422.1| Ginkgo biloba ribosomal protein L14 (rpl14) gene, partial cds; chloroplast Length = 366 Score = 67.9 bits (34), Expect = 4e-08 Identities = 108/130 (83%), Gaps = 2/130 (1%) Strand = Plus / Minus Query: 82 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcg-g 140 ||||||||| ||||| |||| ||||||||| || ||||| |||| ||||||||| ||| | Sbjct: 366 taatacttcgggagccaatggaactatttttgtgaaattaaattgtctcaattc-tcgag 308 Query: 141 caatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcag 200 ||| | |||||||||||||||||||| || || |||| |||||||| | ||| || | Sbjct: 307 caactgaaccaaaaactcgagttcctttcggatttccttcctgatcaatgacaactgctg 248 Query: 201 cattgtcatc 210 |||||||||| Sbjct: 247 cattgtcatc 238
>gb|M80799.1|VIRCPRPL Vigna unguiculata chloroplast ribosomal protein (L16 and L14) genes, 3' and 5' end respectively Length = 1268 Score = 65.9 bits (33), Expect = 2e-07 Identities = 116/143 (81%), Gaps = 3/143 (2%) Strand = Plus / Minus Query: 316 tttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcc 375 ||||||||||||||||| || || |||||| ||||||||| |||||| ||| ||| Sbjct: 1258 tttgattacagcaacaacaatgtcgccaatataagcatatcgtcgattactagc---tcc 1202 Query: 376 tatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggt 435 || || |||||||||||||| || || ||||| || || || |||||||| ||| | || Sbjct: 1201 taggattcgaatacacatcagttcacgtgctccgctgttatccgctacattcaaatgagt 1142 Query: 436 ctgaggttgaatcatattatttt 458 |||||||||||||||| ||||| Sbjct: 1141 ttgaggttgaatcatatcatttt 1119
>dbj|AB077337.1| Saussurea involucrata plastid DNA, intron region Length = 541 Score = 63.9 bits (32), Expect = 6e-07 Identities = 35/36 (97%) Strand = Plus / Minus Query: 423 catttaaaagggtctgaggttgaatcatattatttt 458 |||||||||||||||||||||||||||||| ||||| Sbjct: 533 catttaaaagggtctgaggttgaatcatatgatttt 498
>emb|X03834.1|CHSOL16 Spirodela oligorhiza chloroplast gene for ribosomal protein L16 Length = 2064 Score = 63.9 bits (32), Expect = 6e-07 Identities = 38/40 (95%) Strand = Plus / Minus Query: 419 gctacatttaaaagggtctgaggttgaatcatattatttt 458 |||||||| ||||||||||||||||||||||||| ||||| Sbjct: 2049 gctacattcaaaagggtctgaggttgaatcatatcatttt 2010
>gb|DQ396875.1| Scenedesmus obliquus strain UTEX 393 chloroplast, complete genome Length = 161452 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 380 actcgaatacacatcaattttcgagctccactattgtctgctacatttaaa 430 |||||||||||||| ||||| ||||| |||||||| || |||||||||||| Sbjct: 140455 actcgaatacacattaatttgcgagcaccactattatcagctacatttaaa 140505 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Plus Query: 86 acttcaggagctaatgaaactattttggtaaaatt 120 |||||||||||||| ||||| ||||| |||||||| Sbjct: 140167 acttcaggagctaaagaaacaatttttgtaaaatt 140201
>dbj|AP004159.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1175_B01 Length = 96191 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Minus Query: 114 taaaattcaattctctcaattcctcggcaatcgcgccaaaaac 156 ||||||||||| ||||| |||||||||| |||||||||||||| Sbjct: 20850 taaaattcaatactctcgattcctcggcgatcgcgccaaaaac 20808
>gb|DQ291132.1| Oltmannsiellopsis viridis chloroplast, complete genome Length = 151933 Score = 58.0 bits (29), Expect = 4e-05 Identities = 59/69 (85%) Strand = Plus / Minus Query: 386 atacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgaggttga 445 |||||||| |||||||| ||||||||||| ||||| || |||| | || ||||||||| Sbjct: 16479 atacacattaattttcgtgctccactattatctgcgacgtttacatatgtttgaggttga 16420 Query: 446 atcatatta 454 ||||||||| Sbjct: 16419 atcatatta 16411
>dbj|AB077335.1| Allium altaicum plastid DNA, intron region Length = 551 Score = 58.0 bits (29), Expect = 4e-05 Identities = 29/29 (100%) Strand = Plus / Minus Query: 423 catttaaaagggtctgaggttgaatcata 451 ||||||||||||||||||||||||||||| Sbjct: 543 catttaaaagggtctgaggttgaatcata 515
>gb|AY178864.1| Adiantum capillus-veneris chloroplast, complete genome Length = 150568 Score = 56.0 bits (28), Expect = 2e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 383 cgaatacacatcaattttcgagctccactattgtctgctacatttaaa 430 |||||||||||||| || |||||||| ||||| |||||||||| |||| Sbjct: 76668 cgaatacacatcaacttgcgagctccgctattatctgctacatctaaa 76715
>tpg|BK000554.2| TPA: TPA_inf: Chlamydomonas reinhardtii chloroplast, complete genome Length = 203828 Score = 56.0 bits (28), Expect = 2e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 383 cgaatacacatcaattttcgagctccactattgtctgctacatttaaa 430 ||||||||||| |||| ||||| |||||||| ||||||||||||||| Sbjct: 28989 cgaatacacattaattcacgagcaccactattatctgctacatttaaa 28942 Score = 40.1 bits (20), Expect = 9.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 246 ctttacatgtacgtacaattacagctcg 273 |||||| |||||||||||| |||||||| Sbjct: 29123 ctttacgtgtacgtacaataacagctcg 29096
>dbj|AB077365.1| Iris dichotoma plastid DNA, intron region Length = 566 Score = 56.0 bits (28), Expect = 2e-04 Identities = 28/28 (100%) Strand = Plus / Minus Query: 423 catttaaaagggtctgaggttgaatcat 450 |||||||||||||||||||||||||||| Sbjct: 558 catttaaaagggtctgaggttgaatcat 531 Score = 44.1 bits (22), Expect = 0.57 Identities = 36/41 (87%) Strand = Plus / Minus Query: 609 gctatggagatagctgctctagctacagnttcagatactcc 649 ||||| || ||||||||||| ||||||| ||| |||||||| Sbjct: 348 gctattgaaatagctgctctggctacagtttctgatactcc 308
>emb|X14062.1|CHCRL14 Chlamydomonas reinhardtii plasti gene for ribosomal protein L14 Length = 988 Score = 56.0 bits (28), Expect = 2e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 383 cgaatacacatcaattttcgagctccactattgtctgctacatttaaa 430 ||||||||||| |||| ||||| |||||||| ||||||||||||||| Sbjct: 588 cgaatacacattaattcacgagcaccactattatctgctacatttaaa 541 Score = 40.1 bits (20), Expect = 9.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 246 ctttacatgtacgtacaattacagctcg 273 |||||| |||||||||||| |||||||| Sbjct: 722 ctttacgtgtacgtacaataacagctcg 695
>gb|M30487.1|CPACYRP Cyanophora paradoxa ribosomal protein l22 (rpl22) gene, partial cds; ribosomal protein s3 (rps3), ribosomal protein l16 (rpl16), ribosomal protein l7 (rpl7), ribosomal protein l14 (rpl14), ribosomal protein l5 (rpl5), ribosomal protein s8 (rps8), ribosomal protein l6 (rpl6), ribosomal protein l18 (rpl18), ribosomal protein s5 (rps5), and ribosomal protein secY (secY) genes, complete cds; and ORF gene, partial cds Length = 6468 Score = 54.0 bits (27), Expect = 6e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 380 actcgaatacacatcaattttcgagctccactatt 414 |||||||||||||| ||||| |||||||||||||| Sbjct: 1744 actcgaatacacattaatttacgagctccactatt 1710 Score = 42.1 bits (21), Expect = 2.3 Identities = 36/41 (87%) Strand = Plus / Minus Query: 80 tataatacttcaggagctaatgaaactattttggtaaaatt 120 ||||||||||| |||||||| |||| ||||| |||||||| Sbjct: 2041 tataatacttccggagctaaagaaataatttttgtaaaatt 2001 Score = 42.1 bits (21), Expect = 2.3 Identities = 30/33 (90%) Strand = Plus / Minus Query: 322 tacagcaacaataacatcaccaatacgagcata 354 |||||| ||||| ||||||||||| |||||||| Sbjct: 1799 tacagcgacaattacatcaccaattcgagcata 1767
>emb|AL928780.5|CNS08CCA Oryza sativa chromosome 12, . BAC OSJNBa0018C20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 137492 Score = 54.0 bits (27), Expect = 6e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 105 ctattttggtaaaattcaattctctcaattc 135 ||||||| ||||||||||||||||||||||| Sbjct: 45211 ctattttagtaaaattcaattctctcaattc 45181
>gb|U30821.1|CPU30821 Cyanophora paradoxa cyanelle, complete genome Length = 135599 Score = 54.0 bits (27), Expect = 6e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 380 actcgaatacacatcaattttcgagctccactatt 414 |||||||||||||| ||||| |||||||||||||| Sbjct: 52478 actcgaatacacattaatttacgagctccactatt 52512 Score = 42.1 bits (21), Expect = 2.3 Identities = 30/33 (90%) Strand = Plus / Plus Query: 322 tacagcaacaataacatcaccaatacgagcata 354 |||||| ||||| ||||||||||| |||||||| Sbjct: 52423 tacagcgacaattacatcaccaattcgagcata 52455 Score = 42.1 bits (21), Expect = 2.3 Identities = 36/41 (87%) Strand = Plus / Plus Query: 80 tataatacttcaggagctaatgaaactattttggtaaaatt 120 ||||||||||| |||||||| |||| ||||| |||||||| Sbjct: 52181 tataatacttccggagctaaagaaataatttttgtaaaatt 52221
>gb|DQ069419.1| Typha latifolia ribosomal protein L16 (rpl16) gene, partial cds; chloroplast Length = 408 Score = 52.0 bits (26), Expect = 0.002 Identities = 31/33 (93%) Strand = Plus / Minus Query: 617 gatagctgctctagctacagnttcagatactcc 649 |||||||||||||||||||| ||| |||||||| Sbjct: 357 gatagctgctctagctacagtttctgatactcc 325
>gb|AF050665.1|AF050665 Spirogyra maxima tRNA-Ile gene, complete sequence; and ribosomal protein L23 (rpl23), ribosomal protein L2 (rpl2), ribosomal protein S19 (rps19), ribosomal protein L22 (rpl22), ribosomal protein S3 (rps3), ribosomal protein L16 (rpl16), ribosomal protein L14 (rpl14), ribosomal protein S8 (rps8), initiation factor A (infA), ribosomal protein L36 (rpl36), ribosomal protein S11 (rps11), and RNA polymerase alpha subunit (rpoA) genes, complete cds, chloroplast genes for chloroplast products Length = 8794 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 86 acttcaggagctaatgaaactattttggtaaaattcaattctctcaattc 135 |||||||||||||| || ||||| || |||||||| |||||||| ||||| Sbjct: 5584 acttcaggagctaaagatactatcttagtaaaatttaattctcttaattc 5535 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 383 cgaatacacatcaattttcgagctccact 411 ||||||||||| ||||| ||||||||||| Sbjct: 5290 cgaatacacattaatttacgagctccact 5262
>gb|AC135498.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0010M24, complete sequence Length = 164853 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 594 ggcattttactggccgctatggagatagctgctctagctac 634 |||||||| |||| |||||||| ||||||||||||||||| Sbjct: 75828 ggcattttggtggcagctatggaaatagctgctctagctac 75788
>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence Length = 6365727 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 386 atacacatcaattttcgagctccactattgtctgctacatt 426 |||||||||||||| ||||| || ||||||||||| ||||| Sbjct: 879333 atacacatcaatttacgagcgccgctattgtctgcgacatt 879293
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Plus Query: 594 ggcattttactggccgctatggagatagctgctctagctac 634 |||||||| |||| |||||||| ||||||||||||||||| Sbjct: 9208192 ggcattttggtggcagctatggaaatagctgctctagctac 9208232 Score = 48.1 bits (24), Expect = 0.037 Identities = 36/40 (90%) Strand = Plus / Minus Query: 330 caataacatcaccaatacgagcatatcgctgattaccagc 369 ||||||| ||||||||| ||||||||| ||||||||||| Sbjct: 11796144 caataacgtcaccaatatgagcatatcagtgattaccagc 11796105
>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome Length = 6413771 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Plus Query: 386 atacacatcaattttcgagctccactattgtctgctacatt 426 |||||||||||||| ||||| || ||||||||||| ||||| Sbjct: 5047012 atacacatcaatttacgagcgccgctattgtctgcgacatt 5047052
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Plus Query: 594 ggcattttactggccgctatggagatagctgctctagctac 634 |||||||| |||| |||||||| ||||||||||||||||| Sbjct: 9279889 ggcattttggtggcagctatggaaatagctgctctagctac 9279929 Score = 48.1 bits (24), Expect = 0.037 Identities = 36/40 (90%) Strand = Plus / Minus Query: 330 caataacatcaccaatacgagcatatcgctgattaccagc 369 ||||||| ||||||||| ||||||||| ||||||||||| Sbjct: 11874555 caataacgtcaccaatatgagcatatcagtgattaccagc 11874516
>gb|AY958085.1| Staurastrum punctulatum chloroplast, complete genome Length = 157089 Score = 48.1 bits (24), Expect = 0.037 Identities = 45/52 (86%) Strand = Plus / Minus Query: 399 ttcgagctccactattgtctgctacatttaaaagggtctgaggttgaatcat 450 |||||||||||||||| || |||||||||||| | |||||||||||||| Sbjct: 94493 ttcgagctccactattatcggctacatttaaataagattgaggttgaatcat 94442
>gb|AC135558.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0007C02, complete sequence Length = 148265 Score = 48.1 bits (24), Expect = 0.037 Identities = 36/40 (90%) Strand = Plus / Plus Query: 330 caataacatcaccaatacgagcatatcgctgattaccagc 369 ||||||| ||||||||| ||||||||| ||||||||||| Sbjct: 98741 caataacgtcaccaatatgagcatatcagtgattaccagc 98780
>dbj|AB077333.1| Ferula feruloides plastid DNA, intron region Length = 531 Score = 48.1 bits (24), Expect = 0.037 Identities = 24/24 (100%) Strand = Plus / Minus Query: 423 catttaaaagggtctgaggttgaa 446 |||||||||||||||||||||||| Sbjct: 523 catttaaaagggtctgaggttgaa 500
>ref|NM_128441.3| Arabidopsis thaliana structural constituent of ribosome AT2G28820 mRNA, complete cds Length = 1156 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Minus Query: 320 attacagcaacaataacatcaccaatacgagcata 354 ||||| ||||||| ||||||||||||| ||||||| Sbjct: 999 attacggcaacaacaacatcaccaatatgagcata 965
>emb|AL359081.10| Human DNA sequence from clone RP11-541F9 on chromosome 1, complete sequence Length = 109288 Score = 46.1 bits (23), Expect = 0.15 Identities = 26/27 (96%) Strand = Plus / Minus Query: 99 atgaaactattttggtaaaattcaatt 125 |||||||||||||||||| |||||||| Sbjct: 91500 atgaaactattttggtaacattcaatt 91474
>gb|AC005727.3| Arabidopsis thaliana chromosome 2 clone F8N16 map mi54, complete sequence Length = 107097 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Plus Query: 320 attacagcaacaataacatcaccaatacgagcata 354 ||||| ||||||| ||||||||||||| ||||||| Sbjct: 38089 attacggcaacaacaacatcaccaatatgagcata 38123
>gb|AY219111.2| Arabidopsis thaliana hypothetical protein (At2g28820/F8N16.11) mRNA, complete cds Length = 1179 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Minus Query: 320 attacagcaacaataacatcaccaatacgagcata 354 ||||| ||||||| ||||||||||||| ||||||| Sbjct: 1002 attacggcaacaacaacatcaccaatatgagcata 968
>dbj|AP000606.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MTO24 Length = 82360 Score = 46.1 bits (23), Expect = 0.15 Identities = 26/27 (96%) Strand = Plus / Minus Query: 449 atattattttgatttcaatttgttatt 475 |||||||||||||||||| |||||||| Sbjct: 13778 atattattttgatttcaaattgttatt 13752
>dbj|AB028608.1| Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K20I9 Length = 43500 Score = 46.1 bits (23), Expect = 0.15 Identities = 26/27 (96%) Strand = Plus / Plus Query: 84 atacttcaggagctaatgaaactattt 110 |||| |||||||||||||||||||||| Sbjct: 22874 atacctcaggagctaatgaaactattt 22900
>gb|AC157473.1| Medicago truncatula chromosome 7 BAC clone mte1-11e4, complete sequence Length = 125310 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Minus Query: 424 atttaaaagggtctgaggttgaa 446 ||||||||||||||||||||||| Sbjct: 65424 atttaaaagggtctgaggttgaa 65402
>gb|AC132335.3| Mus musculus BAC clone RP24-230C24 from chromosome 10, complete sequence Length = 180642 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Plus Query: 485 aaggatgaaagaaatattgtctttcc 510 |||||||||||||||||| ||||||| Sbjct: 116209 aaggatgaaagaaatattttctttcc 116234
>dbj|AB025638.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MWF20 Length = 91193 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 451 attattttgatttcaatttgtt 472 |||||||||||||||||||||| Sbjct: 90746 attattttgatttcaatttgtt 90725
>dbj|AB077440.1| Incarvillea potaninii plastid DNA, intron region Length = 536 Score = 44.1 bits (22), Expect = 0.57 Identities = 29/30 (96%), Gaps = 1/30 (3%) Strand = Plus / Minus Query: 423 catttaaaagggtctgaggttgaatcatat 452 |||||||||||| ||||||||||||||||| Sbjct: 528 catttaaaaggg-ctgaggttgaatcatat 500
>dbj|AB077334.1| Zygophyllum pterocarpum plastid DNA, intron region Length = 553 Score = 44.1 bits (22), Expect = 0.57 Identities = 29/30 (96%), Gaps = 1/30 (3%) Strand = Plus / Minus Query: 423 catttaaaagggtctgaggttgaatcatat 452 |||||||||||| ||||||||||||||||| Sbjct: 545 catttaaaaggg-ctgaggttgaatcatat 517
>gb|AC166165.3| Mus musculus BAC clone RP23-381I17 from chromosome 10, complete sequence Length = 217425 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Plus Query: 485 aaggatgaaagaaatattgtctttcc 510 |||||||||||||||||| ||||||| Sbjct: 184750 aaggatgaaagaaatattttctttcc 184775
>gb|CP000109.1| Thiomicrospira crunogena XCL-2, complete genome Length = 2427734 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 164 ccttttgggttgcctttttga 184 ||||||||||||||||||||| Sbjct: 1617545 ccttttgggttgcctttttga 1617565 Score = 42.1 bits (21), Expect = 2.3 Identities = 30/33 (90%) Strand = Plus / Minus Query: 79 ttataatacttcaggagctaatgaaactatttt 111 |||||| ||||||||||||| |||||| ||||| Sbjct: 352059 ttataaaacttcaggagctagtgaaacgatttt 352027
>gb|DQ069416.1| Ginkgo biloba ribosomal protein L16 (rpl16) gene, partial cds; chloroplast Length = 414 Score = 42.1 bits (21), Expect = 2.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 618 atagctgctctagctacagnttcagatactcc 649 ||||||||||||||||||| || |||||||| Sbjct: 356 atagctgctctagctacagtctctgatactcc 325
>emb|CT009479.4| M.truncatula DNA sequence from clone MTH2-164E3 on chromosome 3, complete sequence Length = 133351 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 474 tttcaatgcaaaaggatgaaagaaa 498 ||||||| ||||||||||||||||| Sbjct: 58265 tttcaatacaaaaggatgaaagaaa 58241
>emb|CR753838.10| Zebrafish DNA sequence from clone DKEY-189H5 in linkage group 5, complete sequence Length = 188660 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 99 atgaaactattttggtaaaat 119 ||||||||||||||||||||| Sbjct: 13532 atgaaactattttggtaaaat 13552
>emb|AL606489.26| Human DNA sequence from clone RP11-739N20 on chromosome 1 Contains the 5' end of the gene for phosphoinositol 3-phosphate-binding protein-3 (PEPP3), two novel genes, the PPP1R15B gene for protein phosphatase 1, regulatory (inhibitor) subunit 15B, the PIK3C2B gene for phosphoinositide-3-kinase, class 2, beta polypeptide, a small nuclear ribonucleoprotein polypeptide F (SNRPF) pseudogene and three CpG islands, complete sequence Length = 167079 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 502 tgtctttccagaaagaaaaac 522 ||||||||||||||||||||| Sbjct: 87284 tgtctttccagaaagaaaaac 87304
>ref|XM_503361.1| Yarrowia lipolytica CLIB122, YALI0E00154g predicted mRNA Length = 2382 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 323 acagcaacaataacatcacca 343 ||||||||||||||||||||| Sbjct: 263 acagcaacaataacatcacca 283
>emb|AL359821.11| Human DNA sequence from clone RP11-175G14 on chromosome 1 Contains part of the NEGR1 gene for neuronal growth regulator 1 and part of a novel gene, complete sequence Length = 117951 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 491 gaaagaaatattgtctttccagaaa 515 |||||||||||||||||| |||||| Sbjct: 43956 gaaagaaatattgtctttacagaaa 43980
>emb|AL355355.25| Human DNA sequence from clone RP11-730A19 on chromosome 10 Contains the 5' end of a novel gene (DKFZP761F241) (FLJ20925 FLJ38473), a ribosomal protein L5 (RPL5) pseudogene, the OPTN gene for optineurin, a small nuclear ribonucleoprotein polypeptide G (SNRPG) pseudogene, a pseudogene similar to part of COX10 homolog, cytochrome c oxidase assembly protein heme A: farnesyltransferase (yeast) (COX10), a novel pseudogene (FLJ10648 KIAA1525), a ribosomal protein L36A (RPL36A) pseudogene, the 5' end of the MCM10 gene for MCM10 minichromosome maintenance deficient 10 (S. cerevisiae), a pseudogene similar to part of chromodomain protein Y chromosome 1 (CDY1) and two CpG islands, complete sequence Length = 196203 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 460 atttcaatttgttatttcaat 480 ||||||||||||||||||||| Sbjct: 148025 atttcaatttgttatttcaat 148045
>emb|AL122003.17|HSJ659I19 Human DNA sequence from clone RP4-659I19 on chromosome 1q42.11-42.3 Contains a chromosome 9 open reading frame 78 (C9orf78) pseudogene, a novel gene (MGC13186), the 3' end of a novel gene (FLJ11383) and a CpG island, complete sequence Length = 155065 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 98 aatgaaactattttggtaaaa 118 ||||||||||||||||||||| Sbjct: 66463 aatgaaactattttggtaaaa 66483
>emb|AL162752.2|NMA1Z2491 Neisseria meningitidis serogroup A strain Z2491 complete genome; segment 1/7 Length = 340806 Score = 42.1 bits (21), Expect = 2.3 Identities = 30/33 (90%) Strand = Plus / Plus Query: 79 ttataatacttcaggagctaatgaaactatttt 111 ||||||||||||||| || |||||||| ||||| Sbjct: 109779 ttataatacttcaggtgccaatgaaacgatttt 109811
>gb|AC084817.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0419C04, complete sequence Length = 136713 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 461 tttcaatttgttatttcaatgcaaa 485 ||||||||||| ||||||||||||| Sbjct: 83648 tttcaatttgtaatttcaatgcaaa 83672
>gb|AY835431.1| Pseudendoclonium akinetum chloroplast, complete genome Length = 195867 Score = 42.1 bits (21), Expect = 2.3 Identities = 57/69 (82%) Strand = Plus / Minus Query: 383 cgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgaggt 442 ||||| |||||||||||| || || ||||| || ||||||||||||| || |||||| Sbjct: 31433 cgaatgcacatcaatttttttgcaccgctattatcagctacatttaaaatagtttgaggt 31374 Query: 443 tgaatcata 451 |||||||| Sbjct: 31373 cgaatcata 31365
>gb|AC025821.7| Homo sapiens BAC clone RP11-472F4 from 4, complete sequence Length = 178378 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 484 aaaggatgaaagaaatattgt 504 ||||||||||||||||||||| Sbjct: 10896 aaaggatgaaagaaatattgt 10876
>dbj|AK034773.1| Mus musculus 12 days embryo embryonic body between diaphragm region and neck cDNA, RIKEN full-length enriched library, clone:9430035O09 product:RAD17 homolog (S. pombe), full insert sequence Length = 2615 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 452 ttattttgatttcaatttgtt 472 ||||||||||||||||||||| Sbjct: 1994 ttattttgatttcaatttgtt 2014
>gb|AE002098.2| Neisseria meningitidis MC58, complete genome Length = 2272360 Score = 42.1 bits (21), Expect = 2.3 Identities = 30/33 (90%) Strand = Plus / Minus Query: 79 ttataatacttcaggagctaatgaaactatttt 111 ||||||||||||||| || |||||||| ||||| Sbjct: 156967 ttataatacttcaggtgccaatgaaacgatttt 156935 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 453 tattttgatttcaatttgttattt 476 ||||||||||| |||||||||||| Sbjct: 1406237 tattttgattttaatttgttattt 1406214
>gb|AC109358.3| Homo sapiens BAC clone RP11-648D16 from 2, complete sequence Length = 49153 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 107 attttggtaaaattcaattct 127 ||||||||||||||||||||| Sbjct: 27739 attttggtaaaattcaattct 27719
>gb|AC073885.5| Homo sapiens BAC clone RP11-70L16 from 2, complete sequence Length = 120379 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 114 taaaattcaattctctcaatt 134 ||||||||||||||||||||| Sbjct: 93691 taaaattcaattctctcaatt 93671
>gb|AF283525.1|AF283519S7 Homo sapiens FIP2 gene, exons 11, 12 and 13 Length = 5047 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 460 atttcaatttgttatttcaat 480 ||||||||||||||||||||| Sbjct: 151 atttcaatttgttatttcaat 171
>dbj|AK120872.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023026M09, full insert sequence Length = 5675 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 461 tttcaatttgttatttcaatgcaaa 485 ||||||||||| ||||||||||||| Sbjct: 2487 tttcaatttgtaatttcaatgcaaa 2511
>gb|AE004969.1| Neisseria gonorrhoeae FA 1090, complete genome Length = 2153922 Score = 42.1 bits (21), Expect = 2.3 Identities = 30/33 (90%) Strand = Plus / Plus Query: 79 ttataatacttcaggagctaatgaaactatttt 111 ||||||||||||||| || |||||||| ||||| Sbjct: 1801391 ttataatacttcaggtgccaatgaaacgatttt 1801423
>emb|BX322606.6| Zebrafish DNA sequence from clone DKEY-40F12, complete sequence Length = 240928 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 99 atgaaactattttggtaaaat 119 ||||||||||||||||||||| Sbjct: 106739 atgaaactattttggtaaaat 106759
>gb|U38804.1|PPU38804 Porphyra purpurea chloroplast, complete genome Length = 191028 Score = 42.1 bits (21), Expect = 2.3 Identities = 36/41 (87%) Strand = Plus / Plus Query: 383 cgaatacacatcaattttcgagctccactattgtctgctac 423 ||||||||||| | ||||| ||| |||||||| |||||||| Sbjct: 100999 cgaatacacattatttttctagcgccactattatctgctac 101039
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica Length = 4224103 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 323 acagcaacaataacatcacca 343 ||||||||||||||||||||| Sbjct: 6095 acagcaacaataacatcacca 6075
>gb|AC165159.2| Mus musculus BAC clone RP23-234N1 from chromosome 13, complete sequence Length = 215158 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 452 ttattttgatttcaatttgtt 472 ||||||||||||||||||||| Sbjct: 79695 ttattttgatttcaatttgtt 79675
>ref|XM_639569.1| Dictyostelium discoideum histidine kinase (DDB0185039), partial mRNA Length = 5211 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 cagcaacaataacatcacca 343 |||||||||||||||||||| Sbjct: 1427 cagcaacaataacatcacca 1446
>ref|XM_639498.1| Dictyostelium discoideum histidine kinase DhkI (DDB0217151), partial mRNA Length = 5211 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 cagcaacaataacatcacca 343 |||||||||||||||||||| Sbjct: 1427 cagcaacaataacatcacca 1446
>ref|XM_634860.1| Dictyostelium discoideum hypothetical protein (DDB0186277), partial mRNA Length = 4602 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 453 tattttgatttcaatttgttattt 476 ||||||||||||||||| |||||| Sbjct: 413 tattttgatttcaattttttattt 390
>gb|AC167973.4| Mus musculus BAC clone RP23-453B4 from chromosome 9, complete sequence Length = 182190 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 504 tctttccagaaagaaaaacc 523 |||||||||||||||||||| Sbjct: 127972 tctttccagaaagaaaaacc 127953
>gb|AC153856.23| Mus musculus 10 BAC RP23-468J15 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 188027 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 tactagtatttataatactt 89 |||||||||||||||||||| Sbjct: 140243 tactagtatttataatactt 140224
>gb|AY681321.1| Agelena orientalis toxin-like structure Agel_24 precursor, mRNA, complete cds Length = 378 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 454 attttgatttcaatttgtta 473 |||||||||||||||||||| Sbjct: 245 attttgatttcaatttgtta 264
>gb|CP000262.1| Streptococcus pyogenes MGAS10750, complete genome Length = 1937111 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 314 tctttgattacagcaacaat 333 |||||||||||||||||||| Sbjct: 129128 tctttgattacagcaacaat 129147
>gb|DQ415920.1| Cleome spinosa clone BAC Cs3, complete sequence Length = 141360 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 411 tattgtctgctacatttaaa 430 |||||||||||||||||||| Sbjct: 112737 tattgtctgctacatttaaa 112756
>emb|CT025560.9| Mouse DNA sequence from clone RP23-432N22 on chromosome 16, complete sequence Length = 212903 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 416 tctgctacatttaaaagggt 435 |||||||||||||||||||| Sbjct: 68129 tctgctacatttaaaagggt 68148
>emb|CR450788.7| Zebrafish DNA sequence from clone DKEY-15P23 in linkage group 12, complete sequence Length = 115480 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 gtcttcgcatttgaattctt 248 |||||||||||||||||||| Sbjct: 71969 gtcttcgcatttgaattctt 71950
>emb|BX005436.12| Zebrafish DNA sequence from clone DKEY-9A8 in linkage group 6, complete sequence Length = 168549 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 318 tgattacagcaacaataaca 337 |||||||||||||||||||| Sbjct: 82901 tgattacagcaacaataaca 82920
>emb|AL603882.13| Human DNA sequence from clone RP11-630I5 on chromosome 1 Contains the 5' end of the gene for microtubule associated testis specific serine/threonine protein kinase (MAST205), a ribosomal protein L6 (RPL6) pseudogene and a CpG island, complete sequence Length = 78745 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 496 aaatattgtctttccagaaa 515 |||||||||||||||||||| Sbjct: 30144 aaatattgtctttccagaaa 30163
>gb|AC163342.2| Mus musculus BAC clone RP24-115M13 from chromosome 9, complete sequence Length = 204620 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 504 tctttccagaaagaaaaacc 523 |||||||||||||||||||| Sbjct: 21328 tctttccagaaagaaaaacc 21309
>emb|BX572101.1| Prochlorococcus marinus MIT9313 complete genome; segment 7/7 Length = 318136 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 476 tcaatgcaaaaggatgaaag 495 |||||||||||||||||||| Sbjct: 72832 tcaatgcaaaaggatgaaag 72851
>gb|AC159379.14| Mus musculus 10 BAC RP23-210F14 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 226172 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 479 atgcaaaaggatgaaagaaatatt 502 ||||||||||| |||||||||||| Sbjct: 40830 atgcaaaaggaagaaagaaatatt 40853
>emb|AL627283.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18, complete chromosome; segment 19/20 Length = 249050 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 ttcctcggcaatcgcgccaa 152 |||||||||||||||||||| Sbjct: 190554 ttcctcggcaatcgcgccaa 190535
>gb|AC156991.9| Mus musculus chromosome 8, clone RP23-297F23, complete sequence Length = 164343 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 493 aagaaatattgtctttccag 512 |||||||||||||||||||| Sbjct: 135640 aagaaatattgtctttccag 135659
>emb|BX510930.15| Zebrafish DNA sequence from clone DKEY-91L18 in linkage group 14, complete sequence Length = 95848 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 445 aatcatattattttgatttc 464 |||||||||||||||||||| Sbjct: 64510 aatcatattattttgatttc 64491
>gb|CP000268.1| Rhodoferax ferrireducens DSM 15236 plasmid1, complete sequence Length = 257447 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 accaatacgagcatatcgct 359 |||||||||||||||||||| Sbjct: 204840 accaatacgagcatatcgct 204859
>gb|AC108100.2| Homo sapiens chromosome 5 clone RP11-125A21, complete sequence Length = 85231 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 460 atttcaatttgttatttcaa 479 |||||||||||||||||||| Sbjct: 32554 atttcaatttgttatttcaa 32573
>gb|AC010406.7| Homo sapiens chromosome 5 clone CTD-2154H6, complete sequence Length = 95089 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 catttgaattctttacatgt 255 |||||||||||||||||||| Sbjct: 65739 catttgaattctttacatgt 65720
>gb|AC159542.8| Mus musculus 10 BAC RP23-137B10 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 198525 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 479 atgcaaaaggatgaaagaaatatt 502 ||||||||||| |||||||||||| Sbjct: 197474 atgcaaaaggaagaaagaaatatt 197497
>gb|AC136037.2| Rattus norvegicus X BAC CH230-378N18 (Children's Hospital Oakland Research Institute) complete sequence Length = 98442 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 186 caattataaccgcagcattgtcat 209 ||||||||||| |||||||||||| Sbjct: 22762 caattataacctcagcattgtcat 22785
>gb|AF362371.1|AF362371 Dictyostelium discoideum histidine kinase DhkI (dhkI) gene, complete cds Length = 6074 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 cagcaacaataacatcacca 343 |||||||||||||||||||| Sbjct: 1666 cagcaacaataacatcacca 1685
>gb|AC103567.2| Caenorhabditis elegans cosmid Y51F10, complete sequence Length = 89249 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 97 taatgaaactattttggtaaaatt 120 |||||||||| ||||||||||||| Sbjct: 60315 taatgaaacttttttggtaaaatt 60338
>gb|AF166114.1|AF166114 Mesostigma viride chloroplast DNA, complete genome Length = 118360 Score = 40.1 bits (20), Expect = 9.0 Identities = 38/44 (86%) Strand = Plus / Plus Query: 383 cgaatacacatcaattttcgagctccactattgtctgctacatt 426 ||||||||||| | |||| ||| |||||||| ||||||||||| Sbjct: 15771 cgaatacacattatttttttagcgccactattatctgctacatt 15814
>gb|AC116330.2| Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence Length = 132254 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 cagcaacaataacatcacca 343 |||||||||||||||||||| Sbjct: 42174 cagcaacaataacatcacca 42155
>gb|AC010423.8| Homo sapiens chromosome 5 clone CTD-2193G5, complete sequence Length = 183787 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 236 catttgaattctttacatgt 255 |||||||||||||||||||| Sbjct: 143582 catttgaattctttacatgt 143601
>gb|AE016754.1| Mus musculus chromosome 10 high-growth region, section 2 of 2 of the complete sequence Length = 303688 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 479 atgcaaaaggatgaaagaaatatt 502 ||||||||||| |||||||||||| Sbjct: 256147 atgcaaaaggaagaaagaaatatt 256124
>emb|CT010464.7| M.truncatula DNA sequence from clone MTH2-95O22 on chromosome 3, complete sequence Length = 117153 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 453 tattttgatttcaatttgttattt 476 ||||||| |||||||||||||||| Sbjct: 28243 tattttgttttcaatttgttattt 28266
>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome Length = 4791961 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 ttcctcggcaatcgcgccaa 152 |||||||||||||||||||| Sbjct: 4645443 ttcctcggcaatcgcgccaa 4645424
>gb|AF041468.1| Guillardia theta complete plastid genome Length = 121524 Score = 40.1 bits (20), Expect = 9.0 Identities = 59/72 (81%) Strand = Plus / Minus Query: 386 atacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgaggttga 445 |||||||| | |||| ||||||||| || || |||||| ||||| ||||||| |||| Sbjct: 103777 atacacattatttttttagctccactgttatcagctacagttaaataagtctgagtttga 103718 Query: 446 atcatattattt 457 ||||||| |||| Sbjct: 103717 atcatataattt 103706
>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, complete genome Length = 4755700 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 ttcctcggcaatcgcgccaa 152 |||||||||||||||||||| Sbjct: 4620428 ttcctcggcaatcgcgccaa 4620409
>gb|AE016830.1| Enterococcus faecalis V583, complete genome Length = 3218031 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 107 attttggtaaaattcaattc 126 |||||||||||||||||||| Sbjct: 2952252 attttggtaaaattcaattc 2952271
>gb|AC154414.2| Mus musculus BAC clone RP24-231D24 from 16, complete sequence Length = 157232 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 416 tctgctacatttaaaagggt 435 |||||||||||||||||||| Sbjct: 141843 tctgctacatttaaaagggt 141824
>gb|AC158600.17| Mus musculus 10 BAC RP24-211K19 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 165879 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 tactagtatttataatactt 89 |||||||||||||||||||| Sbjct: 72121 tactagtatttataatactt 72140 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 tactagtatttataatactt 89 |||||||||||||||||||| Sbjct: 19820 tactagtatttataatactt 19801
>emb|CR385050.10| Zebrafish DNA sequence from clone DKEY-22I16 in linkage group 1, complete sequence Length = 145760 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 453 tattttgatttcaatttgtt 472 |||||||||||||||||||| Sbjct: 109311 tattttgatttcaatttgtt 109292
>gb|AF494278.1| Chaetosphaeridium globosum chloroplast, complete genome Length = 131183 Score = 40.1 bits (20), Expect = 9.0 Identities = 38/44 (86%) Strand = Plus / Plus Query: 383 cgaatacacatcaattttcgagctccactattgtctgctacatt 426 ||||||||||| | ||| || ||||||||||| ||||| ||||| Sbjct: 84071 cgaatacacataattttacgggctccactattatctgcaacatt 84114 Score = 40.1 bits (20), Expect = 9.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 242 aattctttacatgtacgtacaattacagctcg 273 ||||||||||| || ||||| ||||||||||| Sbjct: 83933 aattctttacaagtgcgtactattacagctcg 83964 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,470,317 Number of Sequences: 3902068 Number of extensions: 6470317 Number of successful extensions: 134050 Number of sequences better than 10.0: 237 Number of HSP's better than 10.0 without gapping: 255 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 131167 Number of HSP's gapped (non-prelim): 2741 length of query: 657 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 634 effective length of database: 17,143,297,704 effective search space: 10868850744336 effective search space used: 10868850744336 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
